mRNA_D-mesarthrocarpus_Contig11.11.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig11.11.1
Unique NamemRNA_D-mesarthrocarpus_Contig11.11.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig11.11.1 vs. uniprot
Match: A0A6H5JFG2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG2_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 5.890e-30
Identity = 116/385 (30.13%), Postives = 174/385 (45.19%), Query Frame = 1
Query:    1 EEDVYVRLCDGCGDLPGRVVKLLKSLYGCKHSSRG*LNVVLGCVNLILAYYD*SLMVKYRQQLQPMLMTLLLA---------GVFEVLPSIKSGVERHLEVEDLGDFKLKMGCEVKRDRKAKSLTISQKGYTIVVCKRLGVNGALERTPYPPSRRLDGHEEDKACTGSVPYREAVGSLMWTALMTRINIASPVREVAKYCEEPKPVHWHAVLSILRYLYSLHRERHLFWRS*CML*DEWLY*RLLW--------TIPWGWEVCNRWRSDVLWWDHILDIQNTKDCGHIHH*RRVHSFEYCGSTGSIFEECVGVHPAFLTMAKVI------MFEDNECAVKLTRNSISVSRLRTKRVDVRDHFLRSLQRNGDFDVRHV*IADQRAD 1086
            EEDVY+RL  GCG L G +VKL KSLYG + +SR    ++  C+ + L +          + ++   + L+L          G  E      + + + + V++LG+ +   GC  +R+++   LTISQ+ +T  +    GV G     P     +L   + D+  T   P+RE VGSLMW A  TR +IA+ VR VA+YC  PK VHW+A + IL Y          F R          Y    +        ++  G   C      V W         T+ C  +         EY  + G + +E + +   +  M   +      +FEDN+ A++L +N IS S   +K +DVR HFLR L    +  V HV    QRAD
Sbjct:   74 EEDVYMRLPQGCGALSGMIVKLGKSLYGLRQASRQWHAMLKRCL-VALGFEQCMADACVFRLIEDGCVVLILVVHVDDIFAVGERERCDKFGADLNKSVPVKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRS-VPMSSGVKLSDFDADEVAT-EFPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGG--GAVSW------FSRTQKCVTL----STTEAEYV-ALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSN--SKHIDVRHHFLRELVERKEISVIHVPSPYQRAD 440          
BLAST of mRNA_D-mesarthrocarpus_Contig11.11.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE)

HSP 1 Score: 128 bits (321), Expect = 1.130e-29
Identity = 113/384 (29.43%), Postives = 173/384 (45.05%), Query Frame = 1
Query:    1 EEDVYVRLCDGCGDLPGRVVKLLKSLYGCKHSSR---G*LNVVLGCVNLILAYYD*SLMVKYRQQLQPMLMTLLLAGVFEV-----LPSIKSGVERHLEVEDLGDFKLKMGCEVKRDRKAKSLTISQKGYTIVVCKRLGVNGALERTPYPPSRRLDGHEEDKACTGSVPYREAVGSLMWTALMTRINIASPVREVAKYCEEPKPVHWHAVLSILRYLYSLHRERHLFWRS*CML*DEWLY*RLLW--------TIPWGWEVCNRWRSDVLWWDHILDIQNTKDCGHIHH*RRVHSFEYCGSTGSIFEECVGVHPAFLTMAK------VIMFEDNECAVKLTRNSISVSRLRTKRVDVRDHFLRSLQRNGDFDVRHV*IADQRAD 1086
            +EDV++RL +GCG L G +VKL KSLYG K +SR     L   L C+  I    D  +     +    + + + +  +F +            +   + V++LGD +   GC  +RD  A +L ISQ+ Y   +    GV    E  P P   +L   ++D+    S P+RE +GSLMW A  TR +IA+ VR VA+YC  PK +HW A L IL Y+         F R         ++    +        ++  G  +C       + W        T+ C  +         EY  S   + +E + +   +  M        + +FEDN+ A++L +N IS S   +K +DVR HF+R L    +  + HV  A Q AD
Sbjct:   50 DEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERCDQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKE-IPLPVGLKLSEFDQDEEVV-SWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCG---GGCISW-----FSRTQKCVTL----STTEAEYV-SLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSN--SKHIDVRHHFIRELVGRKEISIFHVESAYQHAD 416          
