mRNA_D-mesarthrocarpus_Contig11127.3.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig11127.3.1
Unique NamemRNA_D-mesarthrocarpus_Contig11127.3.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig11127.3.1 vs. uniprot
Match: A0A6H5L3S3_9PHAE (Fatty acid hydroxylase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3S3_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 1.650e-10
Identity = 30/46 (65.22%), Postives = 36/46 (78.26%), Query Frame = 1 
Query:  580 RVVPGTGLGRAVKRHHTLHHLKDERCWFAFTIPPIDTILGTIPLPS 717
            RVVP + LG+ +KRHH LHHLKD+ CW AFT PPIDT+ GT+P  S
Sbjct:  269 RVVPRSQLGKDLKRHHMLHHLKDDTCWLAFTAPPIDTLFGTVPSSS 314
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BLAST of mRNA_D-mesarthrocarpus_Contig11127.3.1 vs. uniprot
Match: K8Z8Q3_NANGC (Fatty acid hydroxylase-like protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z8Q3_NANGC)

HSP 1 Score: 66.2 bits (160), Expect = 1.310e-9
Identity = 30/48 (62.50%), Postives = 34/48 (70.83%), Query Frame = 1 
Query:  565 FSPAGRVVPGTGLGRAVKRHHTLHHLKDERCWFAFTIPPIDTILGTIP 708
            FS   RV P T LG+A+K HHT HHL DER WFAF+ P ID  LGT+P
Sbjct:   46 FSVHTRVRPRTALGKAIKAHHTKHHLLDERFWFAFSWPMIDASLGTVP 93
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BLAST of mRNA_D-mesarthrocarpus_Contig11127.3.1 vs. uniprot
Match: A0A4D9D3N1_9STRA (Fatty acid hydroxylase domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D3N1_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 1.080e-8
Identity = 34/58 (58.62%), Postives = 38/58 (65.52%), Query Frame = 1 
Query:  565 FSPAGRVVPGTGLGRAVKRHHTLHHLKDERCWFAFTIPPIDTILGTIP---LPSKGAQ 729
            FS   RV P T LG+A+K HHT HHL DER WFAF+ P ID  LGT+P   L  K AQ
Sbjct:  172 FSVHTRVRPRTALGKAIKAHHTKHHLVDERFWFAFSWPMIDASLGTVPAKELEGKEAQ 229
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BLAST of mRNA_D-mesarthrocarpus_Contig11127.3.1 vs. uniprot
Match: W7TJ02_9STRA (Fatty acid hydroxylase-like protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJ02_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 4.400e-8
Identity = 30/48 (62.50%), Postives = 34/48 (70.83%), Query Frame = 1 
Query:  565 FSPAGRVVPGTGLGRAVKRHHTLHHLKDERCWFAFTIPPIDTILGTIP 708
            FS   RV P T LG+A+K HHT HHL DER WFAF+ P ID  LGT+P
Sbjct:  303 FSVHTRVRPRTALGKAIKAHHTKHHLLDERFWFAFSWPMIDASLGTVP 350
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig11127.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5L3S3_9PHAE1.650e-1065.22Fatty acid hydroxylase domain-containing protein n... [more]
K8Z8Q3_NANGC1.310e-962.50Fatty acid hydroxylase-like protein n=1 Tax=Nannoc... [more]
A0A4D9D3N1_9STRA1.080e-858.62Fatty acid hydroxylase domain-containing protein n... [more]
W7TJ02_9STRA4.400e-862.50Fatty acid hydroxylase-like protein n=1 Tax=Nannoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig11127contigD-mesarthrocarpus_Contig11127:2441..3922 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog554065.XP_005845073.1
PFAMsFA_hydroxylase
Model size1482
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.56e-07
EggNOG OGs2DACJ@1|root,2S5FH@2759|Eukaryota
Cds size279
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789238.9777951-UTR-D-mesarthrocarpus_Contig11127:2440..31151680789238.9777951-UTR-D-mesarthrocarpus_Contig11127:2440..3115Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig11127 2441..3115 -
1680789239.0025096-UTR-D-mesarthrocarpus_Contig11127:3394..39221680789239.0025096-UTR-D-mesarthrocarpus_Contig11127:3394..3922Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig11127 3395..3922 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789238.9923646-CDS-D-mesarthrocarpus_Contig11127:3115..33941680789238.9923646-CDS-D-mesarthrocarpus_Contig11127:3115..3394Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig11127 3116..3394 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig11127.3.1prot_D-mesarthrocarpus_Contig11127.3.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig11127 3116..3394 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig11127.3.1

