mRNA_D-mesarthrocarpus_Contig11107.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig11107.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig11107.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig11107.1.1 vs. uniprot
Match: D8LF93_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF93_ECTSI)

HSP 1 Score: 276 bits (705), Expect = 1.860e-82
Identity = 134/193 (69.43%), Postives = 160/193 (82.90%), Query Frame = 1
Query:    1 GVDASLLRLYAPILWRSLKVANPVVRRQACQVLVAAFPLQDPLAGAAAYDQVLQKQFDALTTLLEDGYPSVRAVAAKGVCQVLAVYWEMLPLPTTRGLLSRVMGRLALDASSPMVRLAATEGLSDLLDCPHSHGVLKAMLPGVSNLVHDSNKRVKVAFIGLLQKVKGIRAIKFYHVVPVDHLLARLAEDHNRC 579
            GVDA LLRLY P++WRSL+VANP VR QACQVLV AFPLQDP AGAA+YD  LQ+QF ALT LLED +P VRAVA KG C+VL+V+WEM+PL TTR LL+RV+GRLA D SSP VRLAA EGLS LL+CP SH VLK+MLPGV NL+HD+NK+V+ AF+ LL  VKG+++IK+Y V  VDH+LARL+ED  +C
Sbjct:  396 GVDADLLRLYGPVMWRSLRVANPSVRAQACQVLVDAFPLQDPSAGAASYDATLQQQFVALTDLLEDAHPQVRAVAGKGACRVLSVFWEMVPLDTTRALLTRVVGRLASDGSSPAVRLAAVEGLSVLLECPASHAVLKSMLPGVQNLIHDTNKKVRTAFVKLLLVVKGVKSIKYYQVATVDHILARLSEDDAKC 588          
BLAST of mRNA_D-mesarthrocarpus_Contig11107.1.1 vs. uniprot
Match: A0A6H5JG90_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG90_9PHAE)

HSP 1 Score: 237 bits (604), Expect = 8.320e-69
Identity = 123/200 (61.50%), Postives = 150/200 (75.00%), Query Frame = 1
Query:    1 GVDASLLRLYAPILWRSLKVANPVVRRQACQVLVAAFPLQDPLAGAAAYDQVLQKQFDALTTLLEDGYPSVRAVAAKGVCQVLAVYWEMLPLPTTRGLLSRVMGRLALDASSPMVRLAATEGLSDLLDCPHSHGVLKAMLP-------GVSNLVHDSNKRVKVAFIGLLQKVKGIRAIKFYHVVPVDHLLARLAEDHNRC 579
            GVDA LLRLY P++WRSL+VANP VR Q    L++         GAAAYD  LQ+QF ALT LLED +P VRAVA KG C+VL+V+WEM+PL TTR LL+RV+GRLA D SSP VRLAA EGLS LL+CP SH VLK+MLP       GV NL+HD+NK+V+ AF+ LL  VKG+++IK+Y V  VDH+LARL+EDH +C
Sbjct:  269 GVDADLLRLYGPVMWRSLRVANPSVRAQG--YLLSG-------VGAAAYDATLQQQFVALTDLLEDAHPQVRAVAGKGACRVLSVFWEMVPLDTTRALLTRVVGRLASDGSSPAVRLAAVEGLSVLLECPASHAVLKSMLPVSVSEEGGVQNLIHDTNKKVRTAFVKLLLVVKGVKSIKYYQVATVDHILARLSEDHAKC 459          
BLAST of mRNA_D-mesarthrocarpus_Contig11107.1.1 vs. uniprot
Match: A0A7S1CM40_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CM40_9STRA)

