mRNA_D-mesarthrocarpus_Contig11186.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig11186.2.1
Unique NamemRNA_D-mesarthrocarpus_Contig11186.2.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig11186.2.1 vs. uniprot
Match: A0A6H5KYN9_9PHAE (SecA_SW domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYN9_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 1.340e-20
Identity = 39/55 (70.91%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:    4 GLGTESVRFLTLTQLDNLWIEHLENMNLLKESVSMEVYRGNDPLEEFRVQVRHLF 168
            GL +ES RFLTLTQ+D+LW +HLENMNLLKESVSMEV+RG +PLEEF  Q + +F
Sbjct:   14 GLSSESARFLTLTQMDDLWCQHLENMNLLKESVSMEVFRGRNPLEEFGAQGKEMF 68
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BLAST of mRNA_D-mesarthrocarpus_Contig11186.2.1 vs. uniprot
Match: D8LR85_ECTSI (Protein translocase subunit SecA n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR85_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 9.210e-19
Identity = 40/56 (71.43%), Postives = 48/56 (85.71%), Query Frame = 1 
Query:    1 AGLGTESVRFLTLTQLDNLWIEHLENMNLLKESVSMEVYRGNDPLEEFRVQVRHLF 168
            AGL +ES RFLTLTQ+D+LW +HLENMNLLKESVSMEV+RG +PLEEF  Q + +F
Sbjct:  849 AGLSSESARFLTLTQMDDLWCQHLENMNLLKESVSMEVFRGRNPLEEFGAQGKEMF 904
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BLAST of mRNA_D-mesarthrocarpus_Contig11186.2.1 vs. uniprot
Match: A0A835ZJ09_9STRA (Protein translocase subunit SecA n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJ09_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 4.010e-12
Identity = 40/92 (43.48%), Postives = 48/92 (52.17%), Query Frame = 1 
Query:    4 GLGTESVRFLTLTQLDNLWI-------------------------------------EHLENMNLLKESVSMEVYRGNDPLEEFRVQVRHLF 168
            G G E+ R+LTLTQLD+LWI                                     +HL+ MNLLKESVSMEV+RGNDPL+EF+ Q R LF
Sbjct:  898 GPGLETARYLTLTQLDDLWIKSSYIPSTSTPPPQXXXXXXXXXXXXXXXXXXXXXXCDHLDRMNLLKESVSMEVFRGNDPLQEFKDQGRELF 989
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BLAST of mRNA_D-mesarthrocarpus_Contig11186.2.1 vs. uniprot
Match: R7QFF9_CHOCR (Chloroplast protein-transporting ATPase n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QFF9_CHOCR)

HSP 1 Score: 58.5 bits (140), Expect = 1.360e-8
Identity = 24/56 (42.86%), Postives = 38/56 (67.86%), Query Frame = 1 
Query:    1 AGLGTESVRFLTLTQLDNLWIEHLENMNLLKESVSMEVYRGNDPLEEFRVQVRHLF 168
            A   TE  RFL LTQ+DNLW+EH++ M+ LKE + +  Y  +DPL+ ++++   +F
Sbjct:  829 ASFSTEVCRFLWLTQMDNLWMEHMKQMDYLKEFIVLRSYASDDPLQAYQIEGFEMF 884
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BLAST of mRNA_D-mesarthrocarpus_Contig11186.2.1 vs. uniprot
Match: A0A1G2HNR0_9BACT (Protein translocase subunit SecA n=1 Tax=Candidatus Staskawiczbacteria bacterium RIFCSPHIGHO2_01_FULL_39_25 TaxID=1802202 RepID=A0A1G2HNR0_9BACT)

HSP 1 Score: 56.2 bits (134), Expect = 8.870e-8
Identity = 24/51 (47.06%), Postives = 37/51 (72.55%), Query Frame = 1 
Query:   16 ESVRFLTLTQLDNLWIEHLENMNLLKESVSMEVYRGNDPLEEFRVQVRHLF 168
            ++ RF++L  LDNLW EHL NM+ +++SV +  Y G+DPL E++ + R LF
Sbjct:  690 QAARFVSLKVLDNLWQEHLSNMDHMRDSVRLRAYGGHDPLIEYKNEGRRLF 740
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BLAST of mRNA_D-mesarthrocarpus_Contig11186.2.1 vs. uniprot
Match: A0A2V3INJ2_9FLOR (Protein translocase subunit SecA n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3INJ2_9FLOR)

