mRNA_D-mesarthrocarpus_Contig11181.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig11181.2.1
Unique NamemRNA_D-mesarthrocarpus_Contig11181.2.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig11181.2.1 vs. uniprot
Match: D7FNR7_ECTSI (Tubulin--tyrosine ligase-like protein 9 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNR7_ECTSI)

HSP 1 Score: 210 bits (534), Expect = 4.930e-64
Identity = 98/121 (80.99%), Postives = 108/121 (89.26%), Query Frame = 2
Query:    2 EAMKRRGWKETTSDTDWDFIWADRDIAYDMFDTKHLQSWQRVNHFRNDRELCRKDLLVKNLKKRKRSLQREGHQDKAQAVDHTFWPTTYVLPGEYALFAEEFKRSPHTKWIMKPIGRSQGR 364
            EAMKRRGW+ET SD+DWDFIWA+RDIAYD FDT+HL +WQRVNHFRNDRELCRKDLLVKNLKKRKRS+Q+EGHQ +A    H FWPTTYVLPGEYALFAEE KR  ++KWIMKPI RSQGR
Sbjct:   23 EAMKRRGWRETNSDSDWDFIWAERDIAYDTFDTRHLLNWQRVNHFRNDRELCRKDLLVKNLKKRKRSIQKEGHQGEADR--HDFWPTTYVLPGEYALFAEESKRRANSKWIMKPIARSQGR 141          
BLAST of mRNA_D-mesarthrocarpus_Contig11181.2.1 vs. uniprot
Match: A0A7S1C2X3_9STRA (Tubulin--tyrosine ligase-like protein 9 (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C2X3_9STRA)

HSP 1 Score: 170 bits (430), Expect = 1.110e-48
Identity = 75/121 (61.98%), Postives = 97/121 (80.17%), Query Frame = 2
Query:    2 EAMKRRGWKETTSDTDWDFIWADRDIAYDMFDTKHLQSWQRVNHFRNDRELCRKDLLVKNLKKRKRSLQREGHQDKAQAVDHTFWPTTYVLPGEYALFAEEFKRSPHTKWIMKPIGRSQGR 364
            + +KRRGWKET S+ DWD  WADR+  Y++FD+ HL +WQRVNHFRN RELCRKDLL+KN+K++K+ L ++G  D  +A  ++F PTTYVLPG+YALF EEFKR P   WIMKPIG++QG+
Sbjct:   30 DVLKRRGWKETDSELDWDLHWADREWVYEVFDSIHLDNWQRVNHFRNGRELCRKDLLIKNVKRQKKVLDKDGQHD--EAAKYSFCPTTYVLPGDYALFVEEFKRHPGAAWIMKPIGKAQGK 148          
BLAST of mRNA_D-mesarthrocarpus_Contig11181.2.1 vs. uniprot
Match: A0A5A8E0J4_CAFRO (Tubulin--tyrosine ligase-like protein 9 n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E0J4_CAFRO)

HSP 1 Score: 163 bits (413), Expect = 7.440e-46
Identity = 76/121 (62.81%), Postives = 91/121 (75.21%), Query Frame = 2
Query:    2 EAMKRRGWKETTSDTDWDFIWADRDIAYDMFDTKHLQSWQRVNHFRNDRELCRKDLLVKNLKKRKRSLQREGHQDKAQAVDHTFWPTTYVLPGEYALFAEEFKRSPHTKWIMKPIGRSQGR 364
            + M +RGWKET SD DWD  WADR+  Y++FD  HL SWQRVNHFRN RELCRKDLLVKN+K+ KR+L + G  ++A   D  F P T+VLPG+YALF EEF R   T WIMKPIGR+QG+
Sbjct:   44 DVMMKRGWKETESDDDWDMHWADREWVYEVFDAGHLMSWQRVNHFRNGRELCRKDLLVKNIKRAKRTLDKSGKPEEAARFD--FCPVTFVLPGDYALFVEEFNRCAGTVWIMKPIGRAQGK 162          
BLAST of mRNA_D-mesarthrocarpus_Contig11181.2.1 vs. uniprot
Match: A0A7S3Y3A5_HETAK (Tubulin--tyrosine ligase-like protein 9 (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y3A5_HETAK)

