mRNA_D-mesarthrocarpus_Contig11032.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig11032.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig11032.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig11032.1.1 vs. uniprot
Match: D8LSN2_ECTSI (Conserved oligomeric Golgi complex subunit 5 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSN2_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 5.460e-23
Identity = 56/73 (76.71%), Postives = 65/73 (89.04%), Query Frame = 1 
Query:  307 SAESVSSQAEITLESMSTHISRIDAAIRSHILDNEESFLGGVGSVSDLARRTEAFHMGVRNLRRSLSRIKREV 525
            SAESVSSQAEITL+SMS+HI+RI+AAIRSHILDNEE FLG VG VS+L+RRTE F  GVR LRRS +R++REV
Sbjct:   54 SAESVSSQAEITLDSMSSHIARIEAAIRSHILDNEEDFLGSVGGVSELSRRTEEFRDGVRELRRSFARVQREV 126
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BLAST of mRNA_D-mesarthrocarpus_Contig11032.1.1 vs. uniprot
Match: A0A6H5JJJ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJJ4_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 8.920e-16
Identity = 39/53 (73.58%), Postives = 45/53 (84.91%), Query Frame = 1 
Query:  352 MSTHISRIDAAIRSHILDNEESFLGGVGSVSDLARRTEAFHMGVRNLRRSLSR 510
            MS+HI+RI+AAIRSHILDNEE FLG VG VS+L+RRTE F  GVR LRRS +R
Sbjct:    1 MSSHIARIEAAIRSHILDNEEDFLGSVGGVSELSRRTEEFRDGVRELRRSFAR 53
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig11032.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LSN2_ECTSI5.460e-2376.71Conserved oligomeric Golgi complex subunit 5 n=2 T... [more]
A0A6H5JJJ4_9PHAE8.920e-1673.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig11032contigD-mesarthrocarpus_Contig11032:99..2201 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LSN2
Preferred nameCOG5
PFAMsCOG5
Model size525
Max annot lvl2759|Eukaryota
KEGG koko:K20292
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000139,GO:0000212,GO:0000226,GO:0000280,GO:0000910,GO:0000916,GO:0001675,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005783,GO:0005794,GO:0005802,GO:0006810,GO:0006888,GO:0006891,GO:0006996,GO:0006997,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007110,GO:0007111,GO:0007112,GO:0007140,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007289,GO:0007290,GO:0008150,GO:0009653,GO:0009987,GO:0010256,GO:0010927,GO:0012505,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0017119,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0030029,GO:0030036,GO:0030154,GO:0030865,GO:0030866,GO:0031032,GO:0031090,GO:0031974,GO:0031981,GO:0031984,GO:0032501,GO:0032502,GO:0032504,GO:0032506,GO:0032588,GO:0032989,GO:0032991,GO:0033206,GO:0033363,GO:0036213,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