>prot_D-mesarthrocarpus_Contig11127.3.1 ID=prot_D-mesarthrocarpus_Contig11127.3.1|Name=mRNA_D-mesarthrocarpus_Contig11127.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=93bp
MVLWKYIRSDNPFSPAGRVVPGTGLGRAVKRHHTLHHLKDERCWFAFTIP
PIDTILGTIPLPSKGAQLENEGVSEWRLTAEDGHKEKLKWCE*
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mRNA from alignment at D-mesarthrocarpus_Contig11127:2441..3922-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig11127.3.1 ID=mRNA_D-mesarthrocarpus_Contig11127.3.1|Name=mRNA_D-mesarthrocarpus_Contig11127.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1482bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig11127:2441..3922- (Discosporangium mesarthrocarpum MT17_79)
GCGCTTGAAGCACTCCGTGAGAGAAGAGCACCGGGATATTTTGCCAACTG
TATTTCTGGCTGGGGAGGCGGGGGGCGTCAGGCTGGGTAATTGTGCAGGT
GTCCTGAGGTGGGAAGGGGGGAATTGTGACCGCATAGGCACCAGTAGAAT
TATCTTTTTATCTACGGGGGAGCCGTACGCTCTTGCTTGTAGAGCTAAAC
CAGCGCATTACAACCTCACCACCAAGAAACCCACCCTCATACGGTAAGAC
CTGCCAAGGGGATCTGGGAATCGGCAGTCTTCCCATGTATGTCATCCCTT
ACCCAACATCTGCCCCATCCGCAGCATCGGCTTTATCTATTAGAAGAGGC
CTCTCTCTCTCTCCGTATCTCTTGCTCCCCTCCCCCCTCCCTCTGTCTTT
CAAGGGATAACCTCGCAGTCAGTGGCCAAGGGCCAGCCGTCACCCCCCTT
ATTTTGTCCATGGGCAACCCACACCCTCCAGAGAGAACCAGAAGGGCTCG
CAGTCTTGCTGTTATCTTGTGACTCTAAATGGTACTCTGGAAGTACATCA
GAAGTGACAACCCGTTTTCCCCTGCTGGCAGGGTGGTACCAGGCACTGGT
TTGGGGAGGGCAGTCAAGCGGCATCACACCCTGCACCATCTCAAGGATGA
GAGGTGCTGGTTTGCCTTCACCATCCCACCCATTGACACAATCTTGGGGA
CAATCCCGTTGCCCTCAAAAGGGGCGCAGCTTGAAAATGAAGGAGTCAGT
GAGTGGAGGCTGACTGCCGAGGACGGACACAAGGAAAAATTGAAGTGGTG
TGAGTAAGAGAAAATGCCCCTCGAGGAGTGAGGACTGAGGGTACTGTGGG
CATGGCTGTTACAAGTTGAATCATGTATATTGATGTTTTTTTGTTTTCTA
CGTTGATTTTGCGTGTGCTTTGACCTGTCTTGAGAATGTGTGATGAAAGG
ATGCTGACATTGGCTTAATTGGCTCTGCTAGAGCTCCAGAGCTCTGAAGG
GGGGCCTGTGGTGGAGGATGGCCTAGTGTAGGGCGGTTGGATGGTTTGAA
ATGCTGTGAATTGTGGCATTTCTTTCCAAGGAATTGTATATTTGGGTGTT
TAGTAGTGACAGGAAGCATGTGGTACTCCGCAAGTTTCTGAGGTGGAGCC
CTGTGCCGGATAGCTTCAAGTGGGATTGAAAAATTGCCAGTTTGTCAACG
GCCTCAATTGGGAAAGTGCCAACCGTCACTCATGTTGTGTGCTGTGTTAT
CATGCATTGTGTGATCGATTTCATGTCTTCTTTGGGCCTTACCTGTGTAT
GTTCTGATGGCCTGCAGCCTCTAGAGGCATTGGTATGGAGGCTTGTTCCT
GGCCAACATAGTTTGATTTTGTGAATGTTGCTGGCACCCAGGATAGGTAT
GACAGATATGCGGAGAGGTGAATGTTGTTCATCCTCCAATGTAGCTACCT
GTTTCATGACTATTATGCATTCTTGGCTTAAT
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig11127:2441..3922-

>mRNA_D-mesarthrocarpus_Contig11127.3.1 ID=mRNA_D-mesarthrocarpus_Contig11127.3.1|Name=mRNA_D-mesarthrocarpus_Contig11127.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=279bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig11127:2441..3922- (Discosporangium mesarthrocarpum MT17_79)
ATGGTACTCTGGAAGTACATCAGAAGTGACAACCCGTTTTCCCCTGCTGG
CAGGGTGGTACCAGGCACTGGTTTGGGGAGGGCAGTCAAGCGGCATCACA
CCCTGCACCATCTCAAGGATGAGAGGTGCTGGTTTGCCTTCACCATCCCA
CCCATTGACACAATCTTGGGGACAATCCCGTTGCCCTCAAAAGGGGCGCA
GCTTGAAAATGAAGGAGTCAGTGAGTGGAGGCTGACTGCCGAGGACGGAC
ACAAGGAAAAATTGAAGTGGTGTGAGTAA
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