HSP 1 Score: 202 bits (515), Expect = 4.770e-60
Identity = 103/189 (54.50%), Postives = 130/189 (68.78%), Query Frame = 1
Query:    1 GVDASLLRLYAPILWRSLKVANPVVRRQACQVLVAAFPLQDPLAGAAAYDQVLQKQFDALTTLLEDGYPSVRAVAAKGVCQVLAVYWEMLPLPTTRGLLSRVMGRLALDASSPMVRLAATEGLSDLLDCPHSHGVLKAMLPGVSNLVHDSNKRVKVAFIGLLQKVKGIRAIKFYHVVPVDHLLARLAED 567
            GVD  L RLY PILWRSL  ANP VRR A   LV AFPLQ+P A     D  LQKQFDAL  LL D  P+VR VA  GVC+VL V+WE++P  T   LL+R++G LA D  S  VR A  EGL  +LDC  SH +LK +LP ++ L+HD ++RV+ AF+ LLQ+V  +R+I+F+ VV +DH++ARLA D
Sbjct:  198 GVDEMLDRLYEPILWRSLAAANPTVRRNAATALVDAFPLQNPEAARPVVDASLQKQFDALGALLSDPVPNVRVVAVHGVCKVLGVFWELIPAATAHALLARLVGELAHDVRSSAVRAAVFEGLDYVLDCGLSHPMLKPLLPALAPLLHDRSERVRAAFVALLQRVSKVRSIRFFDVVHIDHVMARLAMD 386          
BLAST of mRNA_D-mesarthrocarpus_Contig11107.1.1 vs. uniprot
Match: W7TM42_9STRA (Condensin-2 complex subunit g2 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TM42_9STRA)

HSP 1 Score: 206 bits (524), Expect = 4.920e-58
Identity = 106/188 (56.38%), Postives = 133/188 (70.74%), Query Frame = 1
Query:    4 VDASLLRLYAPILWRSLKVANPVVRRQACQVLVAAFPLQDPLAGAAAYDQVLQKQFDALTTLLEDGYPSVRAVAAKGVCQVLAVYWEMLPLPTTRGLLSRVMGRLALDASSPMVRLAATEGLSDLLDCPHSHGVLKAMLPGVSNLVHDSNKRVKVAFIGLLQKVKGIRAIKFYHVVPVDHLLARLAED 567
            VDA LLRLY PILWRSL+VA+P VR QA  +LV AFPLQDP  G      +LQ+Q D L +LL D  P VR  A  GVC+VL+++WE +PL  T+  ++R++G LA DASS +VRL+  EGL  LL+ P +H VLK+ LP  + L+ D   RV+ AF+GLLQKVK +R IKFY VVPV+HLLAR A D
Sbjct:  349 VDAMLLRLYDPILWRSLRVASPTVRAQATSLLVDAFPLQDPDMGTIEAAALLQRQLDVLQSLLLDPAPHVRVTAVAGVCRVLSLFWEAIPLQVTKAYVTRLVGSLAFDASSALVRLSVVEGLQQLLEQPLAHPVLKSALPLTAPLLQDKTPRVRAAFVGLLQKVKSVRDIKFYEVVPVEHLLARFATD 536          
BLAST of mRNA_D-mesarthrocarpus_Contig11107.1.1 vs. uniprot
Match: A0A1S3HII7_LINUN (condensin-2 complex subunit G2 n=2 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3HII7_LINUN)

HSP 1 Score: 196 bits (498), Expect = 1.480e-54
Identity = 100/189 (52.91%), Postives = 135/189 (71.43%), Query Frame = 1
Query:    1 GVDASLLRLYAPILWRSLKVANPVVRRQACQVLVAAFPLQDPLAGAAAYDQVLQKQFDALTTLLEDGYPSVRAVAAKGVCQVLAVYWEMLPLPTTRGLLSRVMGRLALDASSPMVRLAATEGLSDLLDCPHSHGVLKAMLPGVSNLVHDSNKRVKVAFIGLLQKVKGIRAIKFYHVVPVDHLLARLAED 567
            GVD  LLRLY PILWRSLKVAN  VR  A  +++ AFPLQ+P       D+++QKQFD L TLLED  P VRA    GVC++   +WE++P  T  GL+  ++  LA DA+S  VR+A  +GL+ LLD   SH + K +LPG+SNL+HD++++V+VAF+ +L KVKG+RAIKF+ +VP++HLLARL  D
Sbjct:  312 GVDEMLLRLYEPILWRSLKVANGNVRANAAALMIDAFPLQNPEDNVEEIDRLMQKQFDMLQTLLEDPCPVVRATTIHGVCRICCTFWELIPSQTIAGLVQSLVQDLAWDAASSDVRVAVLKGLTFLLDNHLSHPLFKTVLPGLSNLLHDTSEKVRVAFMEMLLKVKGMRAIKFWTIVPMEHLLARLEID 500          
BLAST of mRNA_D-mesarthrocarpus_Contig11107.1.1 vs. uniprot
Match: A0A2R5GJ73_9STRA (Condensin-2 complex subunit G2 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GJ73_9STRA)