BLAST of mRNA_D-mesarthrocarpus_Contig11.11.1 vs. uniprot
Match: A0A6H5JG40_9PHAE (Integrase catalytic domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG40_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 4.400e-29
Identity = 116/385 (30.13%), Postives = 174/385 (45.19%), Query Frame = 1
Query:    1 EEDVYVRLCDGCGDLPGRVVKLLKSLYGCKHSSRG*LNVVLGCVNLILAYYD*SLMVKYRQQLQPMLMTLLLA---------GVFEVLPSIKSGVERHLEVEDLGDFKLKMGCEVKRDRKAKSLTISQKGYTIVVCKRLGVNGALERTPYPPSRRLDGHEEDKACTGSVPYREAVGSLMWTALMTRINIASPVREVAKYCEEPKPVHWHAVLSILRYLYSLHRERHLFWRS*CML*DEWLY*RLLW--------TIPWGWEVCNRWRSDVLWWDHILDIQNTKDCGHIHH*RRVHSFEYCGSTGSIFEECVGVHPAFLTMAKVI------MFEDNECAVKLTRNSISVSRLRTKRVDVRDHFLRSLQRNGDFDVRHV*IADQRAD 1086
            EEDVY+RL  GCG L G +VKL KSLYG + +SR    ++  C+ + L +          + ++   + L+L          G  E      + + + + V++LG+ +   GC  +R+++   LTISQ+ +T  +    GV G     P     +L   + D+  T   P+RE VGSLMW A  TR +IA+ VR VA+YC  PK VHW+A + IL Y          F R          Y    +        ++  G   C      V W         T+ C  +         EY  + G + +E + +   +  M   +      +FEDN+ A++L +N IS S   +K +DVR HFLR L    +  V HV    QRAD
Sbjct:  904 EEDVYMRLPQGCGALSGMIVKLGKSLYGLRQASRQWHAMLKRCL-VALGFEQCMADACVFRLIEDGCVVLILVVHVDDIFAVGERERCDKFGADLNKSVPVKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRS-VPMSSGVKLSDFDADEVAT-DFPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGG--GAVSW------FSRTQKCVTL----STTEAEYV-ALGDVVKEILFLRQIWRFMLPQVGMPCIPIFEDNQGAIQLAQNPISNSN--SKHIDVRHHFLRELVERKEISVIHVPSPYQRAD 1270          
BLAST of mRNA_D-mesarthrocarpus_Contig11.11.1 vs. uniprot
Match: A0A6H5J4N2_9PHAE (Integrase catalytic domain-containing protein n=18 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J4N2_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 4.740e-29
Identity = 116/385 (30.13%), Postives = 174/385 (45.19%), Query Frame = 1
Query:    1 EEDVYVRLCDGCGDLPGRVVKLLKSLYGCKHSSRG*LNVVLGCVNLILAYYD*SLMVKYRQQLQPMLMTLLLA---------GVFEVLPSIKSGVERHLEVEDLGDFKLKMGCEVKRDRKAKSLTISQKGYTIVVCKRLGVNGALERTPYPPSRRLDGHEEDKACTGSVPYREAVGSLMWTALMTRINIASPVREVAKYCEEPKPVHWHAVLSILRYLYSLHRERHLFWRS*CML*DEWLY*RLLW--------TIPWGWEVCNRWRSDVLWWDHILDIQNTKDCGHIHH*RRVHSFEYCGSTGSIFEECVGVHPAFLTMAKVI------MFEDNECAVKLTRNSISVSRLRTKRVDVRDHFLRSLQRNGDFDVRHV*IADQRAD 1086
            EEDVY+RL  GCG L G +VKL KSLYG + +SR    ++  C+ + L +          + ++   + L+L          G  E      + + + + V++LG+ +   GC  +R+++   LTISQ+ +T  +    GV G     P     +L   + D+  T   P+RE VGSLMW A  TR +IA+ VR VA+YC  PK VHW+A + IL Y          F R          Y    +        ++  G   C      V W         T+ C  +         EY  + G + +E + +   +  M   +      +FEDN+ A++L +N IS S   +K +DVR HFLR L    +  V HV    QRAD