HSP 1 Score: 162 bits (409), Expect = 7.620e-46
Identity = 75/121 (61.98%), Postives = 98/121 (80.99%), Query Frame = 2
Query:    2 EAMKRRGWKETTSDTDWDFIWADRDIAYDMFDTKHLQSWQRVNHFRNDRELCRKDLLVKNLKKRKRSLQREGHQDKAQAVDHTFWPTTYVLPGEYALFAEEFKRSPHTKWIMKPIGRSQGR 364
            + +K RGWKET+SDT+WD  WADRD  YD+FDT HL+SWQR+NH+RN RELCRKDLLVKN+K+++R+L++EG  ++AQA  + F P ++VLP EYA+F EEFKR     WIMKPIG +QG+
Sbjct:   25 DVLKGRGWKETSSDTNWDIHWADRDWVYDVFDTMHLESWQRLNHYRNGRELCRKDLLVKNIKRKRRTLEKEGAFEEAQA--YNFLPVSFVLPREYAMFVEEFKRQGGV-WIMKPIGSAQGK 142          
BLAST of mRNA_D-mesarthrocarpus_Contig11181.2.1 vs. uniprot
Match: A0A7S4ED39_9STRA (Tubulin--tyrosine ligase-like protein 9 n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4ED39_9STRA)

HSP 1 Score: 161 bits (407), Expect = 4.420e-45
Identity = 79/121 (65.29%), Postives = 94/121 (77.69%), Query Frame = 2
Query:    2 EAMKRRGWKETTSDTDWDFIWADRDIAYDMFDTKHLQSWQRVNHFRNDRELCRKDLLVKNLKKRKRSLQREGHQDKAQAVDHTFWPTTYVLPGEYALFAEEFKRSPHTKWIMKPIGRSQGR 364
            + M  RGWKET SDTDWDF WA+R+  Y++FDT HL+  QR+NHFRN RELCRKDLLVKNLK+ KR LQR+G  D+A+A D  F P ++VLP EYA+F EEFKRS    WIMKPIG +QGR
Sbjct:   92 DVMTARGWKETDSDTDWDFHWAEREWVYEVFDTMHLEPHQRLNHFRNGRELCRKDLLVKNLKRMKRGLQRDGQVDQAKAYD--FMPLSFVLPREYAMFVEEFKRSGGV-WIMKPIGSAQGR 209          
BLAST of mRNA_D-mesarthrocarpus_Contig11181.2.1 vs. uniprot
Match: A0A7S2UXZ1_9STRA (Tubulin--tyrosine ligase-like protein 9 (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXZ1_9STRA)

HSP 1 Score: 152 bits (385), Expect = 1.610e-44
Identity = 68/121 (56.20%), Postives = 95/121 (78.51%), Query Frame = 2
Query:    2 EAMKRRGWKETTSDTDWDFIWADRDIAYDMFDTKHLQSWQRVNHFRNDRELCRKDLLVKNLKKRKRSLQREGHQDKAQAVDHTFWPTTYVLPGEYALFAEEFKRSPHTKWIMKPIGRSQGR 364
            + ++ R WKET S+T+WD  WADRD  Y++FD+ HL+SWQR+NH+RN RELCRKDL++KNLK+++R L++EG  ++AQ   + F+P ++VLP EYA+F EEFKR     WIMKPIG +QG+
Sbjct:   28 DVLRARNWKETDSETNWDIHWADRDWVYEVFDSMHLESWQRLNHYRNGRELCRKDLMIKNLKRKRRQLEKEGSFEEAQG--YNFFPVSFVLPREYAMFVEEFKRQGGV-WIMKPIGSAQGK 145          
BLAST of mRNA_D-mesarthrocarpus_Contig11181.2.1 vs. uniprot
Match: A0A2R5GDK3_9STRA (Tubulin--tyrosine ligase-like protein 9 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GDK3_9STRA)

