mRNA_D-mesarthrocarpus_Contig11050.3.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig11050.3.1
Unique NamemRNA_D-mesarthrocarpus_Contig11050.3.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig11050.3.1 vs. uniprot
Match: H3G5T8_PHYRM (Uncharacterized protein n=5 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G5T8_PHYRM)

HSP 1 Score: 127 bits (318), Expect = 1.710e-34
Identity = 65/133 (48.87%), Postives = 92/133 (69.17%), Query Frame = 1
Query:    7 RSTSGYMFTMSGAAITWSSKMQPIVALSTTEAEYISLSHAAQEAIYLGNFFEEL-RFPEYKTITMYEDNMGALQLVSNKIYPARTKHIGVRFHFLRDLVQDNKIILQHVSTVNQLAHVLTKFLPLPRFQFLRS 402
            RSTSGY F M+G  I+W SK Q  VALS+TEAEY++LS A QEA++L  F  EL      + + +YEDN G++ L  N  +  RTKHI +R+HF+R+ V+D +++LQ+VST + LA ++TK +P  +F  LRS
Sbjct:   41 RSTSGYAFMMNGGCISWRSKKQRTVALSSTEAEYMALSEATQEAVWLKVFLCELGEMASDEAVKIYEDNQGSIALAKNPQFHKRTKHIDIRYHFVREKVEDGQVVLQYVSTTDMLADMMTKAIPATQFHVLRS 173          
BLAST of mRNA_D-mesarthrocarpus_Contig11050.3.1 vs. uniprot
Match: A0A6H5IWB1_9HYME (Uncharacterized protein n=1 Tax=Trichogramma brassicae TaxID=86971 RepID=A0A6H5IWB1_9HYME)

HSP 1 Score: 127 bits (318), Expect = 1.110e-33
Identity = 63/123 (51.22%), Postives = 90/123 (73.17%), Query Frame = 1
Query:    7 RSTSGYMFTMSGAAITWSSKMQPIVALSTTEAEYISLSHAAQEAIYLGNFFEELRFPEYKTITMYEDNMGALQLVSNKIYPARTKHIGVRFHFLRDLVQDNKIILQHVSTVNQLAHVLTKFLP 375
            RS SGYMF++S +A++W SK Q  VALS+TEAEY+SLS AA+EAI+L N  +EL F +   +T+Y DN  A +L SN ++ AR+KHI +R HF+R++++D K  L+++ST    A +LTK LP
Sbjct:  110 RSYSGYMFSLSNSAVSWCSKKQKSVALSSTEAEYMSLSDAAKEAIFLSNLLKELGFDDLARMTVYNDNQSAAKLASNPVFHARSKHIDIRAHFIREVLKDGKFDLKYLSTDEMTADILTKALP 232          
BLAST of mRNA_D-mesarthrocarpus_Contig11050.3.1 vs. uniprot
Match: UPI000D3F8D86 (Ty1/Copia family ribonuclease HI n=1 Tax=Acinetobacter nosocomialis TaxID=106654 RepID=UPI000D3F8D86)

HSP 1 Score: 124 bits (310), Expect = 6.300e-33
Identity = 65/135 (48.15%), Postives = 94/135 (69.63%), Query Frame = 1
Query:    1 TNRSTSGYMFTMSGAAITWSSKMQPIVALSTTEAEYISLSHAAQEAIYLGNFFEELRFPEYKT-ITMYEDNMGALQLVSNKIYPARTKHIGVRFHFLRDLVQDNKIILQHVSTVNQLAHVLTKFLPLPRFQFLRS 402
            T RSTSGY F M+G  I+W SK Q  VALS+TEAEY++L+ A QEAI+L  F  E+   E K+ + +YEDN G++ L  N  +  RTKHI +R+HF+R+ V+D +++L++ ST + LA ++TK +   +F FLRS
Sbjct:   43 TRRSTSGYAFMMNGGCISWRSKKQRTVALSSTEAEYMALTEATQEAIWLKAFLCEIGEMETKSAVKIYEDNQGSIALAKNPEFHKRTKHIDIRYHFVREKVEDGQVVLEYCSTKDMLADLMTKPITAVQFDFLRS 177          
BLAST of mRNA_D-mesarthrocarpus_Contig11050.3.1 vs. uniprot
Match: UPI001372DC10 (Ty1/Copia family RNAse HI domain-containing protein n=3 Tax=Bacteria TaxID=2 RepID=UPI001372DC10)