Sbjct: 1410 EEDVYMRLPQGCGALSGMIVKLGKSLYGLRQASRQWHAMLKRCL-VALGFEQCMADACVFRLIEDGCVVLILVVHVDDIFAVGERERCDKFGADLNKSVPVKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRS-VPMSSGVKLSDFDADEVAT-EFPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGG--GAVSW------FSRTQKCVTL----STTEAEYV-ALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSN--SKHIDVRHHFLRELVERKEISVIHVPSPYQRAD 1776          
BLAST of mRNA_D-mesarthrocarpus_Contig11.11.1 vs. uniprot
Match: A0A6H5L867_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L867_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 4.760e-29
Identity = 116/385 (30.13%), Postives = 174/385 (45.19%), Query Frame = 1
Query:    1 EEDVYVRLCDGCGDLPGRVVKLLKSLYGCKHSSRG*LNVVLGCVNLILAYYD*SLMVKYRQQLQPMLMTLLLA---------GVFEVLPSIKSGVERHLEVEDLGDFKLKMGCEVKRDRKAKSLTISQKGYTIVVCKRLGVNGALERTPYPPSRRLDGHEEDKACTGSVPYREAVGSLMWTALMTRINIASPVREVAKYCEEPKPVHWHAVLSILRYLYSLHRERHLFWRS*CML*DEWLY*RLLW--------TIPWGWEVCNRWRSDVLWWDHILDIQNTKDCGHIHH*RRVHSFEYCGSTGSIFEECVGVHPAFLTMAKVI------MFEDNECAVKLTRNSISVSRLRTKRVDVRDHFLRSLQRNGDFDVRHV*IADQRAD 1086
            EEDVY+RL  GCG L G +VKL KSLYG + +SR    ++  C+ + L +          + ++   + L+L          G  E      + + + + V++LG+ +   GC  +R+++   LTISQ+ +T  +    GV G     P     +L   + D+  T   P+RE VGSLMW A  TR +IA+ VR VA+YC  PK VHW+A + IL Y          F R          Y    +        ++  G   C      V W         T+ C  +         EY  + G + +E + +   +  M   +      +FEDN+ A++L +N IS S   +K +DVR HFLR L    +  V HV    QRAD
Sbjct: 1196 EEDVYMRLPQGCGALSGMIVKLGKSLYGLRQASRQWHAMLKRCL-VALGFEQCMADACVFRLIEDGCVVLILVVHVDDIFAVGERERCDKFGADLNKSVPVKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRS-VPMSSGVKLSDFDADEVAT-EFPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGG--GAVSW------FSRTQKCVTL----STTEAEYV-ALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSN--SKHIDVRHHFLRELVERKEISVIHVPSPYQRAD 1562          
BLAST of mRNA_D-mesarthrocarpus_Contig11.11.1 vs. uniprot
Match: A0A6H5KBD4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBD4_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 5.040e-29
Identity = 116/385 (30.13%), Postives = 174/385 (45.19%), Query Frame = 1
Query:    1 EEDVYVRLCDGCGDLPGRVVKLLKSLYGCKHSSRG*LNVVLGCVNLILAYYD*SLMVKYRQQLQPMLMTLLLA---------GVFEVLPSIKSGVERHLEVEDLGDFKLKMGCEVKRDRKAKSLTISQKGYTIVVCKRLGVNGALERTPYPPSRRLDGHEEDKACTGSVPYREAVGSLMWTALMTRINIASPVREVAKYCEEPKPVHWHAVLSILRYLYSLHRERHLFWRS*CML*DEWLY*RLLW--------TIPWGWEVCNRWRSDVLWWDHILDIQNTKDCGHIHH*RRVHSFEYCGSTGSIFEECVGVHPAFLTMAKVI------MFEDNECAVKLTRNSISVSRLRTKRVDVRDHFLRSLQRNGDFDVRHV*IADQRAD 1086
            EEDVY+RL  GCG L G +VKL KSLYG + +SR    ++  C+ + L +          + ++   + L+L          G  E      + + + + V++LG+ +   GC  +R+++   LTISQ+ +T  +    GV G     P     +L   + D+  T   P+RE VGSLMW A  TR +IA+ VR VA+YC  PK VHW+A + IL Y          F R          Y    +        ++  G   C      V W         T+ C  +         EY  + G + +E + +   +  M   +      +FEDN+ A++L +N IS S   +K +DVR HFLR L    +  V HV    QRAD
