mRNA_D-mesarthrocarpus_Contig11124.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig11124.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig11124.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig11124.1.1 vs. uniprot
Match: A0A6H5JI83_9PHAE (NAD(P)-bd_dom domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JI83_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 3.470e-26
Identity = 51/53 (96.23%), Postives = 52/53 (98.11%), Query Frame = 1 
Query:    1 LGGEKFDAVFDMNAREVSDTKAVADVFNGKVDHYVFMSSAGVYLKSDLMPHRE 159
            LGGEKFDAVFDMNAREVSDTKAVADVF GKVDHYVFMSSAGVYLKS+LMPHRE
Sbjct:  122 LGGEKFDAVFDMNAREVSDTKAVADVFKGKVDHYVFMSSAGVYLKSELMPHRE 174
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BLAST of mRNA_D-mesarthrocarpus_Contig11124.1.1 vs. uniprot
Match: A0A835Z1X3_9STRA (38 kDa ribosome-associated protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1X3_9STRA)

HSP 1 Score: 100 bits (249), Expect = 4.040e-24
Identity = 46/53 (86.79%), Postives = 51/53 (96.23%), Query Frame = 1 
Query:    1 LGGEKFDAVFDMNAREVSDTKAVADVFNGKVDHYVFMSSAGVYLKSDLMPHRE 159
            LGGEKFDAV+DMNAREV DT+ +AD+FNGKV+HYVFMSSAGVYLKSDLMPHRE
Sbjct:   77 LGGEKFDAVYDMNAREVGDTQPLADLFNGKVEHYVFMSSAGVYLKSDLMPHRE 129
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BLAST of mRNA_D-mesarthrocarpus_Contig11124.1.1 vs. uniprot
Match: K9TF74_9CYAN (Nucleoside-diphosphate-sugar epimerase n=3 Tax=Oscillatoriaceae TaxID=1892254 RepID=K9TF74_9CYAN)

HSP 1 Score: 84.3 bits (207), Expect = 3.310e-18
Identity = 38/53 (71.70%), Postives = 45/53 (84.91%), Query Frame = 1 
Query:    1 LGGEKFDAVFDMNAREVSDTKAVADVFNGKVDHYVFMSSAGVYLKSDLMPHRE 159
            L  E+FDA+FD N RE+SDTK +AD+F GKV H+V+MSSAGVYLKSD MPHRE
Sbjct:   55 LASEQFDAIFDNNGRELSDTKPLADLFKGKVKHFVYMSSAGVYLKSDQMPHRE 107
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BLAST of mRNA_D-mesarthrocarpus_Contig11124.1.1 vs. uniprot
Match: A0A251WE96_9CYAN (3-beta hydroxysteroid dehydrogenase n=2 Tax=unclassified Alkalinema TaxID=2635015 RepID=A0A251WE96_9CYAN)

HSP 1 Score: 84.0 bits (206), Expect = 4.890e-18
Identity = 38/53 (71.70%), Postives = 45/53 (84.91%), Query Frame = 1 
Query:    1 LGGEKFDAVFDMNAREVSDTKAVADVFNGKVDHYVFMSSAGVYLKSDLMPHRE 159
            L GE FDA+FD N RE+SDT+ +AD+FNGKV H+V+MSSAGVYLKSD MPH E
Sbjct:   58 LAGESFDAIFDNNGRELSDTQPLADLFNGKVKHFVYMSSAGVYLKSDQMPHIE 110
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BLAST of mRNA_D-mesarthrocarpus_Contig11124.1.1 vs. uniprot
Match: A0A1U7IRN4_9CYAN (3-beta hydroxysteroid dehydrogenase n=1 Tax=Phormidium ambiguum IAM M-71 TaxID=454136 RepID=A0A1U7IRN4_9CYAN)

HSP 1 Score: 81.6 bits (200), Expect = 3.500e-17
Identity = 35/53 (66.04%), Postives = 46/53 (86.79%), Query Frame = 1 
Query:    1 LGGEKFDAVFDMNAREVSDTKAVADVFNGKVDHYVFMSSAGVYLKSDLMPHRE 159
            L GE+FDA+FD N RE+SDT+ +AD+F+GKV H+V+MSSAGVYLK+D +PH E
Sbjct:   59 LAGERFDAIFDNNGRELSDTQVLADIFHGKVKHFVYMSSAGVYLKTDQLPHIE 111
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BLAST of mRNA_D-mesarthrocarpus_Contig11124.1.1 vs. uniprot
Match: A0A1Z4RTS3_9CHRO (mRNA-binding protein n=1 Tax=Chondrocystis sp. NIES-4102 TaxID=2005460 RepID=A0A1Z4RTS3_9CHRO)