HSP 1 Score: 125 bits (315), Expect = 1.810e-32
Identity = 64/133 (48.12%), Postives = 93/133 (69.92%), Query Frame = 1
Query:    7 RSTSGYMFTMSGAAITWSSKMQPIVALSTTEAEYISLSHAAQEAIYLGNFFEEL-RFPEYKTITMYEDNMGALQLVSNKIYPARTKHIGVRFHFLRDLVQDNKIILQHVSTVNQLAHVLTKFLPLPRFQFLRS 402
            RSTSGY F M+G  I+W SK Q  VALS+TEAEY++LS A QEA++L  F  EL      + + +YEDN G++ L  N  +  RTKHI +R+HF+R+ V+D +++LQ+VST++ LA ++TK +  P+F  LR+
Sbjct:  167 RSTSGYAFMMNGGCISWRSKKQRTVALSSTEAEYMALSEATQEAVWLKVFLCELGEMASDEAVKIYEDNQGSIALAKNPEFHKRTKHIDIRYHFVREKVEDGQVVLQYVSTLDMLADIMTKPIAAPQFDALRT 299          
BLAST of mRNA_D-mesarthrocarpus_Contig11050.3.1 vs. uniprot
Match: A0A6H5I0U2_9HYME (Uncharacterized protein n=1 Tax=Trichogramma brassicae TaxID=86971 RepID=A0A6H5I0U2_9HYME)

HSP 1 Score: 122 bits (305), Expect = 4.070e-32
Identity = 61/129 (47.29%), Postives = 88/129 (68.22%), Query Frame = 1
Query:    7 RSTSGYMFTMSGAAITWSSKMQPIVALSTTEAEYISLSHAAQEAIYLGNFFEELRFPEYKTITMYEDNMGALQLVSNKIYPARTKHIGVRFHFLRDLVQDNKIILQHVSTVNQLAHVLTKFLPLPRFQF 393
            +S SGY+F++S  AI+W SK Q  VALS+TEAEY+SLS AA+EAIYL     EL F +     +Y DN  A +L +N ++ AR+KHI +R HF+R+ ++D K  L+++ T + +A +LTK LP P+  F
Sbjct:   73 KSYSGYVFSLSNGAISWCSKKQKSVALSSTEAEYMSLSDAAKEAIYLSGLLTELGFTDLSRTIIYNDNQSAGKLATNPVFHARSKHIDIRAHFVREALKDGKFTLEYLPTEDMIADILTKALPKPKVDF 201          
BLAST of mRNA_D-mesarthrocarpus_Contig11050.3.1 vs. uniprot
Match: H3GB36_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GB36_PHYRM)

HSP 1 Score: 125 bits (315), Expect = 5.110e-32
Identity = 64/133 (48.12%), Postives = 92/133 (69.17%), Query Frame = 1
Query:    7 RSTSGYMFTMSGAAITWSSKMQPIVALSTTEAEYISLSHAAQEAIYLGNFFEEL-RFPEYKTITMYEDNMGALQLVSNKIYPARTKHIGVRFHFLRDLVQDNKIILQHVSTVNQLAHVLTKFLPLPRFQFLRS 402
            RSTSGY F M+G  I+W SK Q  VALS+TEAEY++LS A QEA++L  F  EL      + + +YEDN G++ L  N  +  RTKHI +R+HF+R+ V+D +++LQ+VST + LA ++TK +P  +F  LR+
Sbjct:  223 RSTSGYAFMMNGGCISWRSKKQRTVALSSTEAEYMALSEATQEAVWLKVFLCELGEMASDEAVKIYEDNQGSIALAKNPQFHKRTKHIDIRYHFVREKVEDGQVVLQYVSTTDMLADMMTKAIPATQFSVLRT 355          
BLAST of mRNA_D-mesarthrocarpus_Contig11050.3.1 vs. uniprot
Match: A0A6A4ZBJ3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A6A4ZBJ3_9STRA)

HSP 1 Score: 124 bits (310), Expect = 5.980e-32
Identity = 65/135 (48.15%), Postives = 94/135 (69.63%), Query Frame = 1
Query:    1 TNRSTSGYMFTMSGAAITWSSKMQPIVALSTTEAEYISLSHAAQEAIYLGNFFEELRFPEYKT-ITMYEDNMGALQLVSNKIYPARTKHIGVRFHFLRDLVQDNKIILQHVSTVNQLAHVLTKFLPLPRFQFLRS 402
            T RSTSGY F M+G  I+W SK Q  VALS+TEAEY++L+ A QEAI+L  F  E+   E K+ + +YEDN G++ L  N  +  RTKHI +R+HF+R+ V+D +++L++ ST + LA ++TK +   +F FLRS
Sbjct:  139 TRRSTSGYAFMMNGGCISWRSKKQRTVALSSTEAEYMALTEATQEAIWLKAFLCEIGEMETKSAVKIYEDNQGSIALAKNPEFHKRTKHIDIRYHFVREKVEDGQVVLEYCSTKDMLADLMTKPITAVQFDFLRS 273          
BLAST of mRNA_D-mesarthrocarpus_Contig11050.3.1 vs. uniprot
Match: H3G656_PHYRM (Uncharacterized protein n=3 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G656_PHYRM)

