mRNA_D-mesarthrocarpus_Contig11081.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig11081.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig11081.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig11081.1.1 vs. uniprot
Match: D8LSE8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSE8_ECTSI)

HSP 1 Score: 125 bits (314), Expect = 1.710e-31
Identity = 64/90 (71.11%), Postives = 73/90 (81.11%), Query Frame = 1
Query:    1 QRLPSQLVQQYVDRQKRKKPLYHPVKMLEQSQFRMSLVLPDGKNSAKDLAFCPTESFDTKAQAKEHAALLCLLQLQQDQPLERKLPEPYK 270
            QRLPSQLVQQ+ DR + K+P +HPV+  E   FR  +VLPD KN+AKD+AFCPTESF T AQ KEHAALL LL+LQ DQPLERKLPEPYK
Sbjct:   65 QRLPSQLVQQHADRLQMKRPHFHPVQPSEPGLFRFRVVLPDRKNNAKDMAFCPTESFHTAAQGKEHAALLALLKLQGDQPLERKLPEPYK 154          
BLAST of mRNA_D-mesarthrocarpus_Contig11081.1.1 vs. uniprot
Match: A0A7S4GIH0_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4GIH0_9EUGL)

HSP 1 Score: 91.3 bits (225), Expect = 7.490e-22
Identity = 46/90 (51.11%), Postives = 64/90 (71.11%), Query Frame = 1
Query:    1 QRLPSQLVQQYVDRQKRKKPLYHPVKMLEQSQFRMSLVLPDGKNSAKDLAFCPTESFDTKAQAKEHAALLCLLQLQQDQPLERKLPEPYK 270
            QR+PSQL+ ++  R+KR KP+Y+  +  +    +  LVLPDGKN  +DL FCP ++F+T A AKE+ ALL LL +Q + PLERK PEPY+
Sbjct:    9 QRVPSQLLNEHCQREKRPKPMYY-TQSSKDGAHKQELVLPDGKNKDRDLRFCPVQTFETFALAKENVALLALLHVQGNLPLERKFPEPYR 97          
BLAST of mRNA_D-mesarthrocarpus_Contig11081.1.1 vs. uniprot
Match: A0A7S1N5J5_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1N5J5_9EUGL)

HSP 1 Score: 87.8 bits (216), Expect = 1.120e-18
Identity = 47/90 (52.22%), Postives = 61/90 (67.78%), Query Frame = 1
Query:    1 QRLPSQLVQQYVDRQKRKKPLYHPVKMLEQSQFRMSLVLPDGKNSAKDLAFCPTESFDTKAQAKEHAALLCLLQLQQDQPLERKLPEPYK 270
            QR+PSQ+V ++  ++KR KP+Y+       +  +  LVLPD KN  KDL FC  ++F TK  AKEH+ALL LL LQ   PLERKLPEPY+
Sbjct:   77 QRIPSQMVHEHCQKEKRPKPMYYTKG--GGNSCKEELVLPDPKNKEKDLRFCTVQTFPTKVLAKEHSALLALLHLQGTLPLERKLPEPYR 164          
BLAST of mRNA_D-mesarthrocarpus_Contig11081.1.1 vs. uniprot
Match: A0A7S3YXK1_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3YXK1_9EUKA)