HSP 1 Score: 56.2 bits (134), Expect = 8.880e-8
Identity = 24/55 (43.64%), Postives = 36/55 (65.45%), Query Frame = 1 
Query:    4 GLGTESVRFLTLTQLDNLWIEHLENMNLLKESVSMEVYRGNDPLEEFRVQVRHLF 168
            G   E +RFL LTQ+DNLW+EH++ ++ LKE + +  Y G DPL  ++ +   LF
Sbjct:  839 GFAGEVLRFLWLTQMDNLWLEHMKRLDYLKEFIVLRSYEGEDPLGAYQKEGFELF 893
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BLAST of mRNA_D-mesarthrocarpus_Contig11186.2.1 vs. uniprot
Match: A0A6P0NI08_9CYAN (Preprotein translocase subunit SecA (Fragment) n=1 Tax=Moorena sp. SIO3C2 TaxID=2607842 RepID=A0A6P0NI08_9CYAN)

HSP 1 Score: 53.5 bits (127), Expect = 2.570e-7
Identity = 24/55 (43.64%), Postives = 36/55 (65.45%), Query Frame = 1 
Query:    4 GLGTESVRFLTLTQLDNLWIEHLENMNLLKESVSMEVYRGNDPLEEFRVQVRHLF 168
            GL  ++ RF  L Q+DNLW EHL++M+ L+ESV +  Y   DPL E++ +   +F
Sbjct:   80 GLMRQAERFFILNQIDNLWREHLQSMDALRESVGLRGYGQKDPLIEYKQEGYEMF 134
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BLAST of mRNA_D-mesarthrocarpus_Contig11186.2.1 vs. uniprot
Match: A0A2W7BBM7_9CYAN (Protein translocase subunit SecA n=1 Tax=Snowella sp. TaxID=2164131 RepID=A0A2W7BBM7_9CYAN)

HSP 1 Score: 54.3 bits (129), Expect = 4.250e-7
Identity = 26/56 (46.43%), Postives = 36/56 (64.29%), Query Frame = 1 
Query:    1 AGLGTESVRFLTLTQLDNLWIEHLENMNLLKESVSMEVYRGNDPLEEFRVQVRHLF 168
            AGL  E+ RF  L Q+DNLW EHL++M  L+ESV +  Y   DPL E++ +   +F
Sbjct:  846 AGLMREAERFFILQQIDNLWREHLQSMEGLRESVGLRGYGQKDPLIEYKQEGYEMF 901
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BLAST of mRNA_D-mesarthrocarpus_Contig11186.2.1 vs. uniprot
Match: B9NYY1_PROMR (SecA Wing and Scaffold domain protein n=1 Tax=Prochlorococcus marinus str. MIT 9202 TaxID=93058 RepID=B9NYY1_PROMR)

HSP 1 Score: 53.1 bits (126), Expect = 5.220e-7
Identity = 25/55 (45.45%), Postives = 36/55 (65.45%), Query Frame = 1 
Query:    4 GLGTESVRFLTLTQLDNLWIEHLENMNLLKESVSMEVYRGNDPLEEFRVQVRHLF 168
            GL  E+ RF  L Q+DNLW EHL++M+ L+ESV +  Y   DPL E++ +   +F
Sbjct:  107 GLMREAERFFILQQIDNLWREHLQSMDSLRESVGLRGYGQKDPLIEYKNEGYDMF 161
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BLAST of mRNA_D-mesarthrocarpus_Contig11186.2.1 vs. uniprot
Match: A0A3R7PI49_9SYNE (Preprotein translocase subunit SecA (Fragment) n=1 Tax=Synechococcus sp. TMED155 TaxID=1986592 RepID=A0A3R7PI49_9SYNE)