HSP 1 Score: 155 bits (392), Expect = 9.850e-44
Identity = 74/121 (61.16%), Postives = 92/121 (76.03%), Query Frame = 2
Query:    8 MKRRGWKETTSDTDWDFIWADRDIAYDMFDTKHLQSWQRVNHFRNDRELCRKDLLVKNLKKRKRSLQREGHQDKAQAVDHTFWPTTYVLPGEYALFAEEFKRSPHTK--WIMKPIGRSQGR 364
            M +RGWKET SD DWD  W+DRD   D FD  H ++WQRVNH+RNDRELCRKDLL+KNLK++KR L+R+G    A+A  + F+P T+VLP EYA+F E FK++  T   WIMKPIG+SQGR
Sbjct:    1 MVKRGWKETDSDMDWDIHWSDRDWIIDHFDNAHFETWQRVNHYRNDRELCRKDLLIKNLKRQKRQLERDGS---AEADAYEFFPDTFVLPREYAIFVETFKKAGATTATWIMKPIGKSQGR 118          
BLAST of mRNA_D-mesarthrocarpus_Contig11181.2.1 vs. uniprot
Match: A0A1R2BEW1_9CILI (Tubulin--tyrosine ligase-like protein 9 n=2 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2BEW1_9CILI)

HSP 1 Score: 152 bits (384), Expect = 4.650e-42
Identity = 67/121 (55.37%), Postives = 96/121 (79.34%), Query Frame = 2
Query:    2 EAMKRRGWKETTSDTDWDFIWADRDIAYDMFDTKHLQSWQRVNHFRNDRELCRKDLLVKNLKKRKRSLQREGHQDKAQAVDHTFWPTTYVLPGEYALFAEEFKRSPHTKWIMKPIGRSQGR 364
            EA+KRR WKE+  D +WD +W++++  +++FD  HLQ  QR+NHFRN  ELCRKDL++KN+K+ K++L++EG  D+A  VD  F+P TY +PGEY+LF EEFK++ +T WIMKPIG+SQG+
Sbjct:   33 EALKRRTWKESEGDMEWDIMWSEKEWIHEVFDHVHLQPHQRINHFRNYAELCRKDLMIKNMKRYKKNLEKEGKMDEAAEVD--FFPLTYNMPGEYSLFVEEFKKNQNTVWIMKPIGKSQGK 151          
BLAST of mRNA_D-mesarthrocarpus_Contig11181.2.1 vs. uniprot
Match: W2QZ64_PHYPN (Tubulin--tyrosine ligase-like protein 9 n=14 Tax=Phytophthora parasitica TaxID=4792 RepID=W2QZ64_PHYPN)

HSP 1 Score: 151 bits (381), Expect = 3.250e-41
Identity = 69/121 (57.02%), Postives = 92/121 (76.03%), Query Frame = 2
Query:    2 EAMKRRGWKETTSDTDWDFIWADRDIAYDMFDTKHLQSWQRVNHFRNDRELCRKDLLVKNLKKRKRSLQREGHQDKAQAVDHTFWPTTYVLPGEYALFAEEFKRSPHTKWIMKPIGRSQGR 364
            + M RRGWKETT ++DWDF WADR+  Y++ DT HL++ QRVNH+RN RELCRKDLL+KNLK+ KR + ++  +       + F+P TY+LPGEYA+F EEFKR+    WIMKPIG++QG+
Sbjct:   79 DTMLRRGWKETT-ESDWDFYWADREYIYELLDTVHLENTQRVNHYRNGRELCRKDLLIKNLKRAKRQMDKKASELDTTLGSYDFFPVTYILPGEYAIFVEEFKRNQGV-WIMKPIGKAQGK 197          
BLAST of mRNA_D-mesarthrocarpus_Contig11181.2.1 vs. uniprot
Match: A0A482SPF5_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SPF5_9ARCH)