HSP 1 Score: 84.7 bits (208), Expect = 2.410e-18
Identity = 46/89 (51.69%), Postives = 57/89 (64.04%), Query Frame = 1
Query:    1 QRLPSQLVQQYVDRQKRKKPLYHPVKMLEQSQFRMSLVLPDGKNSAKDLAFCPTESFDTKAQAKEHAALLCLLQLQQDQPLERKLPEPY 267
            QRLP QLVQ+Y  +QKR +P +   K   + +FR   VLPD KNSAKD+   PTE  DT  +A ++AAL  L  L    PL+RKLPEPY
Sbjct:   42 QRLPKQLVQEYCQKQKRPRPKFLRCKCDAKDKFRTRCVLPDPKNSAKDIVMAPTEPRDTLQEADQYAALAMLYHLSPSLPLQRKLPEPY 130          
BLAST of mRNA_D-mesarthrocarpus_Contig11081.1.1 vs. uniprot
Match: A0A7R9UC36_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UC36_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 5.220e-18
Identity = 48/90 (53.33%), Postives = 61/90 (67.78%), Query Frame = 1
Query:    1 QRLPSQLVQQYVDRQKRKKPLYHPVKMLEQSQFRMSLVLPDGKNSAKDLAFCPTESFDTKAQAKEHAALLCLLQLQQDQPLERKLPEPYK 270
            QRLP+QL+Q++  R +R +P Y     L QS+ RM +V+PD K S KDL F P ++F+    AKE+AALL L  LQ   PLERKLPEPYK
Sbjct:   55 QRLPTQLLQEFCQRDRRPRPRY-----LSQSRKRMKVVVPDAKKSEKDLHFLPEQAFEDDTLAKEYAALLALSHLQGSLPLERKLPEPYK 139          
BLAST of mRNA_D-mesarthrocarpus_Contig11081.1.1 vs. uniprot
Match: A0A7S3ZQW6_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZQW6_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 4.850e-17
Identity = 44/92 (47.83%), Postives = 62/92 (67.39%), Query Frame = 1
Query:    1 QRLPSQLVQQYVDRQKRKKPLYHPVKMLEQSQFRMSLVLPDGKN--SAKDLAFCPTESFDTKAQAKEHAALLCLLQLQQDQPLERKLPEPYK 270
            ++LPSQ++ ++  R+KR KP +HP K     + R   ++PD K   +  DLAFCP E+F +++ AKE+AALL L Q Q   PLERKLPEPY+
Sbjct:   94 EKLPSQMLGEWCQREKRPKPRWHPAKPAPPGKHRSRCIVPDPKRRGAEHDLAFCPAEAFPSESVAKENAALLALKQTQGSLPLERKLPEPYR 185          
BLAST of mRNA_D-mesarthrocarpus_Contig11081.1.1 vs. uniprot
Match: A0A484E393_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E393_BRELC)

HSP 1 Score: 82.4 bits (202), Expect = 2.310e-16
Identity = 42/90 (46.67%), Postives = 61/90 (67.78%), Query Frame = 1
Query:    1 QRLPSQLVQQYVDRQKRKKPLYHPVKMLEQSQFRMSLVLPDGKNSAKDLAFCPTESFDTKAQAKEHAALLCLLQLQQDQPLERKLPEPYK 270
            QR P QL+Q++   +KR+   Y   +  + ++FRM  VLPD K+S+KDL+FCP + FDT+  AK  AALL L  ++  +P ERKLP+PY+
Sbjct:   35 QRTPMQLLQEFCHSKKRRNAFYARARSKDAAKFRMRCVLPDVKDSSKDLSFCPEQEFDTQDDAKHCAALLALKHVEPLRPHERKLPDPYR 124          
BLAST of mRNA_D-mesarthrocarpus_Contig11081.1.1 vs. uniprot
Match: A0A662WEM2_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WEM2_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 4.280e-16
Identity = 40/90 (44.44%), Postives = 61/90 (67.78%), Query Frame = 1
Query:    1 QRLPSQLVQQYVDRQKRKKPLYHPVKMLEQSQFRMSLVLPDGKNSAKDLAFCPTESFDTKAQAKEHAALLCLLQLQQDQPLERKLPEPYK 270
            QR P QL+Q++   +K++   Y   +  + S+FRM  VLPDGK+S+KDL FCP + F++  +AK  AALL L  ++  +P ERKLP+P++
Sbjct:   35 QRTPMQLLQEFCQSKKKRNAYYARARATDASKFRMRCVLPDGKDSSKDLHFCPEQEFESMDEAKHCAALLALKHVEPLRPFERKLPDPFR 124          
BLAST of mRNA_D-mesarthrocarpus_Contig11081.1.1 vs. uniprot
Match: A0A225WDT4_9STRA (ATP-dependent RNA helicase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WDT4_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 4.300e-16
Identity = 41/90 (45.56%), Postives = 61/90 (67.78%), Query Frame = 1
Query:    1 QRLPSQLVQQYVDRQKRKKPLYHPVKMLEQSQFRMSLVLPDGKNSAKDLAFCPTESFDTKAQAKEHAALLCLLQLQQDQPLERKLPEPYK 270
            QR P QL+ ++   +KR+   Y   K  + ++FRM  VLPD K+S+KDL+FCP E F+++ +AK  AALL L  ++  +P ERKLP+PY+
Sbjct:   34 QRTPMQLLHEFCQAKKRRGAFYARAKSHDSAKFRMRCVLPDAKDSSKDLSFCPAEEFESQDEAKHCAALLALKHVEPLRPHERKLPDPYR 123          
BLAST of mRNA_D-mesarthrocarpus_Contig11081.1.1 vs. uniprot
Match: A0A2D4BVX1_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BVX1_PYTIN)