HSP 1 Score: 53.9 bits (128), Expect = 5.620e-7
Identity = 25/56 (44.64%), Postives = 37/56 (66.07%), Query Frame = 1 
Query:    1 AGLGTESVRFLTLTQLDNLWIEHLENMNLLKESVSMEVYRGNDPLEEFRVQVRHLF 168
            +GL  E+ RF  L Q+DNLW EHL++M+ L+ESV +  Y   DPL E++ +   +F
Sbjct:  258 SGLMREAERFFILQQIDNLWREHLQSMDALRESVGLRGYGQKDPLIEYKNEGYDMF 313
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig11186.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KYN9_9PHAE1.340e-2070.91SecA_SW domain-containing protein n=1 Tax=Ectocarp... [more]
D8LR85_ECTSI9.210e-1971.43Protein translocase subunit SecA n=1 Tax=Ectocarpu... [more]
A0A835ZJ09_9STRA4.010e-1243.48Protein translocase subunit SecA n=1 Tax=Tribonema... [more]
R7QFF9_CHOCR1.360e-842.86Chloroplast protein-transporting ATPase n=1 Tax=Ch... [more]
A0A1G2HNR0_9BACT8.870e-847.06Protein translocase subunit SecA n=1 Tax=Candidatu... [more]
A0A2V3INJ2_9FLOR8.880e-843.64Protein translocase subunit SecA n=1 Tax=Gracilari... [more]
A0A6P0NI08_9CYAN2.570e-743.64Preprotein translocase subunit SecA (Fragment) n=1... [more]
A0A2W7BBM7_9CYAN4.250e-746.43Protein translocase subunit SecA n=1 Tax=Snowella ... [more]
B9NYY1_PROMR5.220e-745.45SecA Wing and Scaffold domain protein n=1 Tax=Proc... [more]
A0A3R7PI49_9SYNE5.620e-744.64Preprotein translocase subunit SecA (Fragment) n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig11186contigD-mesarthrocarpus_Contig11186:1275..1442 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LR85
Preferred namesecA
PFAMsSecA_DEAD,SecA_PP_bind,SecA_SW
Model size168
Max annot lvl2759|Eukaryota
KEGG koko:K03070
KEGG TC3.A.5.1,3.A.5.10,3.A.5.2,3.A.5.4
KEGG Pathwayko02024,ko03060,ko03070,map02024,map03060,map03070
KEGG ModuleM00335
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue1.51e-19
EggNOG OGsCOG0653@1|root,2QS7I@2759|Eukaryota
DescriptionATPase-coupled protein transmembrane transporter activity
Cds size168
COG categoryU
BRITEko00000,ko00001,ko00002,ko02044
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789243.2212994-CDS-D-mesarthrocarpus_Contig11186:1274..14421680789243.2212994-CDS-D-mesarthrocarpus_Contig11186:1274..1442Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig11186 1275..1442 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig11186.2.1prot_D-mesarthrocarpus_Contig11186.2.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig11186 1275..1442 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig11186.2.1

>prot_D-mesarthrocarpus_Contig11186.2.1 ID=prot_D-mesarthrocarpus_Contig11186.2.1|Name=mRNA_D-mesarthrocarpus_Contig11186.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=56bp
AGLGTESVRFLTLTQLDNLWIEHLENMNLLKESVSMEVYRGNDPLEEFRV
QVRHLF
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mRNA from alignment at D-mesarthrocarpus_Contig11186:1275..1442+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig11186.2.1 ID=mRNA_D-mesarthrocarpus_Contig11186.2.1|Name=mRNA_D-mesarthrocarpus_Contig11186.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=168bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig11186:1275..1442+ (Discosporangium mesarthrocarpum MT17_79)
GCTGGCCTTGGCACGGAGTCAGTACGCTTCCTGACCCTCACCCAGCTGGA
CAACTTGTGGATTGAGCACCTTGAGAATATGAACCTCCTCAAGGAGAGTG
TGTCCATGGAAGTTTACAGAGGAAATGATCCCCTTGAGGAGTTCAGGGTC
CAGGTAAGACACCTCTTT
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig11186:1275..1442+

>mRNA_D-mesarthrocarpus_Contig11186.2.1 ID=mRNA_D-mesarthrocarpus_Contig11186.2.1|Name=mRNA_D-mesarthrocarpus_Contig11186.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=168bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig11186:1275..1442+ (Discosporangium mesarthrocarpum MT17_79)
GCTGGCCTTGGCACGGAGTCAGTACGCTTCCTGACCCTCACCCAGCTGGA
CAACTTGTGGATTGAGCACCTTGAGAATATGAACCTCCTCAAGGAGAGTG
TGTCCATGGAAGTTTACAGAGGAAATGATCCCCTTGAGGAGTTCAGGGTC
CAGGTAAGACACCTCTTT
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