HSP 1 Score: 194 bits (493), Expect = 6.250e-54
Identity = 103/189 (54.50%), Postives = 128/189 (67.72%), Query Frame = 1
Query:    1 GVDASLLRLYAPILWRSLKVANPVVRRQACQVLVAAFPLQDPLAGAAAYDQVLQKQFDALTTLLEDGYPSVRAVAAKGVCQVLAVYWEMLPLPTTRGLLSRVMGRLALDASSPMVRLAATEGLSDLLDCPHSHGVLKAMLPGVSNLVHDSNKRVKVAFIGLLQKVKGIRAIKFYHVVPVDHLLARLAED 567
            GVDA LLRLY PILWR+L VANP VR  A ++L  AFPLQDP A  A  DQVLQKQF A+ TLL D  P VR  A +G C++L+V+WE++P   T  LLS ++G L  D +SP VR+A   GL  + + P + G L  +LP  S L+HD +K+V+ A + LL +VK IR IKFY VV VDHLL RLA D
Sbjct:  373 GVDAMLLRLYNPILWRALNVANPSVRFNATRLLARAFPLQDPDASVAETDQVLQKQFAAIETLLRDVCPRVRVAAVQGACRMLSVFWELIPKKATVSLLSTLVGDLLRDTNSPEVRVAVLRGLEFISENPLAQGALHDVLPHTSPLIHDHSKQVRNALLSLLIRVKSIRTIKFYEVVQVDHLLERLAMD 561          
BLAST of mRNA_D-mesarthrocarpus_Contig11107.1.1 vs. uniprot
Match: A0A2G8JV81_STIJA (Putative condensin-2 complex subunit G2 n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8JV81_STIJA)

HSP 1 Score: 181 bits (459), Expect = 1.920e-53
Identity = 92/186 (49.46%), Postives = 125/186 (67.20%), Query Frame = 1
Query:    1 GVDASLLRLYAPILWRSLKVANPVVRRQACQVLVAAFPLQDPLAGAAAYDQVLQKQFDALTTLLEDGYPSVRAVAAKGVCQVLAVYWEMLPLPTTRGLLSRVMGRLALDASSPMVRLAATEGLSDLLDCPHSHGVLKAMLPGVSNLVHDSNKRVKVAFIGLLQKVKGIRAIKFYHVVPVDHLLARL 558
            GVD  L  LY PILWR+L  ANP VR  A  +L+ AFPLQDP +   + D +LQKQ DAL TLL D  P+VR  A +GVC+V++VYWE+LP       L++++     D SSP VR+A  +GL  +LD P SH +LK  LP + + +HD++++V ++F+ LL KVKGIR IK   +V ++HLLARL
Sbjct:   75 GVDKMLCTLYEPILWRALNAANPGVRVNAAYLLIDAFPLQDPESNKESMDAILQKQIDALNTLLCDPCPTVRVTAVQGVCKVVSVYWELLPAAAVSSFLAKLIQDQVYDTSSPDVRVAVFKGLKYILDNPLSHPLLKHTLPSLGDFIHDTSEKVIISFLELLLKVKGIRTIKVSSIVSMEHLLARL 260          
BLAST of mRNA_D-mesarthrocarpus_Contig11107.1.1 vs. uniprot
Match: L8GEA4_ACACA (HEAT repeat domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GEA4_ACACA)

