mRNA_D-mesarthrocarpus_Contig11.12.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig11.12.1
Unique NamemRNA_D-mesarthrocarpus_Contig11.12.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig11.12.1 vs. uniprot
Match: A0A6H5KTP6_9PHAE (Ig-like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTP6_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 7.640e-16
Identity = 61/180 (33.89%), Postives = 89/180 (49.44%), Query Frame = 3 
Query:  138 SCLPRNSLQKFVAELSRGVDATLVYHG---IMRRKRSVVLYTEDNGASLCWMESGT-GQEMPYRLPCSCLLEVKDKNRSGRDNTENPSRVLRKA---------------------------------------KVQIVWRKDPRFAKRKVTVMVCDID---PDMFTKGMLELIKQNVTLQ 539
            S  P   L +F+AELSRGV+ATLV+ G   I +++R V+LYTEDNG S+CW+++G  G   PYR+    LLEVKDK+ +G    E+ +R    A                                       ++ + W   P ++KR  TV + D+    P +FT+GM +L+  N  LQ
Sbjct:  168 SSSPPGELFRFIAELSRGVEATLVFPGLGGISKKRRPVILYTEDNGESICWIKTGANGSGEPYRIRSKTLLEVKDKSGAG-SRAESVARCGGGAHGVEGAFRSECGEQEEDARGXXXXXXXXXXXXXXXATGVRINLKWLPQPTWSKR--TVKLVDVQTACPGIFTRGMQQLLSFNSDLQ 344
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BLAST of mRNA_D-mesarthrocarpus_Contig11.12.1 vs. uniprot
Match: D8LE00_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE00_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 1.090e-13
Identity = 39/77 (50.65%), Postives = 57/77 (74.03%), Query Frame = 3 
Query:  177 ELSRGVDATLVYHG---IMRRKRSVVLYTEDNGASLCWMESGT-GQEMPYRLPCSCLLEVKDKNRSGRDNTENPSRV 395
            +LSRGV+ATLV+ G   I +++R V+LYTEDNG S+CW+++G  G   PYR+ C  LLEV+DK+ +G  + E+P+ V
Sbjct:   14 QLSRGVEATLVFPGFGGISKKRRPVILYTEDNGESICWIKTGANGSGEPYRIRCKTLLEVRDKSGAG-SSAESPATV 89
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig11.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KTP6_9PHAE7.640e-1633.89Ig-like domain-containing protein n=1 Tax=Ectocarp... [more]
D8LE00_ECTSI1.090e-1350.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig11contigD-mesarthrocarpus_Contig11:33461..34502 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1042
Hectar predicted targeting categoryother localisation
Exons1
Cds size327
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789229.064375-UTR-D-mesarthrocarpus_Contig11:33460..336811680789229.064375-UTR-D-mesarthrocarpus_Contig11:33460..33681Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig11 33461..33681 +
1680789229.0856225-UTR-D-mesarthrocarpus_Contig11:34008..345021680789229.0856225-UTR-D-mesarthrocarpus_Contig11:34008..34502Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig11 34009..34502 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789229.076089-CDS-D-mesarthrocarpus_Contig11:33681..340081680789229.076089-CDS-D-mesarthrocarpus_Contig11:33681..34008Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig11 33682..34008 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig11.12.1prot_D-mesarthrocarpus_Contig11.12.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig11 33682..34008 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig11.12.1

>prot_D-mesarthrocarpus_Contig11.12.1 ID=prot_D-mesarthrocarpus_Contig11.12.1|Name=mRNA_D-mesarthrocarpus_Contig11.12.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=109bp
MRRKRSVVLYTEDNGASLCWMESGTGQEMPYRLPCSCLLEVKDKNRSGRD
NTENPSRVLRKAKVQIVWRKDPRFAKRKVTVMVCDIDPDMFTKGMLELIK
QNVTLQDC*
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mRNA from alignment at D-mesarthrocarpus_Contig11:33461..34502+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig11.12.1 ID=mRNA_D-mesarthrocarpus_Contig11.12.1|Name=mRNA_D-mesarthrocarpus_Contig11.12.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1042bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig11:33461..34502+ (Discosporangium mesarthrocarpum MT17_79)
GCGAAGTCTGGCGCATAGTGGACTGGTGGGAAGAGATCGTGTTTGGGAAG
TTGGAGAATCAGTTTGATCACACCTGCAGAGAAAACGGGGATGCGAGGCT
GGAGGCGGAGGCGGAATGTTCGGCATGCCGTCAAGAGTCGTGTTTACCGC
GCAATTCTCTTCAAAAATTTGTTGCGGAGCTGAGCCGCGGGGTGGATGCC
ACATTGGTGTATCATGGGATAATGAGACGAAAGCGGAGCGTTGTGCTGTA
TACTGAGGACAACGGTGCATCGCTGTGCTGGATGGAAAGTGGAACGGGCC
AGGAGATGCCGTACCGATTGCCGTGCTCCTGCCTCCTGGAGGTGAAGGAC
AAAAATCGCAGCGGAAGGGACAATACCGAAAATCCCAGTAGGGTTCTAAG
GAAGGCGAAGGTGCAAATAGTGTGGCGAAAAGACCCTAGGTTCGCGAAGC
GGAAAGTCACCGTCATGGTGTGTGACATTGACCCGGATATGTTTACGAAG
GGCATGTTGGAGTTGATCAAGCAAAACGTTACTCTGCAAGACTGTTAGCC
AACTGATTTGCTCTAGGTTTTGGCCGAAACAGAGTAGCTCGTTCGCTCTT
GTTGCAAGCGGTGTTATTTATTCAATTTATGTGTGTGGACGTCATAGATC
ACATGCGCTGAGCCAATCGGCTAGTGATGCAGCTGCGCATTTTATTGTCC
TCTTCTTAAATTCGTACTATGCCTTAAGGGGTGCAATCCCTAGGAATCAC
ATTGTTGGTCAGATCGTGTTTTCTCTACGCTTTTTATCACTTTGATTGTC
TGTGGACCCCTATGAAGTTGGAATTTTTTCGTCTCGATTTAGATGTGTGG
CTTCAAGGAGAAAAGACACAGCGGTCAATTGCCCGTGCTCGTTGTGTCTC
GGGATGATTGGGTCCGGACTGAGGATTGTACGGTTTGTCAAACAGGGACC
GGTCCGTCCCGTTGTGCTTAGTACGTAGTGTATATAGTTACACGCTGTGG
GTGCTGATTTGATAATCAGGAATAATATTAATTGTAAACCTG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig11:33461..34502+

>mRNA_D-mesarthrocarpus_Contig11.12.1 ID=mRNA_D-mesarthrocarpus_Contig11.12.1|Name=mRNA_D-mesarthrocarpus_Contig11.12.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=327bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig11:33461..34502+ (Discosporangium mesarthrocarpum MT17_79)
ATGAGACGAAAGCGGAGCGTTGTGCTGTATACTGAGGACAACGGTGCATC
GCTGTGCTGGATGGAAAGTGGAACGGGCCAGGAGATGCCGTACCGATTGC
CGTGCTCCTGCCTCCTGGAGGTGAAGGACAAAAATCGCAGCGGAAGGGAC
AATACCGAAAATCCCAGTAGGGTTCTAAGGAAGGCGAAGGTGCAAATAGT
GTGGCGAAAAGACCCTAGGTTCGCGAAGCGGAAAGTCACCGTCATGGTGT
GTGACATTGACCCGGATATGTTTACGAAGGGCATGTTGGAGTTGATCAAG
CAAAACGTTACTCTGCAAGACTGTTAG
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