Sbjct: 1264 EEDVYMRLPQGCGALSGMIVKLGKSLYGLRQASRQWHAMLKRCL-VALGFEQCMADACVFRLIEDGCVVLILVVHVDDIFAVGERERCDKFGADLNKSVPVKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRS-VPMSSGVKLSDFDADEVAT-EFPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGG--GAVSW------FSRTQKCVTL----STTEAEYV-ALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSN--SKHIDVRHHFLRELVERKEISVIHVPSPYQRAD 1630          
BLAST of mRNA_D-mesarthrocarpus_Contig11.11.1 vs. uniprot
Match: A0A6H5KQB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB8_9PHAE)

HSP 1 Score: 128 bits (321), Expect = 5.530e-29
Identity = 113/384 (29.43%), Postives = 173/384 (45.05%), Query Frame = 1
Query:    1 EEDVYVRLCDGCGDLPGRVVKLLKSLYGCKHSSR---G*LNVVLGCVNLILAYYD*SLMVKYRQQLQPMLMTLLLAGVFEV-----LPSIKSGVERHLEVEDLGDFKLKMGCEVKRDRKAKSLTISQKGYTIVVCKRLGVNGALERTPYPPSRRLDGHEEDKACTGSVPYREAVGSLMWTALMTRINIASPVREVAKYCEEPKPVHWHAVLSILRYLYSLHRERHLFWRS*CML*DEWLY*RLLW--------TIPWGWEVCNRWRSDVLWWDHILDIQNTKDCGHIHH*RRVHSFEYCGSTGSIFEECVGVHPAFLTMAK------VIMFEDNECAVKLTRNSISVSRLRTKRVDVRDHFLRSLQRNGDFDVRHV*IADQRAD 1086
            +EDV++RL +GCG L G +VKL KSLYG K +SR     L   L C+  I    D  +     +    + + + +  +F +            +   + V++LGD +   GC  +RD  A +L ISQ+ Y   +    GV    E  P P   +L   ++D+    S P+RE +GSLMW A  TR +IA+ VR VA+YC  PK +HW A L IL Y+         F R         ++    +        ++  G  +C       + W        T+ C  +         EY  S   + +E + +   +  M        + +FEDN+ A++L +N IS S   +K +DVR HF+R L    +  + HV  A Q AD
Sbjct:  224 DEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERCDQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKE-IPLPVGLKLSEFDQDEEVV-SWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCG---GGCISW-----FSRTQKCVTL----STTEAEYV-SLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSN--SKHIDVRHHFIRELVGRKEISIFHVESAYQHAD 590          
BLAST of mRNA_D-mesarthrocarpus_Contig11.11.1 vs. uniprot
Match: A0A6H5JEF2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEF2_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 1.480e-28
Identity = 108/384 (28.12%), Postives = 175/384 (45.57%), Query Frame = 1
Query:    1 EEDVYVRLCDGCGDLPGRVVKLLKSLYGCKHSSRG*LNVVLGCVNLILAYYD*SLMVKYRQQLQPMLMTLLLAGVFEVLP--------SIKSGVERHLEVEDLGDFKLKMGCEVKRDRKAKSLTISQKGYTIVVCKRLGVNGALERTPYPPSRRLDGHEEDKACTGSVPYREAVGSLMWTALMTRINIASPVREVAKYCEEPKPVHWHAVLSILRYL-----YSLHRERHLFWRS*CML*DEWLY*RLLW---TIPWGWEVCNRWRSDVLWWDHILDIQNTKDCGHIHH*RRVHSFEYCGSTGSIFEECVGVHPAFLTMAK------VIMFEDNECAVKLTRNSISVSRLRTKRVDVRDHFLRSLQRNGDFDVRHV*IADQRAD 1086
            +EDV++RL  GCG L G +VKL KSLYG K +SR   + +  C+ L+      +    +R   +  ++ +++  V ++               +   + V++LG+ +    C  +RD +   L ISQ+ +   +    G+       P P S +L   +E++AC   VP+RE VGSLMW A  TR +IA+ VR VA+YC  PK VHW A L IL Y+       +  ER +       +  +  Y        ++  G  +C      V W         T+ C  +         EY  +   + +E + +   +  M        + +FEDN+ A+++  N I+ S   +K +DVR HF+R L    +  + HV    Q AD