HSP 1 Score: 81.6 bits (200), Expect = 4.360e-16
Identity = 44/90 (48.89%), Postives = 59/90 (65.56%), Query Frame = 1
Query:    1 QRLPSQLVQQYVDRQKRKKPLYHPVKMLEQSQFRMSLVLPDGKNSAKDLAFCPTESFDTKAQAKEHAALLCLLQLQQDQPLERKLPEPYK 270
            QR P Q++ +Y   +KR+ P Y   +  E  + RM  +LPD K+SAKDL FCP +SF+T  +AK  AALL L  L   QPLERKLP+P++
Sbjct:   35 QRTPMQILHEYCQSKKRQNPRYVHARAPE-GRTRMRCILPDDKSSAKDLVFCPEQSFETVEEAKHCAALLALQHLDPRQPLERKLPDPFR 123          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig11081.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LSE8_ECTSI1.710e-3171.11Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S4GIH0_9EUGL7.490e-2251.11Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
A0A7S1N5J5_9EUGL1.120e-1852.22Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
A0A7S3YXK1_9EUKA2.410e-1851.69Hypothetical protein (Fragment) n=1 Tax=Lotharella... [more]
A0A7R9UC36_9STRA5.220e-1853.33Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A7S3ZQW6_9STRA4.850e-1747.83Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A484E393_BRELC2.310e-1646.67Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A662WEM2_9STRA4.280e-1644.44Uncharacterized protein (Fragment) n=2 Tax=Nothoph... [more]
A0A225WDT4_9STRA4.300e-1645.56ATP-dependent RNA helicase n=1 Tax=Phytophthora me... [more]
A0A2D4BVX1_PYTIN4.360e-1648.89Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig11081contigD-mesarthrocarpus_Contig11081:51..1003 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LSE8
PFAMsDEAD,HA2,Helicase_C,OB_NTP_bind,RWD,dsrm
Model size273
Max annot lvl2759|Eukaryota
KEGG koko:K13026
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.8e-32
EggNOG OGsCOG1643@1|root,KOG0920@2759|Eukaryota
EC3.6.4.13
Descriptionhelicase activity
Cds size273
COG categoryL
BRITEko00000,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789235.5696425-CDS-D-mesarthrocarpus_Contig11081:50..1401680789235.5696425-CDS-D-mesarthrocarpus_Contig11081:50..140Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig11081 51..140 +
1680789235.5806787-CDS-D-mesarthrocarpus_Contig11081:820..10031680789235.5806787-CDS-D-mesarthrocarpus_Contig11081:820..1003Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig11081 821..1003 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig11081.1.1prot_D-mesarthrocarpus_Contig11081.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig11081 51..1003 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig11081.1.1

