mRNA_D-mesarthrocarpus_Contig10945.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10945.2.1
Unique NamemRNA_D-mesarthrocarpus_Contig10945.2.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig10945.2.1 vs. uniprot
Match: A0A3Q4G710_NEOBR (Uncharacterized protein n=1 Tax=Neolamprologus brichardi TaxID=32507 RepID=A0A3Q4G710_NEOBR)

HSP 1 Score: 79.3 bits (194), Expect = 1.830e-17
Identity = 34/80 (42.50%), Postives = 47/80 (58.75%), Query Frame = 1
Query:    1 HSDFVLDVRYDYYGKRLATCSADQGYAFCCLVLTCSNFPHAASVLGYFMWQGMIWRLAWAHPEFGQIIATCSADRMVKIW 240
            H D + DV YD++G+R+ATCS+DQ      LVL   +              G +WR+ WAHPEFGQ++A+CS DR   +W
Sbjct:   11 HKDLIHDVSYDFHGRRMATCSSDQSVKVSSLVLVAHD--------------GSVWRVTWAHPEFGQVLASCSFDRTAAVW 76          
BLAST of mRNA_D-mesarthrocarpus_Contig10945.2.1 vs. uniprot
Match: A0A7S3D420_9EUKA (Hypothetical protein n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3D420_9EUKA)

HSP 1 Score: 81.6 bits (200), Expect = 9.930e-17
Identity = 35/80 (43.75%), Postives = 52/80 (65.00%), Query Frame = 1
Query:    1 HSDFVLDVRYDYYGKRLATCSADQGYAFCCLVLTCSNFPHAASVLGYFMWQGMIWRLAWAHPEFGQIIATCSADRMVKIW 240
            H D + D ++DYYGKRLATCS+D+    C   ++  N    A +LG+   +G +W+L+WAHP+FG +I +C  DR V +W
Sbjct:   12 HQDMIHDAQFDYYGKRLATCSSDK--KICIFDVSGENHTKVAELLGH---EGPVWQLSWAHPKFGSMIVSCGYDRKVIVW 86          
BLAST of mRNA_D-mesarthrocarpus_Contig10945.2.1 vs. uniprot
Match: A0A022Q193_ERYGU (Uncharacterized protein n=1 Tax=Erythranthe guttata TaxID=4155 RepID=A0A022Q193_ERYGU)

HSP 1 Score: 81.3 bits (199), Expect = 1.350e-16
Identity = 39/80 (48.75%), Postives = 52/80 (65.00%), Query Frame = 1
Query:    1 HSDFVLDVRYDYYGKRLATCSADQGYAFCCLVLTCSNFPHAASVLGYFMWQGMIWRLAWAHPEFGQIIATCSADRMVKIW 240
            H D V DV  DYYGKRLAT S+D       + +T SN  H A++ G+   QG +W++AWAHP+FG ++A+CS D  V IW
Sbjct:   10 HQDIVHDVTMDYYGKRLATASSDNTIKI--IGVTTSNSQHLATLTGH---QGPVWQVAWAHPKFGSLLASCSYDGKVIIW 84          
BLAST of mRNA_D-mesarthrocarpus_Contig10945.2.1 vs. uniprot
Match: A0A388KC73_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KC73_CHABU)

HSP 1 Score: 80.1 bits (196), Expect = 3.460e-16
Identity = 39/80 (48.75%), Postives = 51/80 (63.75%), Query Frame = 1
Query:    1 HSDFVLDVRYDYYGKRLATCSADQGYAFCCLVLTCSNFPHAASVLGYFMWQGMIWRLAWAHPEFGQIIATCSADRMVKIW 240
            HSD V DV+ DYYGKRLATCS+D+        +      H A + G+   +G IW +AWAHP+FG ++A+CS DR V IW
Sbjct:   12 HSDVVHDVQLDYYGKRLATCSSDRLVKI--FNVAGDQQSHVADLAGH---EGPIWEVAWAHPKFGNLLASCSYDRRVIIW 86          
BLAST of mRNA_D-mesarthrocarpus_Contig10945.2.1 vs. uniprot
Match: UPI000CEAB35F (nucleoporin SEH1 n=1 Tax=Salvelinus alpinus TaxID=8036 RepID=UPI000CEAB35F)