HSP 1 Score: 192 bits (487), Expect = 4.580e-53
Identity = 101/189 (53.44%), Postives = 130/189 (68.78%), Query Frame = 1
Query:    1 GVDASLLRLYAPILWRSLKVANPVVRRQACQVLVAAFPLQDPLAGAAAYDQVLQKQFDALTTLLEDGYPSVRAVAAKGVCQVLAVYWEMLPLPTTRGLLSRVMGRLALDASSPMVRLAATEGLSDLLDCPHSHGVLKAMLPGVSNLVHDSNKRVKVAFIGLLQKVKGIRAIKFYHVVPVDHLLARLAED 567
            GVD  LLRLY PI+WRSLKVANP+VRR A  +L  AFPLQDP +     D++LQKQF+    LL D  P VR VA + VC++L V+WE++P  T R LL++++   A D SS  VR A  EGL  LLD   S  VLK  LP ++ L+HD+ +RV+VAFI LL ++K IRAI+FY +VP++HLL RL  D
Sbjct:  383 GVDEMLLRLYEPIIWRSLKVANPMVRRNATVLLADAFPLQDPDSAQRETDELLQKQFNQFEALLTDDVPVVRCVAVQAVCRILGVFWELIPAATIRTLLTKLINDSARDKSSSAVRQAVFEGLRYLLDNHLSQPVLKTHLPQLAPLIHDTAERVRVAFIDLLCEIKTIRAIRFYDIVPIEHLLTRLELD 571          
BLAST of mRNA_D-mesarthrocarpus_Contig11107.1.1 vs. uniprot
Match: A7RGR0_NEMVE (Predicted protein n=3 Tax=Nematostella vectensis TaxID=45351 RepID=A7RGR0_NEMVE)

HSP 1 Score: 191 bits (486), Expect = 6.260e-53
Identity = 95/186 (51.08%), Postives = 134/186 (72.04%), Query Frame = 1
Query:    1 GVDASLLRLYAPILWRSLKVANPVVRRQACQVLVAAFPLQDPLAGAAAYDQVLQKQFDALTTLLEDGYPSVRAVAAKGVCQVLAVYWEMLPLPTTRGLLSRVMGRLALDASSPMVRLAATEGLSDLLDCPHSHGVLKAMLPGVSNLVHDSNKRVKVAFIGLLQKVKGIRAIKFYHVVPVDHLLARL 558
            GVD +L+RLY PILWR+ KVANP+VR  A  +LV AFPLQ+P A     D +LQKQFD L  LLED  P VRA    GVC++  V+WE++P+ T + L++R++  +A DA+S  VR+A  +GL  L++   SH +LK +L  + +LVHD++++V+ AF+ LL  VKG++AIKF+ +VP+DHLLARL
Sbjct:  406 GVDEALVRLYQPILWRAFKVANPLVRANAAAILVDAFPLQNPDANNEEIDALLQKQFDLLQELLEDPSPIVRATGVHGVCRIAGVFWELIPVHTVKSLITRLITSVAFDATSSSVRVAVFQGLKFLVENHLSHPLLKNLLGSLRDLVHDTSEKVRAAFVDLLLLVKGMKAIKFWTIVPLDHLLARL 591          
BLAST of mRNA_D-mesarthrocarpus_Contig11107.1.1 vs. uniprot
Match: A0A6P8HAI6_ACTTE (condensin-2 complex subunit G2-like n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8HAI6_ACTTE)