Sbjct:   50 DEDVFMRLPQGCGRLSGLIVKLCKSLYGLKQASRHWHSHLTRCLLLLGFLQCLADACVFRLMEEGRVIMIIVVHVDDIFAVGQKERCDKFGEDLNEMVPVKNLGELRWYSACFYERDVERGLLRISQQRFAEELAAEYGIEWGRS-VPLPVSVKLTDFDENEACA-DVPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGG--GCVTW------FSRTQKCVTL----STTEAEYV-AIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSN--SKHIDVRHHFIRELVERKEISITHVPTHFQHAD 416          
BLAST of mRNA_D-mesarthrocarpus_Contig11.11.1 vs. uniprot
Match: A0A6H5JHY5_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHY5_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 1.520e-28
Identity = 112/384 (29.17%), Postives = 171/384 (44.53%), Query Frame = 1
Query:    1 EEDVYVRLCDGCGDLPGRVVKLLKSLYGCKHSSR---G*LNVVLGCVNLILAYYD*SLMVKYRQQLQPMLMTLLLAGVFEV-----LPSIKSGVERHLEVEDLGDFKLKMGCEVKRDRKAKSLTISQKGYTIVVCKRLGVNGALERTPYPPSRRLDGHEEDKACTGSVPYREAVGSLMWTALMTRINIASPVREVAKYCEEPKPVHWHAVLSILRYLYSLHRERHLFWRS*CML*DEWLY*RLLW--------TIPWGWEVCNRWRSDVLWWDHILDIQNTKDCGHIHH*RRVHSFEYCGSTGSIFEECVGVHPAFLTMAK------VIMFEDNECAVKLTRNSISVSRLRTKRVDVRDHFLRSLQRNGDFDVRHV*IADQRAD 1086
            EEDV++RL  GCG L G +VKL KSLYG K +SR     L   L  +  +    D  +          M++ + +  +F V          S +   + V++LG+ +    C  +RD +   L ISQ+ +   +    GV    +  P P S +L   +E++AC   VP+RE VGSLMW A  TR +IA+ VR VA+YC  PK VHW A L IL Y+         F R         ++    +        ++  G  +C      V W         T+ C  +         EY  +   + +E + +   +  M        + +FEDN+ A+++  N I+ S   +K +DVR HF+R L    +  + HV    Q AD
Sbjct: 1084 EEDVFLRLPQGCGRLSGMIVKLCKSLYGLKQASRQWHAHLTRCLLLLGFVRCLADACVFRLMEDGCVIMIIVVHVDDIFAVGQKERCDKFGSDLNEMVPVKNLGELRWYSACFYQRDLERGLLRISQQRFAEELAAEYGVEWG-KSVPLPVSVKLTDFDENEACA-DVPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKAADRRSVSGGLVMCGG--GCVTW------FSRTQKCVTL----STTEAEYV-AIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSN--SKHIDVRHHFIRELVERKEISITHVTSEFQHAD 1450          
BLAST of mRNA_D-mesarthrocarpus_Contig11.11.1 vs. uniprot
Match: A0A6H5K2R1_9PHAE (Integrase catalytic domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2R1_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 3.490e-28
Identity = 112/384 (29.17%), Postives = 173/384 (45.05%), Query Frame = 1
Query:    1 EEDVYVRLCDGCGDLPGRVVKLLKSLYGCKHSSR---G*LNVVLGCVNLILAYYD*SLMVKYRQQLQPMLMTLLLAGVFEV-----LPSIKSGVERHLEVEDLGDFKLKMGCEVKRDRKAKSLTISQKGYTIVVCKRLGVNGALERTPYPPSRRLDGHEEDKACTGSVPYREAVGSLMWTALMTRINIASPVREVAKYCEEPKPVHWHAVLSILRYLYSLHRERHLFWRS*CML*DEWLY*RLLW--------TIPWGWEVCNRWRSDVLWWDHILDIQNTKDCGHIHH*RRVHSFEYCGSTGSIFEECVGVHPAFLTMAK------VIMFEDNECAVKLTRNSISVSRLRTKRVDVRDHFLRSLQRNGDFDVRHV*IADQRAD 1086