HSP 1 Score: 121 bits (304), Expect = 8.030e-32
Identity = 61/133 (45.86%), Postives = 92/133 (69.17%), Query Frame = 1
Query:    7 RSTSGYMFTMSGAAITWSSKMQPIVALSTTEAEYISLSHAAQEAIYLGNFFEEL-RFPEYKTITMYEDNMGALQLVSNKIYPARTKHIGVRFHFLRDLVQDNKIILQHVSTVNQLAHVLTKFLPLPRFQFLRS 402
            RSTSGY F M+G  I+W SK Q  VALS+TEAEY++LS A QEA++L  F  EL      + + +Y+DN G++ L  N  +  RTKHI +R+HF+R+ V+D +++LQ++ST + LA ++TK +   +F+ LR+
Sbjct:   88 RSTSGYAFMMNGGCISWRSKKQRTVALSSTEAEYMALSEATQEAVWLKVFLCELGEMASDEAVKIYKDNQGSIALAKNPQFHKRTKHIDIRYHFVREKVEDGQVVLQYISTTDMLADIMTKAITAVQFRVLRA 220          
BLAST of mRNA_D-mesarthrocarpus_Contig11050.3.1 vs. uniprot
Match: A0A507DNC7_9FUNG (Uncharacterized protein n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507DNC7_9FUNG)

HSP 1 Score: 122 bits (305), Expect = 1.050e-31
Identity = 65/133 (48.87%), Postives = 88/133 (66.17%), Query Frame = 1
Query:    1 TNRSTSGYMFTMSGAAITWSSKMQPIVALSTTEAEYISLSHAAQEAIYLGNFFEELRFPEYKTITMYEDNMGALQLVSNKIYPARTKHIGVRFHFLRDLVQDNKIILQHVSTVNQLAHVLTKFLPLPRFQFLR 399
            T RSTSGY+F ++GAAI+W S+ Q   ALST EAEYI+L+  A+EA+++     EL   E   + +YEDN  A++L +N  +  RTKHI VR+HFLRDLV + +I LQ++ +   LA  LTK LP P    LR
Sbjct:  103 TCRSTSGYVFMLNGAAISWKSQRQKSTALSTAEAEYIALAECAKEALWIQGLLSELSATEQTAVLIYEDNQAAIKLAANPTHHQRTKHIDVRYHFLRDLVGNERIQLQYIESKLMLADALTKPLPRPLLDDLR 235          
BLAST of mRNA_D-mesarthrocarpus_Contig11050.3.1 vs. uniprot
Match: A0A4Y9ZVS1_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Y9ZVS1_9AGAM)