HSP 1 Score: 191 bits (485), Expect = 8.290e-53
Identity = 94/186 (50.54%), Postives = 133/186 (71.51%), Query Frame = 1
Query:    1 GVDASLLRLYAPILWRSLKVANPVVRRQACQVLVAAFPLQDPLAGAAAYDQVLQKQFDALTTLLEDGYPSVRAVAAKGVCQVLAVYWEMLPLPTTRGLLSRVMGRLALDASSPMVRLAATEGLSDLLDCPHSHGVLKAMLPGVSNLVHDSNKRVKVAFIGLLQKVKGIRAIKFYHVVPVDHLLARL 558
            GVD +L+RLY PI+WR+ KVANP+VR  A  +L+ AFPLQDP A     D +LQKQFD L  LLED  P VRA    GVC++  V+WE++P+ T + LL++++  +A DASS  VR+A  +GL  LL+   SH  LK +L  + +L+HD++++V+ AF+ LL  VKG++AIKF+ +VP++HLLARL
Sbjct:  315 GVDEALVRLYQPIIWRAFKVANPMVRANAAALLIDAFPLQDPDANNEEVDNLLQKQFDILQNLLEDPSPVVRATGVHGVCRIAGVFWELIPVTTLKTLLNKLICEVAFDASSSSVRVAVFQGLKFLLENHLSHLFLKTLLVSLRDLIHDNSEKVRAAFVDLLLLVKGMKAIKFWSIVPLEHLLARL 500          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig11107.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LF93_ECTSI1.860e-8269.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JG90_9PHAE8.320e-6961.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1CM40_9STRA4.770e-6054.50Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
W7TM42_9STRA4.920e-5856.38Condensin-2 complex subunit g2 n=2 Tax=Monodopsida... [more]
A0A1S3HII7_LINUN1.480e-5452.91condensin-2 complex subunit G2 n=2 Tax=Lingula ung... [more]
A0A2R5GJ73_9STRA6.250e-5454.50Condensin-2 complex subunit G2 n=1 Tax=Hondaea fer... [more]
A0A2G8JV81_STIJA1.920e-5349.46Putative condensin-2 complex subunit G2 n=1 Tax=St... [more]
L8GEA4_ACACA4.580e-5353.44HEAT repeat domain containing protein n=1 Tax=Acan... [more]
A7RGR0_NEMVE6.260e-5351.08Predicted protein n=3 Tax=Nematostella vectensis T... [more]
A0A6P8HAI6_ACTTE8.290e-5350.54condensin-2 complex subunit G2-like n=1 Tax=Actini... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig11107contigD-mesarthrocarpus_Contig11107:20..2476 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LF93
Preferred nameNCAPG2
PFAMsCondensin2nSMC
Model size579
Max annot lvl2759|Eukaryota
KEGG koko:K11492
Hectar predicted targeting categoryother localisation
GOsGO:0000070,GO:0000278,GO:0000280,GO:0000793,GO:0000796,GO:0000819,GO:0001701,GO:0001824,GO:0001832,GO:0001833,GO:0001932,GO:0001934,GO:0002262,GO:0002376,GO:0002520,GO:0002682,GO:0002683,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0006139,GO:0006351,GO:0006366,GO:0006725,GO:0006807,GO:0006996,GO:0007049,GO:0007059,GO:0007275,GO:0008134,GO:0008150,GO:0008152,GO:0008283,GO:0009058,GO:0009059,GO:0009790,GO:0009792,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010467,GO:0010469,GO:0010562,GO:0010604,GO:0010646,GO:0010647,GO:0016043,GO:0016070,GO:0016604,GO:0016607,GO:0018130,GO:0019220,GO:0019222,GO:0019438,GO:0022402,GO:0023051,GO:0023056,GO:0030097,GO:0030099,GO:0030154,GO:0030218,GO:0031323,GO:0031325,GO:0031399,GO:0031401,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0033674,GO:0034101,GO:0034641,GO:0034645,GO:0034654,GO:0035064,GO:0040007,GO:0042325,GO:0042327,GO:0042393,GO:0042592,GO:0043009,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043425,GO:0043549,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044815,GO:0045595,GO:0045596,GO:0045637,GO:0045638,GO:0045646,GO:0045647,GO:0045859,GO:0045860,GO:0045937,GO:0046483,GO:0048285,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048583,GO:0048584,GO:0048589,GO:0048731,GO:0048856,GO:0048869,GO:0048872,GO:0050730,GO:0050731,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0051093,GO:0051171,GO:0051173,GO:0051174,GO:0051239,GO:0051241,GO:0051246,GO:0051247,GO:0051276,GO:0051338,GO:0051347,GO:0060255,GO:0061097,GO:0061098,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097659,GO:0098772,GO:0098813,GO:0140014,GO:0140030,GO:0140034,GO:1901360,GO:1901362,GO:1901576,GO:1903047,GO:1903706,GO:1903707,GO:2000026,GO:2000273
Exons5
Evalue3.05e-83
EggNOG OGsKOG1949@1|root,KOG1949@2759|Eukaryota
Descriptioninner cell mass cell proliferation
Cds size579
COG categoryQ
BRITEko00000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789237.7296994-CDS-D-mesarthrocarpus_Contig11107:19..1751680789237.7296994-CDS-D-mesarthrocarpus_Contig11107:19..175Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig11107 20..175 -
1680789237.7445395-CDS-D-mesarthrocarpus_Contig11107:775..9671680789237.7445395-CDS-D-mesarthrocarpus_Contig11107:775..967Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig11107 776..967 -
1680789237.7599974-CDS-D-mesarthrocarpus_Contig11107:1590..16881680789237.7599974-CDS-D-mesarthrocarpus_Contig11107:1590..1688Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig11107 1591..1688 -
1680789237.769463-CDS-D-mesarthrocarpus_Contig11107:1957..20061680789237.769463-CDS-D-mesarthrocarpus_Contig11107:1957..2006Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig11107 1958..2006 -
1680789237.7784705-CDS-D-mesarthrocarpus_Contig11107:2392..24761680789237.7784705-CDS-D-mesarthrocarpus_Contig11107:2392..2476Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig11107 2393..2476 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig11107.1.1prot_D-mesarthrocarpus_Contig11107.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig11107 20..2476 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig11107.1.1