            +EDV++RL +GCG L G +VKL KSLYG K +SR     L   L C+  I    D  +     +    + + + +  +F +            +   + V++LGD +   GC  +RD  A +L ISQ+ Y   +    GV    E  P P   +L   ++D+    S P+RE +GSLMW A  TR +IA+ VR VA+YC  PK +HW A L IL Y+         F R         ++    +        ++  G  +C       + W        T+ C  +         EY  S   + +E + +   +  M        + +FEDN+ A++L +N IS S   +K +DVR HF+R L    +  + HV  A Q A+
Sbjct:  745 DEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERCDQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKE-IPLPVGLKLSEFDQDEEVV-SWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCG---GGCISW-----FSRTQKCVTL----STTEAEYV-SLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSN--SKHIDVRHHFIRELVGRKEISIFHVESAYQHAE 1111          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig11.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JFG2_9PHAE5.890e-3030.13Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JLN0_9PHAE1.130e-2929.43Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JG40_9PHAE4.400e-2930.13Integrase catalytic domain-containing protein n=3 ... [more]
A0A6H5J4N2_9PHAE4.740e-2930.13Integrase catalytic domain-containing protein n=18... [more]
A0A6H5L867_9PHAE4.760e-2930.13Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KBD4_9PHAE5.040e-2930.13Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KQB8_9PHAE5.530e-2929.43Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JEF2_9PHAE1.480e-2828.13Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JHY5_9PHAE1.520e-2829.17Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5K2R1_9PHAE3.490e-2829.17Integrase catalytic domain-containing protein n=3 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig11contigD-mesarthrocarpus_Contig11:30445..31534 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog164328.Phyra71619
Model size1090
Max annot lvl164328.Phyra71619|-
Hectar predicted targeting categorysignal peptide
Exons1
Evalue4.53e-18
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3QHW0@4776|Peronosporales
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
Cds size504
COG categoryL
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789228.9988658-UTR-D-mesarthrocarpus_Contig11:30444..306091680789228.9988658-UTR-D-mesarthrocarpus_Contig11:30444..30609Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig11 30445..30609 +
1680789229.0248878-UTR-D-mesarthrocarpus_Contig11:31113..315341680789229.0248878-UTR-D-mesarthrocarpus_Contig11:31113..31534Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig11 31114..31534 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789229.0105693-CDS-D-mesarthrocarpus_Contig11:30609..311131680789229.0105693-CDS-D-mesarthrocarpus_Contig11:30609..31113Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig11 30610..31113 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig11.11.1prot_D-mesarthrocarpus_Contig11.11.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig11 30610..31113 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig11.11.1