044085,GO:0044422,GO:0044424,GO:0044428,GO:0044431,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044837,GO:0046907,GO:0048193,GO:0048219,GO:0048232,GO:0048285,GO:0048468,GO:0048515,GO:0048609,GO:0048646,GO:0048856,GO:0048869,GO:0051179,GO:0051234,GO:0051301,GO:0051321,GO:0051641,GO:0051649,GO:0051704,GO:0061024,GO:0061640,GO:0061982,GO:0061983,GO:0070013,GO:0070925,GO:0070971,GO:0071840,GO:0098588,GO:0098791,GO:0099023,GO:0140013,GO:1903046
Exons2
Evalue8.95e-24
EggNOG OGsKOG2211@1|root,KOG2211@2759|Eukaryota
Ec32 ortholog descriptionConserved oligomeric Golgi complex subunit 5
Ec32 orthologEc-09_002290.1
Descriptionintra-Golgi vesicle-mediated transport
Cds size525
COG categoryJ
BRITEko00000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789232.6856368-CDS-D-mesarthrocarpus_Contig11032:98..2751680789232.6856368-CDS-D-mesarthrocarpus_Contig11032:98..275Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig11032 99..275 -
1680789232.7056444-CDS-D-mesarthrocarpus_Contig11032:1853..22011680789232.7056444-CDS-D-mesarthrocarpus_Contig11032:1853..2201Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig11032 1854..2201 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig11032.1.1prot_D-mesarthrocarpus_Contig11032.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig11032 99..2201 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig11032.1.1

>prot_D-mesarthrocarpus_Contig11032.1.1 ID=prot_D-mesarthrocarpus_Contig11032.1.1|Name=mRNA_D-mesarthrocarpus_Contig11032.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=175bp
MTGEPAPELLCRIKEDPIFRDFTDRGFDPAAFASKVVASDVSSKVGSAAM
PLNPVLGPANNDAGSKEATGIGVGVVGGDRLGGGGGLGGLGSLGPSSHEI
GSSAESVSSQAEITLESMSTHISRIDAAIRSHILDNEESFLGGVGSVSDL
ARRTEAFHMGVRNLRRSLSRIKREV
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mRNA from alignment at D-mesarthrocarpus_Contig11032:99..2201-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig11032.1.1 ID=mRNA_D-mesarthrocarpus_Contig11032.1.1|Name=mRNA_D-mesarthrocarpus_Contig11032.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=2103bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig11032:99..2201- (Discosporangium mesarthrocarpum MT17_79)
ATGACGGGGGAGCCTGCACCTGAGCTGCTCTGTCGCATAAAGGAGGACCC
GATCTTTCGGGATTTCACGGACAGAGGCTTCGACCCTGCTGCCTTTGCCA
GCAAGGTAGTGGCGTCAGATGTCAGCAGCAAGGTTGGGTCCGCTGCAATG
CCCTTGAATCCCGTGCTAGGACCTGCAAATAACGATGCAGGGTCCAAAGA
GGCTACGGGGATTGGGGTCGGCGTGGTCGGTGGCGACAGGCTGGGGGGTG
GTGGCGGACTAGGTGGCCTTGGCAGCCTTGGACCATCTTCCCATGAAATT
GGTAGCTCGGCTGAGAGCGTTTCCAGTCAAGCAGAGATCACACTAGAGGT
GAGAGAGGAGACTGATACGAGGAGGATCAAACAACGAGATATCATACAGC
GGTGTGTACGTCCAACTCGTCGATTTGTCGACATATTGATTGCGGCCAGG