>prot_D-mesarthrocarpus_Contig11107.1.1 ID=prot_D-mesarthrocarpus_Contig11107.1.1|Name=mRNA_D-mesarthrocarpus_Contig11107.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=193bp
GVDASLLRLYAPILWRSLKVANPVVRRQACQVLVAAFPLQDPLAGAAAYD
QVLQKQFDALTTLLEDGYPSVRAVAAKGVCQVLAVYWEMLPLPTTRGLLS
RVMGRLALDASSPMVRLAATEGLSDLLDCPHSHGVLKAMLPGVSNLVHDS
NKRVKVAFIGLLQKVKGIRAIKFYHVVPVDHLLARLAEDHNRC
back to top

mRNA from alignment at D-mesarthrocarpus_Contig11107:20..2476-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig11107.1.1 ID=mRNA_D-mesarthrocarpus_Contig11107.1.1|Name=mRNA_D-mesarthrocarpus_Contig11107.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=2457bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig11107:20..2476- (Discosporangium mesarthrocarpum MT17_79)
GGTGTGGACGCCTCCCTTCTTCGGCTGTACGCACCCATCCTGTGGCGGTC CTTGAAGGTGGCCAACCCAGTTGTGAGGAGGCAGGTGAGCCCTTGAGGAC ATGCTTTGGGCCAACCTGGCGCCGAGGAGAAATGTTAGTTCCTCGTGGGT TACTCTGGCAGGTGGTGGGGGACAGGCAGCGGGCAGAAGGAAGCGTCACC TCTAGGGTAGATTGTTTAGTTTCCTGGGAAGTGTCTCTCCTCTTTTTTTT TTCTTCATCTTTTCTTCGTTGTTCTCTTACTCTCGCGCGGGCGTATGCAA AGCTAACTGCCCCCTGATAGTGGGTTAGGGTTAGGGTTAGGGCTCAGCCC CTGTTACATCTACGTTGCCGACGCCGAAGCAGATGTAATGCCCTCAATGG GCAACCTCAATTGTCATCGATGAGGTAACCCTAGCCCCAACCCTAACCCT AAAGCCTCACCCGAACCCAGGCGTGTCAGGTGCTGGTGGCTGCATTCCCC CTGCAGGACCCCCTGGCTGGTGAGATAAGATAGATCGGACAATATAATGG TTAGATAAGATGAAATGAGATGAGACGAGTAGTACAGCATCAGTAGTAGT AGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAG TAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTA GTAGTAGTGGTAGTGGTAGTAGTAGTTGGAATACCAAATGCTAATTGTTA ATTGTCAACTGCGGATTGTTGACTGGCAATTGTTGCAGGTGCAGCAGCGT ACGACCAAGTCCTGCAGAAGCAGTTTGACGCTCTCACCACACTTCTTGAG GATGGATACCCTTCTGTCAGAGCTGTCGCTGCCAAGGTGGGTGGTTCTCT CTCTATATATATATATCTCTATATATATACATATATATATATATATATCT ATGTGTTTCTCATCCTCTTTCTCTCTTTCTCTCACTCCCTCCATTTCCAT TTTCACTTTTTTTCAGCACTAAAAAAACAAGAATTGTAGCTGTAGGGGTA GAGGTAGGGTTGATGTTACTTGTTGTTAGAGCTGCAGCACCAACCCGAAT ATGACCCCTCACCATGACCCTAATCCTAACCCCAATCCTGAACCCCAACC CTAGCCCTACCCCTGACCCCTGAAGGGAATTTACTGTCTCCTCGTTTGCA CATCAATAGTCCCAGACCAATAACCCTATCCCTAAACCCGCCCTAAACCT ATCACTAAACCCCAACCCTCAACTCCAACCCTAAACCCCAACCTCAACCC TACCCCTGACCCCTGAAAGGAATTCACTGCCTCCTTGTCTGCACATGATT AACCCACTATGTAAACCCTAACTCCAGCCTTAACCCCAACCCTAACAATT AATGCTAGCCATAACCCTAACCCCAACCCCAACACTAAACCCAACACTAG ACCCTGAATGCAAAGTTTGCAATCCCTAAGACCTCTTTGACCCCTCCACC GGCAAAAAGGGTGTGTGCCAGGTCCTTGCGGTGTACTGGGAAATGCTTCC CCTACCGACAACCAGAGGCCTCCTCTCCAGGGTCATGGGTCGGCTGGCCT TGGATGCGTCGTCCCCCATGGTCAGGCTGGCAGCCACGGAGGGCCTCTCT GACCTGCTCGACTGTCCGCACAGTCATGGGGTGCTCAAGGCCATGCTCCC GGTGGGTTAGTGATGAGGTTGAGGGGAGGGGAGTGGGGGGGCACGGGGGC TACCGCATCTGCTAGGGGGTTAGGGTTAAGGTTATTTCACCTGGTAGCAA TCCTTTTGGATTGCGATTGACAGATGAACTATGTACTGTACGCATTCACA TAGCTCTATCCCTAACCCTAACCCTAATCCTATGGCTGTGTTACTACCAC TACTACTATGTGCCAACCCCGACCCTAACCCTATAGCTGTATTACTACTG CTACTACTATGTACCAACCCTAACCCTAACCCTAACCCTAACCCTCACCC TAATCCCAGCCCAACCCTTGCTGGCACAGGACACGTTAACTACACCATGG GCGTTGCAAGGGTTTTTGAGAGTTTGGCGAATGGTTTTCCGGTTTCACAG AACCCTGACCTTTGCTGTGCACGGCAGTTACATGAGACGGTTACGTGAAG CAGTTACGTTGCGGTTACTCTCAAGTGTCCAGTACAAATAGCCTCAAAAC TAAACACGAGAAGCAAGACAGAACACCGGATTCTGGACCCACGGGAAGAC AAAAGCGCTTCTTCACCCCTTAAAGCTCTAGTCTACTCTACTCCACTGCA GGGAGTTTCGAACCTTGTCCATGACTCCAACAAGAGGGTGAAGGTGGCCT TCATTGGCCTGCTGCAGAAAGTCAAGGGTATTCGAGCTATCAAGTTCTAC CACGTGGTCCCAGTGGATCACCTGCTTGCCAGGCTAGCTGAAGATCACAA CAGGTGT
back to top

Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig11107:20..2476-

>mRNA_D-mesarthrocarpus_Contig11107.1.1 ID=mRNA_D-mesarthrocarpus_Contig11107.1.1|Name=mRNA_D-mesarthrocarpus_Contig11107.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=579bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig11107:20..2476- (Discosporangium mesarthrocarpum MT17_79)
GGTGTGGACGCCTCCCTTCTTCGGCTGTACGCACCCATCCTGTGGCGGTC
CTTGAAGGTGGCCAACCCAGTTGTGAGGAGGCAGGCGTGTCAGGTGCTGG
TGGCTGCATTCCCCCTGCAGGACCCCCTGGCTGGTGCAGCAGCGTACGAC
CAAGTCCTGCAGAAGCAGTTTGACGCTCTCACCACACTTCTTGAGGATGG
ATACCCTTCTGTCAGAGCTGTCGCTGCCAAGGGTGTGTGCCAGGTCCTTG
CGGTGTACTGGGAAATGCTTCCCCTACCGACAACCAGAGGCCTCCTCTCC
AGGGTCATGGGTCGGCTGGCCTTGGATGCGTCGTCCCCCATGGTCAGGCT
GGCAGCCACGGAGGGCCTCTCTGACCTGCTCGACTGTCCGCACAGTCATG
GGGTGCTCAAGGCCATGCTCCCGGGAGTTTCGAACCTTGTCCATGACTCC
AACAAGAGGGTGAAGGTGGCCTTCATTGGCCTGCTGCAGAAAGTCAAGGG
TATTCGAGCTATCAAGTTCTACCACGTGGTCCCAGTGGATCACCTGCTTG
CCAGGCTAGCTGAAGATCACAACAGGTGT
back to top