>prot_D-mesarthrocarpus_Contig11.11.1 ID=prot_D-mesarthrocarpus_Contig11.11.1|Name=mRNA_D-mesarthrocarpus_Contig11.11.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=168bp
MVKYRQQLQPMLMTLLLAGVFEVLPSIKSGVERHLEVEDLGDFKLKMGCE
VKRDRKAKSLTISQKGYTIVVCKRLGVNGALERTPYPPSRRLDGHEEDKA
CTGSVPYREAVGSLMWTALMTRINIASPVREVAKYCEEPKPVHWHAVLSI
LRYLYSLHRERHLFWRS*
back to top

mRNA from alignment at D-mesarthrocarpus_Contig11:30445..31534+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig11.11.1 ID=mRNA_D-mesarthrocarpus_Contig11.11.1|Name=mRNA_D-mesarthrocarpus_Contig11.11.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1090bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig11:30445..31534+ (Discosporangium mesarthrocarpum MT17_79)
GAGGAAGACGTATATGTTAGATTGTGTGACGGGTGTGGGGATCTACCCGG TAGGGTCGTTAAGCTACTCAAGTCTCTGTATGGATGCAAACATAGCTCAC GGGGTTGACTGAATGTGGTTTTGGGTTGTGTGAATCTGATACTTGCATAC TACGACTAGTCGTTGATGGTGAAGTATAGGCAGCAATTGCAGCCCATGTT GATGACTTTGTTGCTTGCAGGAGTTTTTGAAGTGTTGCCAAGTATCAAGT CTGGAGTAGAAAGACATTTGGAGGTTGAGGACCTGGGGGACTTCAAGTTA AAAATGGGGTGTGAAGTGAAAAGGGATAGAAAAGCAAAAAGTCTAACCAT CAGCCAGAAAGGGTACACAATTGTGGTCTGCAAACGCTTAGGAGTCAATG GAGCCCTGGAGCGGACCCCATACCCTCCTTCAAGGAGACTGGATGGGCAT GAGGAGGACAAAGCTTGCACTGGGAGTGTACCATACCGGGAGGCGGTGGG AAGTTTGATGTGGACAGCATTGATGACCAGGATTAACATTGCAAGTCCTG TGCGTGAAGTAGCAAAGTACTGTGAGGAACCCAAGCCTGTGCATTGGCAT GCTGTGTTGTCTATTCTAAGGTACTTGTATTCCTTGCACAGAGAGAGGCA TTTGTTTTGGAGGTCCTGATGCATGCTGTAAGATGAGTGGCTATACTGAC GCTTGCTATGGACCATACCTTGGGGATGGGAGGTCTGTAACCGGTGGAGA AGTGATGTTCTATGGTGGGACCATATCTTGGATATCCAAAACACAAAAGA TTGTGGCCACATCCACCACTGAAGGCGAGTACATAGCTTTGAGTACTGTG GGTCAACAGGTTCTATTTTTGAGGAATGTGTGGGAGTTCATCCAGCCTTC TTAACCATGGCAAAAGTTATCATGTTTGAGGACAATGAATGTGCTGTAAA GCTGACAAGAAATTCAATCAGTGTTTCACGCTTGCGCACAAAACGCGTTG ATGTTAGGGACCACTTTCTAAGAAGCCTGCAGAGAAATGGAGATTTTGAT GTGCGCCATGTTTAGATAGCTGACCAGCGTGCTGACCCGC
back to top

Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig11:30445..31534+

>mRNA_D-mesarthrocarpus_Contig11.11.1 ID=mRNA_D-mesarthrocarpus_Contig11.11.1|Name=mRNA_D-mesarthrocarpus_Contig11.11.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=504bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig11:30445..31534+ (Discosporangium mesarthrocarpum MT17_79)
ATGGTGAAGTATAGGCAGCAATTGCAGCCCATGTTGATGACTTTGTTGCT
TGCAGGAGTTTTTGAAGTGTTGCCAAGTATCAAGTCTGGAGTAGAAAGAC
ATTTGGAGGTTGAGGACCTGGGGGACTTCAAGTTAAAAATGGGGTGTGAA
GTGAAAAGGGATAGAAAAGCAAAAAGTCTAACCATCAGCCAGAAAGGGTA
CACAATTGTGGTCTGCAAACGCTTAGGAGTCAATGGAGCCCTGGAGCGGA
CCCCATACCCTCCTTCAAGGAGACTGGATGGGCATGAGGAGGACAAAGCT
TGCACTGGGAGTGTACCATACCGGGAGGCGGTGGGAAGTTTGATGTGGAC
AGCATTGATGACCAGGATTAACATTGCAAGTCCTGTGCGTGAAGTAGCAA
AGTACTGTGAGGAACCCAAGCCTGTGCATTGGCATGCTGTGTTGTCTATT
CTAAGGTACTTGTATTCCTTGCACAGAGAGAGGCATTTGTTTTGGAGGTC
CTGA
back to top