HSP 1 Score: 147 bits (372), Expect = 3.510e-41
Identity = 68/121 (56.20%), Postives = 89/121 (73.55%), Query Frame = 2
Query:    2 EAMKRRGWKETTSDTDWDFIWADRDIAYDMFDTKHLQSWQRVNHFRNDRELCRKDLLVKNLKKRKRSLQREGHQDKAQAVDHTFWPTTYVLPGEYALFAEEFKRSPHTKWIMKPIGRSQGR 364
            + +  RGWKE     DWDF+WADR+  Y  +D  HL+SWQR+NH+RN RELCRKDL+ KN+KKR+R L++EG  ++A A D  F PTT+VLP EY++F EEFK+     WIMKPIG +QG+
Sbjct:   45 DVLAARGWKEVGDHDDWDFVWADREWIYATYDRMHLESWQRLNHYRNGRELCRKDLMAKNIKKRRRQLEKEGRFEEANAYD--FIPTTFVLPREYSMFVEEFKKVGGV-WIMKPIGSAQGK 162          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig11181.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNR7_ECTSI4.930e-6480.99Tubulin--tyrosine ligase-like protein 9 n=1 Tax=Ec... [more]
A0A7S1C2X3_9STRA1.110e-4861.98Tubulin--tyrosine ligase-like protein 9 (Fragment)... [more]
A0A5A8E0J4_CAFRO7.440e-4662.81Tubulin--tyrosine ligase-like protein 9 n=2 Tax=Ca... [more]
A0A7S3Y3A5_HETAK7.620e-4661.98Tubulin--tyrosine ligase-like protein 9 (Fragment)... [more]
A0A7S4ED39_9STRA4.420e-4565.29Tubulin--tyrosine ligase-like protein 9 n=2 Tax=Pe... [more]
A0A7S2UXZ1_9STRA1.610e-4456.20Tubulin--tyrosine ligase-like protein 9 (Fragment)... [more]
A0A2R5GDK3_9STRA9.850e-4461.16Tubulin--tyrosine ligase-like protein 9 n=1 Tax=Ho... [more]
A0A1R2BEW1_9CILI4.650e-4255.37Tubulin--tyrosine ligase-like protein 9 n=2 Tax=St... [more]
W2QZ64_PHYPN3.250e-4157.02Tubulin--tyrosine ligase-like protein 9 n=14 Tax=P... [more]
A0A482SPF5_9ARCH3.510e-4156.20Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig11181contigD-mesarthrocarpus_Contig11181:1751..2998 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FNR7
Preferred nameTTLL9
PFAMsTTL
Model size364
Max annot lvl2759|Eukaryota
KEGG koko:K16603
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.17e-63
EggNOG OGsKOG2157@1|root,KOG2157@2759|Eukaryota
Descriptionprotein polyglycylation
Cds size357
COG categoryS
BRITEko00000,ko01000,ko04812
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789243.039798-UTR-D-mesarthrocarpus_Contig11181:1750..17571680789243.039798-UTR-D-mesarthrocarpus_Contig11181:1750..1757Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig11181 1751..1757 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789243.0533063-CDS-D-mesarthrocarpus_Contig11181:1757..18221680789243.0533063-CDS-D-mesarthrocarpus_Contig11181:1757..1822Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig11181 1758..1822 +
1680789243.0628152-CDS-D-mesarthrocarpus_Contig11181:2035..21551680789243.0628152-CDS-D-mesarthrocarpus_Contig11181:2035..2155Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig11181 2036..2155 +
1680789243.0740352-CDS-D-mesarthrocarpus_Contig11181:2826..29981680789243.0740352-CDS-D-mesarthrocarpus_Contig11181:2826..2998Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig11181 2827..2998 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig11181.2.1prot_D-mesarthrocarpus_Contig11181.2.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig11181 1758..2998 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig11181.2.1