HSP 1 Score: 81.6 bits (200), Expect = 3.570e-17
Identity = 35/53 (66.04%), Postives = 45/53 (84.91%), Query Frame = 1 
Query:    1 LGGEKFDAVFDMNAREVSDTKAVADVFNGKVDHYVFMSSAGVYLKSDLMPHRE 159
            L GE FDA+FD N RE+SDT+ + ++FNGKV+H+V++SSAGVYLKS  MPHRE
Sbjct:   59 LSGESFDAIFDNNGRELSDTQPLVEIFNGKVNHFVYVSSAGVYLKSQQMPHRE 111
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BLAST of mRNA_D-mesarthrocarpus_Contig11124.1.1 vs. uniprot
Match: UPI000349A865 (NAD-dependent epimerase/dehydratase family protein n=1 Tax=Pleurocapsa sp. PCC 7319 TaxID=118161 RepID=UPI000349A865)

HSP 1 Score: 80.5 bits (197), Expect = 9.630e-17
Identity = 35/53 (66.04%), Postives = 44/53 (83.02%), Query Frame = 1 
Query:    1 LGGEKFDAVFDMNAREVSDTKAVADVFNGKVDHYVFMSSAGVYLKSDLMPHRE 159
            L GE FDA+FD N RE+SDT+ + ++FNGKV H+V++SSAGVYLKS  MPHRE
Sbjct:   59 LAGESFDAIFDNNGRELSDTQPLVEIFNGKVKHFVYVSSAGVYLKSHQMPHRE 111
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BLAST of mRNA_D-mesarthrocarpus_Contig11124.1.1 vs. uniprot
Match: UPI001684E51E (NAD-dependent epimerase/dehydratase family protein n=1 Tax=unclassified Leptolyngbya TaxID=2650499 RepID=UPI001684E51E)

HSP 1 Score: 80.1 bits (196), Expect = 1.310e-16
Identity = 34/53 (64.15%), Postives = 44/53 (83.02%), Query Frame = 1 
Query:    1 LGGEKFDAVFDMNAREVSDTKAVADVFNGKVDHYVFMSSAGVYLKSDLMPHRE 159
            L GE FDA+FD N RE+SDT+ + ++FNGK+ H+V++SSAGVYLKSD MPH E
Sbjct:   58 LSGESFDAIFDNNGRELSDTQPLVEIFNGKIQHFVYVSSAGVYLKSDQMPHIE 110
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig11124.1.1 vs. uniprot
Match: A0A2T1BZF5_9CYAN (3-beta hydroxysteroid dehydrogenase n=1 Tax=Merismopedia glauca CCAP 1448/3 TaxID=1296344 RepID=A0A2T1BZF5_9CYAN)

HSP 1 Score: 80.1 bits (196), Expect = 1.330e-16
Identity = 35/53 (66.04%), Postives = 44/53 (83.02%), Query Frame = 1 
Query:    1 LGGEKFDAVFDMNAREVSDTKAVADVFNGKVDHYVFMSSAGVYLKSDLMPHRE 159
            L  E FDA+FD N RE+SDT+ +A++F GKV H+V+MSSAGVYL SDL+PHRE
Sbjct:   59 LSSESFDAIFDNNGRELSDTQPLAEIFAGKVQHFVYMSSAGVYLPSDLLPHRE 111
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig11124.1.1 vs. uniprot
Match: L8M7H5_9CYAN (Nucleoside-diphosphate-sugar epimerase n=1 Tax=Xenococcus sp. PCC 7305 TaxID=102125 RepID=L8M7H5_9CYAN)