>prot_D-mesarthrocarpus_Contig11081.1.1 ID=prot_D-mesarthrocarpus_Contig11081.1.1|Name=mRNA_D-mesarthrocarpus_Contig11081.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=91bp
QRLPSQLVQQYVDRQKRKKPLYHPVKMLEQSQFRMSLVLPDGKNSAKDLA
FCPTESFDTKAQAKEHAALLCLLQLQQDQPLERKLPEPYK*
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mRNA from alignment at D-mesarthrocarpus_Contig11081:51..1003+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig11081.1.1 ID=mRNA_D-mesarthrocarpus_Contig11081.1.1|Name=mRNA_D-mesarthrocarpus_Contig11081.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=953bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig11081:51..1003+ (Discosporangium mesarthrocarpum MT17_79)
CAGCGACTTCCTTCCCAGCTGGTCCAGCAGTACGTGGACAGGCAAAAACG GAAGAAGCCCCTCTACCACCCGGTCAAGATGTTGGAACAGGTAATTATCG CGGGGAGATCCTCTCCCTAACCCTAACCCTAACCCTACCCCTCACACGAT GATGACCATAACCCTGCAACCCTCGATGGGTGTGCGGTGGGCGCGTTACT TCTTTTTGCTTAAGAGTTTTTATTTTCTTAGGGAGTGGTGTATCTATATC TGGTCTATATTTATAAATATATGTCTGTGTGTACTTGGTGCTCCCCCAGA GTGTGCCGAAATGGTCACAAGAGCCTGGAGCCAAACCCTAACCCTTTCCC TTGGTGCGGGCTCTGGCTCTGACAGACCCTGGGTCTGCATGACACGACGT GTGACATGTCATATGACACACGACATGCAGTGCATACTTCAGTAAGAGGG AACCTTGTCTGTCAACACAGTGTTAACATACACGGCGCGTTTGGTACGCG TGGTTTGGCACTATGCCTCAATCACAATCTCTCACGGCAGACAACCCCCC CCTCCCCCCTCGCTCCCCCCCCTCCTCCCCTGTCCAGCGCCTCCTCTACC CGCCCCCTTGATCCTAACCCTAAGCCTCACCCCAACCCCAACCCTATCCC AAACCGAACCAAACATGTGGGTAACCTAAAACTAGGCGTGCACATTTTCT TGCTTGCCTGCCTGTGTGTGTGTGTGTGTGTCAATGCATGGCACCTGCGT GCCAGCACAAGGAAAAAAAGTCCCAGTTCCGCATGAGCCTGGTGCTCCCT GACGGGAAGAACAGTGCCAAGGACCTGGCTTTCTGCCCCACGGAATCGTT TGACACCAAGGCGCAGGCCAAGGAGCACGCGGCCCTCCTCTGCCTCCTCC AGCTGCAGCAGGACCAGCCCTTGGAACGGAAGCTCCCAGAGCCATACAAG TGA
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig11081:51..1003+

>mRNA_D-mesarthrocarpus_Contig11081.1.1 ID=mRNA_D-mesarthrocarpus_Contig11081.1.1|Name=mRNA_D-mesarthrocarpus_Contig11081.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=273bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig11081:51..1003+ (Discosporangium mesarthrocarpum MT17_79)
CAGCGACTTCCTTCCCAGCTGGTCCAGCAGTACGTGGACAGGCAAAAACG
GAAGAAGCCCCTCTACCACCCGGTCAAGATGTTGGAACAGTCCCAGTTCC
GCATGAGCCTGGTGCTCCCTGACGGGAAGAACAGTGCCAAGGACCTGGCT
TTCTGCCCCACGGAATCGTTTGACACCAAGGCGCAGGCCAAGGAGCACGC
GGCCCTCCTCTGCCTCCTCCAGCTGCAGCAGGACCAGCCCTTGGAACGGA
AGCTCCCAGAGCCATACAAGTGA
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