>prot_D-mesarthrocarpus_Contig11181.2.1 ID=prot_D-mesarthrocarpus_Contig11181.2.1|Name=mRNA_D-mesarthrocarpus_Contig11181.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=119bp
MKRRGWKETTSDTDWDFIWADRDIAYDMFDTKHLQSWQRVNHFRNDRELC
RKDLLVKNLKKRKRSLQREGHQDKAQAVDHTFWPTTYVLPGEYALFAEEF
KRSPHTKWIMKPIGRSQGR
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mRNA from alignment at D-mesarthrocarpus_Contig11181:1751..2998+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig11181.2.1 ID=mRNA_D-mesarthrocarpus_Contig11181.2.1|Name=mRNA_D-mesarthrocarpus_Contig11181.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1248bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig11181:1751..2998+ (Discosporangium mesarthrocarpum MT17_79)
CGAGGCCATGAAGCGGCGCGGATGGAAGGAGACAACCAGTGATACGGATT GGGACTTCATCTGGGCGGACAGGTGATATGGGAGGTCATGTGGCACGTCT GGTTACAATTCAGGGTTTCTAATATAACCTCAGTCACAGATCTAAGCAAG CATTTCGTTGGTGGCCCTGTTGCCCCTGACAAAAACTTCGAAATGGCTAG ATAAGGACGCTCACTACCTGTGACCCCAGACGTTGTGCTATCTTGCTGCT TCCACTTATACCCATACACTCCCATCATGCGGCAGAGATATCGCATACGA CATGTTTGACACGAAGCACCTGCAGAGCTGGCAGCGAGTCAATCACTTTC GGAATGATCGAGAATTGTGCAGAAAAGATCTCCTGGTCAAGAACCTGAAA AAAAGGTCTGACTGGGGCGTTGTGGAGGTCAATTTAAACAGAGACTCTTT AAATCAGTTGACAGACAATATCGGGAGGAACTTTCGCAGGAGACGATAGG GAGACCCTCTGTTCAACCATGACCTTCAAGCCCTTTCATTATACTACTTG GAGCAAGCGACTAATGGAGGTAAAGGATTCTTGCGAACGCGTGAACACTA CAGGGTGTGAGCGTGCTCTTCATCACAGCCAAGTATTGTGATGTGTTCCC TCAAGTGCGCAGTTGATGTCAGACGCTGCCCACAAATGTGATGAATCACC GACGCTAGTACAGAAGAAACAAAAGTTCCTTGACAGAGCATATTTTGTCG TACCTGTTAATCTGAGAAGTATTTGGAATACGTAACCCGTAAATCCCAAC CCCCCCGAAGACGGTATACTAGATAAAGAACCAACGTTTGCAGCCACTGC AGCGAGAAACAATACATCCTCCTCTTTTGTCCCACTCAATTTGCAGCCGT AACTCAACACTAAAGACTCAAAACCTAAAGCACAAGACACAAGCAGTTAT CATTGCTTGGTAGACGGGCCTCCGTGTACTACGTATGTGACACCTCAGCT TTTGACACAATGCATTTTGACGTAACACATGCCCTCCTGCTACTGCTCCA CCCTCACAATCGTCCTCCCTGTAAAGGAAAAGATCCCTCCAGCGAGAAGG GCATCAGGACAAGGCTCAAGCGGTCGACCACACCTTCTGGCCAACCACCT ACGTCTTGCCAGGGGAGTATGCTCTGTTTGCAGAAGAGTTCAAGCGCTCG CCCCACACAAAGTGGATCATGAAGCCTATTGGGCGCTCTCAGGGCAGG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig11181:1751..2998+

>mRNA_D-mesarthrocarpus_Contig11181.2.1 ID=mRNA_D-mesarthrocarpus_Contig11181.2.1|Name=mRNA_D-mesarthrocarpus_Contig11181.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=357bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig11181:1751..2998+ (Discosporangium mesarthrocarpum MT17_79)
ATGAAGCGGCGCGGATGGAAGGAGACAACCAGTGATACGGATTGGGACTT
CATCTGGGCGGACAGAGATATCGCATACGACATGTTTGACACGAAGCACC
TGCAGAGCTGGCAGCGAGTCAATCACTTTCGGAATGATCGAGAATTGTGC
AGAAAAGATCTCCTGGTCAAGAACCTGAAAAAAAGGAAAAGATCCCTCCA
GCGAGAAGGGCATCAGGACAAGGCTCAAGCGGTCGACCACACCTTCTGGC
CAACCACCTACGTCTTGCCAGGGGAGTATGCTCTGTTTGCAGAAGAGTTC
AAGCGCTCGCCCCACACAAAGTGGATCATGAAGCCTATTGGGCGCTCTCA
GGGCAGG
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