HSP 1 Score: 127 bits (318), Expect = 1.330e-31
Identity = 62/134 (46.27%), Postives = 92/134 (68.66%), Query Frame = 1
Query:    7 RSTSGYMFTMSGAAITWSSKMQPIVALSTTEAEYISLSHAAQEAIYLGNFFEELRFPEYKTITMYEDNMGALQLVSNKIYPARTKHIGVRFHFLRDLVQDNKIILQHVSTVNQLAHVLTKFLPLPRFQFLRSVI 408
            RS SGY+F + G A++WSSK QPIVALS+TEAEY++++HAA+E ++   F  E+  P  K  T+Y DN  A+ L  + +Y ARTKHI +RFHF+RD+V+  ++ + +  T +  A VLTK L  P+ + +R +I
Sbjct:  410 RSISGYVFLIDGGAVSWSSKKQPIVALSSTEAEYVAMTHAAKEVLWTRAFLGEIISPFDKPTTLYADNQSAITLAKDNLYHARTKHIAIRFHFIRDIVERGEVDIVYCPTADMAADVLTKPLTRPKMEKMRGLI 543          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig11050.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
H3G5T8_PHYRM1.710e-3448.87Uncharacterized protein n=5 Tax=Phytophthora ramor... [more]
A0A6H5IWB1_9HYME1.110e-3351.22Uncharacterized protein n=1 Tax=Trichogramma brass... [more]
UPI000D3F8D866.300e-3348.15Ty1/Copia family ribonuclease HI n=1 Tax=Acinetoba... [more]
UPI001372DC101.810e-3248.12Ty1/Copia family RNAse HI domain-containing protei... [more]
A0A6H5I0U2_9HYME4.070e-3247.29Uncharacterized protein n=1 Tax=Trichogramma brass... [more]
H3GB36_PHYRM5.110e-3248.12Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A4ZBJ3_9STRA5.980e-3248.15Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
H3G656_PHYRM8.030e-3245.86Uncharacterized protein n=3 Tax=Phytophthora ramor... [more]
A0A507DNC7_9FUNG1.050e-3148.87Uncharacterized protein n=1 Tax=Powellomyces hirtu... [more]
A0A4Y9ZVS1_9AGAM1.330e-3146.27Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig11050contigD-mesarthrocarpus_Contig11050:3554..3961 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog164328.Phyra87153
PFAMsRVT_2,rve
Model size408
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.11e-28
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3QHHJ@4776|Peronosporales
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
Cds size384
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789233.4792604-CDS-D-mesarthrocarpus_Contig11050:3553..39371680789233.4792604-CDS-D-mesarthrocarpus_Contig11050:3553..3937Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig11050 3554..3937 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789233.4895723-UTR-D-mesarthrocarpus_Contig11050:3937..39611680789233.4895723-UTR-D-mesarthrocarpus_Contig11050:3937..3961Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig11050 3938..3961 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig11050.3.1prot_D-mesarthrocarpus_Contig11050.3.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig11050 3554..3937 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig11050.3.1

>prot_D-mesarthrocarpus_Contig11050.3.1 ID=prot_D-mesarthrocarpus_Contig11050.3.1|Name=mRNA_D-mesarthrocarpus_Contig11050.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=128bp
MFTMSGAAITWSSKMQPIVALSTTEAEYISLSHAAQEAIYLGNFFEELRF
PEYKTITMYEDNMGALQLVSNKIYPARTKHIGVRFHFLRDLVQDNKIILQ
HVSTVNQLAHVLTKFLPLPRFQFLRSVI
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mRNA from alignment at D-mesarthrocarpus_Contig11050:3554..3961-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig11050.3.1 ID=mRNA_D-mesarthrocarpus_Contig11050.3.1|Name=mRNA_D-mesarthrocarpus_Contig11050.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=408bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig11050:3554..3961- (Discosporangium mesarthrocarpum MT17_79)
ACCAACCGCTCCACCTCTGGCTACATGTTCACCATGTCTGGAGCTGCAAT CACCTGGTCTTCCAAAATGCAACCAATTGTGGCACTCTCCACAACGGAAG CCGAATACATTTCCCTGTCCCACGCTGCTCAGGAGGCCATCTATCTGGGC AACTTCTTCGAGGAGCTCCGCTTTCCGGAATACAAGACCATCACGATGTA CGAGGACAACATGGGGGCACTCCAGCTCGTTAGCAACAAGATCTACCCTG CAAGGACCAAGCACATCGGAGTGCGCTTCCACTTCCTTCGGGACCTCGTG CAGGACAACAAGATTATTTTGCAGCATGTTTCCACTGTAAATCAGCTAGC ACATGTATTGACAAAGTTTCTTCCGCTGCCCAGATTTCAGTTTTTGCGTT CTGTCATA
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig11050:3554..3961-

>mRNA_D-mesarthrocarpus_Contig11050.3.1 ID=mRNA_D-mesarthrocarpus_Contig11050.3.1|Name=mRNA_D-mesarthrocarpus_Contig11050.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=384bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig11050:3554..3961- (Discosporangium mesarthrocarpum MT17_79)
ATGTTCACCATGTCTGGAGCTGCAATCACCTGGTCTTCCAAAATGCAACC
AATTGTGGCACTCTCCACAACGGAAGCCGAATACATTTCCCTGTCCCACG
CTGCTCAGGAGGCCATCTATCTGGGCAACTTCTTCGAGGAGCTCCGCTTT
CCGGAATACAAGACCATCACGATGTACGAGGACAACATGGGGGCACTCCA
GCTCGTTAGCAACAAGATCTACCCTGCAAGGACCAAGCACATCGGAGTGC
GCTTCCACTTCCTTCGGGACCTCGTGCAGGACAACAAGATTATTTTGCAG
CATGTTTCCACTGTAAATCAGCTAGCACATGTATTGACAAAGTTTCTTCC
GCTGCCCAGATTTCAGTTTTTGCGTTCTGTCATA
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