HSP 1 Score: 80.1 bits (196), Expect = 1.350e-16
Identity = 35/53 (66.04%), Postives = 43/53 (81.13%), Query Frame = 1 
Query:    1 LGGEKFDAVFDMNAREVSDTKAVADVFNGKVDHYVFMSSAGVYLKSDLMPHRE 159
            L GE FD VFD N RE+SDT+ + ++F GKV H+V++SSAGVYLKSD MPHRE
Sbjct:   59 LSGESFDVVFDNNGRELSDTQPLVEIFQGKVQHFVYVSSAGVYLKSDQMPHRE 111
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig11124.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JI83_9PHAE3.470e-2696.23NAD(P)-bd_dom domain-containing protein n=2 Tax=Ec... [more]
A0A835Z1X3_9STRA4.040e-2486.7938 kDa ribosome-associated protein n=1 Tax=Tribone... [more]
K9TF74_9CYAN3.310e-1871.70Nucleoside-diphosphate-sugar epimerase n=3 Tax=Osc... [more]
A0A251WE96_9CYAN4.890e-1871.703-beta hydroxysteroid dehydrogenase n=2 Tax=unclas... [more]
A0A1U7IRN4_9CYAN3.500e-1766.043-beta hydroxysteroid dehydrogenase n=1 Tax=Phormi... [more]
A0A1Z4RTS3_9CHRO3.570e-1766.04mRNA-binding protein n=1 Tax=Chondrocystis sp. NIE... [more]
UPI000349A8659.630e-1766.04NAD-dependent epimerase/dehydratase family protein... [more]
UPI001684E51E1.310e-1664.15NAD-dependent epimerase/dehydratase family protein... [more]
A0A2T1BZF5_9CYAN1.330e-1666.043-beta hydroxysteroid dehydrogenase n=1 Tax=Merism... [more]
L8M7H5_9CYAN1.350e-1666.04Nucleoside-diphosphate-sugar epimerase n=1 Tax=Xen... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig11124contigD-mesarthrocarpus_Contig11124:116..274 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LDG3
PFAMsEpimerase
Model size159
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000427,GO:0000428,GO:0001101,GO:0001871,GO:0003674,GO:0003676,GO:0003677,GO:0003723,GO:0005488,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005777,GO:0005840,GO:0005911,GO:0005975,GO:0005996,GO:0006139,GO:0006355,GO:0006364,GO:0006396,GO:0006412,GO:0006417,GO:0006518,GO:0006725,GO:0006807,GO:0006950,GO:0006952,GO:0006996,GO:0007154,GO:0007623,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009266,GO:0009409,GO:0009414,GO:0009415,GO:0009506,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009605,GO:0009607,GO:0009611,GO:0009617,GO:0009628,GO:0009657,GO:0009658,GO:0009889,GO:0009891,GO:0009893,GO:0009941,GO:0009987,GO:0009991,GO:0010035,GO:0010287,GO:0010297,GO:0010319,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0016020,GO:0016043,GO:0016070,GO:0016072,GO:0019219,GO:0019222,GO:0019538,GO:0022613,GO:0030054,GO:0030246,GO:0030247,GO:0030880,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031668,GO:0031967,GO:0031975,GO:0032268,GO:0032270,GO:0032544,GO:0032991,GO:0033554,GO:0034248,GO:0034250,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0042221,GO:0042254,GO:0042579,GO:0042631,GO:0042742,GO:0043043,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045727,GO:0045893,GO:0045935,GO:0046483,GO:0048046,GO:0048511,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051704,GO:0051707,GO:0051716,GO:0055044,GO:0060255,GO:0061695,GO:0065007,GO:0070887,GO:0071214,GO:0071229,GO:0071462,GO:0071496,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0098542,GO:0104004,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901700,GO:1901701,GO:1902494,GO:1902680,GO:1903506,GO:1903508,GO:1990234,GO:1990904,GO:2000112,GO:2001141
Exons1
Evalue5.68e-27
EggNOG OGs2CMCJ@1|root,2QPZ0@2759|Eukaryota
Ec32 ortholog description38 kDa ribosome-associated protein precursor
Ec32 orthologEc-15_000730.1
DescriptionNAD dependent epimerase/dehydratase family
Cds size159
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789238.8144872-CDS-D-mesarthrocarpus_Contig11124:115..2741680789238.8144872-CDS-D-mesarthrocarpus_Contig11124:115..274Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig11124 116..274 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig11124.1.1prot_D-mesarthrocarpus_Contig11124.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig11124 116..274 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig11124.1.1

>prot_D-mesarthrocarpus_Contig11124.1.1 ID=prot_D-mesarthrocarpus_Contig11124.1.1|Name=mRNA_D-mesarthrocarpus_Contig11124.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=53bp
LGGEKFDAVFDMNAREVSDTKAVADVFNGKVDHYVFMSSAGVYLKSDLMP
HRE
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mRNA from alignment at D-mesarthrocarpus_Contig11124:116..274-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig11124.1.1 ID=mRNA_D-mesarthrocarpus_Contig11124.1.1|Name=mRNA_D-mesarthrocarpus_Contig11124.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=159bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig11124:116..274- (Discosporangium mesarthrocarpum MT17_79)
CTGGGCGGGGAGAAGTTTGATGCGGTCTTCGACATGAACGCCCGTGAGGT
GTCAGACACCAAGGCAGTCGCCGACGTGTTCAATGGAAAGGTCGACCACT
ACGTCTTCATGAGCTCCGCCGGTGTCTACCTCAAGTCCGACCTTATGCCC
CACCGCGAG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig11124:116..274-

>mRNA_D-mesarthrocarpus_Contig11124.1.1 ID=mRNA_D-mesarthrocarpus_Contig11124.1.1|Name=mRNA_D-mesarthrocarpus_Contig11124.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=159bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig11124:116..274- (Discosporangium mesarthrocarpum MT17_79)
CTGGGCGGGGAGAAGTTTGATGCGGTCTTCGACATGAACGCCCGTGAGGT
GTCAGACACCAAGGCAGTCGCCGACGTGTTCAATGGAAAGGTCGACCACT
ACGTCTTCATGAGCTCCGCCGGTGTCTACCTCAAGTCCGACCTTATGCCC
CACCGCGAG
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