TGAAGACCATGCCAGGGCATACCAGCCGATCAAGACAAAAATAATGTAAT
ATGTTGCCCTTGCACTGGGTGCGGCCGCTGTGATTTTTGCCTCCATTGAT
TGTCGAAGGCATGTTGCCCAGGAGCTGGAAAGTTGTGGCTCGGGTCAGGG
TTAGGTTCCAGGTACGTTTCCCAGAACTGTTGTGGCTTGGCCCAAACACT
CCTCGTCGGTCACGTGTGTGCCTGCCTCTCGAGCTTCTGGCCCCTTCTTT
CTAATATTAAAGTCGACGACTCCCCGGCCAAGTTTCTGCCGCACAAACTG
CTCTAAGGGAGGCGGCCCCCCTGTGTGCCTTTGTATCCTAGATCACCGTG
GCTCACAGTCAATGTGGGAGTGGAAGTGGGTCATCTGAGGCACCAAGTAA
CAATCACCCTGTCGTAGTTGCACAATAATGTGGGTGTCACAGGGCCTCAG
TGCTGGGAGACCCTCATGCTAACCTGTACGCATGGGCAGGCTCTGTCCCA
GTAATTATAGTGCCTATTTCTTTGTGGGTCGCCTCAGAAGGCAGCCTTCT
TTGTAACCCTCTTCGATAAGATGGAAGCCTGCATGCTGCACCCCTACCAG
GCATTGCGGAGGCCCTGCCGCAGCCATGACCCCTGTTTGCAACACGCTGT
GCATGGCACAAGACAGCAGTTGCGCCTCAAAATTAGTTGGTCTGCCAATC
CACACAGAGAACCTCAGTGAGATGCTTGTGGGTCAACAGCTTTACACGAT
GTTCAGTATGAAAGCATTGGGACAAGTTGCTAGAATTTCTACCTGCAGAG
CCTCTTCACCCATCCTCCAGGTCATAAGCAGTGCCCTCCGCCCACCCCCA
TTAACACACTACAGCACGGTAGATGACCCCCTACGATATGCCCCACCCCA
TGCCTAACCCTTGCCCACCCTCATTTTTCACCCCCTGCCCAATGACCAGC
CCACCCTCACTTAAAATATCATATGTGTGAGAACAACCCCAGGTTGCAGA
CCACCAAAAAATAGACTTTCCCCACCCCCCCTCTGCGACCAACTTAAAAT
ATCATATATGTGAGAACAACCCCAGATTGCAGACCACCAAGAAATAGACT
TTCCCCACCCCCCCTCTGCGACCAACTTAAAATATCATATATGTGAGAAC
AACCCCAGGTTGCAGACCACCAAGAAATAGACTTTCCCCACCCCCCCTCT
GCGACCAACTATAGTTACCCCATAGTATTCCCTGCCCCGCCCCCAGCCCA
TCCTCTCTCCCTAACCCTAACCCTAACCCTAACCCTTCGCCTTCCCTTAA
CTCACTCGCTCTCCTGCCCCATCCGATTTCCCTGCCCCTCCACCCCCCAC
CCTCCACCGCCCCTGTGGCTGTCCTTCCCCCCTTCCCCTTCCTCCTTCCC
CTTTTCCAGTTCTCCCTTCCTTACCCCCTTCCCCCCTGCCCCTTCCGTTC
CCCCTCCCCCCTCCCCCCATCTGAAGAGCATGTCCACACACATCTCCCGC
ATCGACGCAGCTATACGATCACACATCCTCGACAATGAGGAGTCCTTCCT
CGGGGGGGTGGGGAGTGTGTCTGACCTGGCCAGGAGGACTGAGGCCTTCC
ACATGGGGGTGCGGAACCTCCGCCGCTCCCTCTCACGCATCAAAAGGGAG
GTG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig11032:99..2201-

>mRNA_D-mesarthrocarpus_Contig11032.1.1 ID=mRNA_D-mesarthrocarpus_Contig11032.1.1|Name=mRNA_D-mesarthrocarpus_Contig11032.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=525bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig11032:99..2201- (Discosporangium mesarthrocarpum MT17_79)
ATGACGGGGGAGCCTGCACCTGAGCTGCTCTGTCGCATAAAGGAGGACCC
GATCTTTCGGGATTTCACGGACAGAGGCTTCGACCCTGCTGCCTTTGCCA
GCAAGGTAGTGGCGTCAGATGTCAGCAGCAAGGTTGGGTCCGCTGCAATG
CCCTTGAATCCCGTGCTAGGACCTGCAAATAACGATGCAGGGTCCAAAGA
GGCTACGGGGATTGGGGTCGGCGTGGTCGGTGGCGACAGGCTGGGGGGTG
GTGGCGGACTAGGTGGCCTTGGCAGCCTTGGACCATCTTCCCATGAAATT
GGTAGCTCGGCTGAGAGCGTTTCCAGTCAAGCAGAGATCACACTAGAGAG
CATGTCCACACACATCTCCCGCATCGACGCAGCTATACGATCACACATCC
TCGACAATGAGGAGTCCTTCCTCGGGGGGGTGGGGAGTGTGTCTGACCTG
GCCAGGAGGACTGAGGCCTTCCACATGGGGGTGCGGAACCTCCGCCGCTC
CCTCTCACGCATCAAAAGGGAGGTG
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