HSP 1 Score: 75.5 bits (184), Expect = 3.570e-16
Identity = 33/80 (41.25%), Postives = 47/80 (58.75%), Query Frame = 1
Query:    1 HSDFVLDVRYDYYGKRLATCSADQGYAFCCLVLTCSNFPHAASVLGYFMWQGMIWRLAWAHPEFGQIIATCSADRMVKIW 240
            H D + DV YD++G+R+ATCS+DQ       V   S+         +    G +WR+ WAHPEFGQ++A+CS DR   +W
Sbjct:   11 HKDLIHDVSYDFHGRRMATCSSDQSVK----VWDKSDNGEWNCTASWKTHSGSVWRVTWAHPEFGQVLASCSFDRTAAVW 86          
BLAST of mRNA_D-mesarthrocarpus_Contig10945.2.1 vs. uniprot
Match: A9NQI2_PICSI (Uncharacterized protein n=3 Tax=Picea sitchensis TaxID=3332 RepID=A9NQI2_PICSI)

HSP 1 Score: 80.1 bits (196), Expect = 4.500e-16
Identity = 41/81 (50.62%), Postives = 53/81 (65.43%), Query Frame = 1
Query:    1 HSDFVLDVRYDYYGKRLATCSADQGYAFCCLVLTCSNFPHA-ASVLGYFMWQGMIWRLAWAHPEFGQIIATCSADRMVKIW 240
            H D V DV  DYYGKR+ATCSAD+        L  S+ P   AS+ G+   +G +W++AWAHP+FG I+A+CS DR V IW
Sbjct:   17 HQDVVHDVTMDYYGKRIATCSADRTIKL--FGLNASDTPTLLASLTGH---EGPVWQVAWAHPKFGSILASCSYDRRVIIW 92          
BLAST of mRNA_D-mesarthrocarpus_Contig10945.2.1 vs. uniprot
Match: A0A7S1MVM2_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1MVM2_HEMAN)

HSP 1 Score: 79.7 bits (195), Expect = 6.750e-16
Identity = 37/80 (46.25%), Postives = 53/80 (66.25%), Query Frame = 1
Query:    1 HSDFVLDVRYDYYGKRLATCSADQGYAFCCLVLTCSNFPHAASVLGYFMWQGMIWRLAWAHPEFGQIIATCSADRMVKIW 240
            H D + D++ DYYGKRLATCS+D       +     N   +AS++G+   +G IW++AWAHP+FG I+A+CS DR V +W
Sbjct:   26 HEDMIHDLQLDYYGKRLATCSSDATIKVFEVGPENGNQTLSASIVGH---EGPIWQIAWAHPKFGAILASCSYDRRVCVW 102          
BLAST of mRNA_D-mesarthrocarpus_Contig10945.2.1 vs. uniprot
Match: A0A2K1INW9_PHYPA (Uncharacterized protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1INW9_PHYPA)

HSP 1 Score: 79.3 bits (194), Expect = 7.460e-16
Identity = 41/82 (50.00%), Postives = 54/82 (65.85%), Query Frame = 1
Query:    1 HSDFVLDVRYDYYGKRLATCSADQGYAFCCLVLTCSNFPHAA--SVLGYFMWQGMIWRLAWAHPEFGQIIATCSADRMVKIW 240
            H D V DV  DYYGKRLATCS+D+      L  + S  P +A  ++ G+   +G IW++AWAHP+FG I+A+CS DR V IW
Sbjct:   14 HQDVVHDVAVDYYGKRLATCSSDRLVKVFALGASGSTPPSSALATLSGH---EGPIWQVAWAHPKFGNILASCSYDRKVIIW 92          
BLAST of mRNA_D-mesarthrocarpus_Contig10945.2.1 vs. uniprot
Match: UPI001643D874 (nucleoporin SEH1 n=1 Tax=Neolamprologus brichardi TaxID=32507 RepID=UPI001643D874)

HSP 1 Score: 75.1 bits (183), Expect = 9.460e-16
Identity = 33/80 (41.25%), Postives = 46/80 (57.50%), Query Frame = 1
Query:    1 HSDFVLDVRYDYYGKRLATCSADQGYAFCCLVLTCSNFPHAASVLGYFMWQGMIWRLAWAHPEFGQIIATCSADRMVKIW 240
            H D + DV YD++G+R+ATCS+DQ       V   S          +    G +WR+ WAHPEFGQ++A+CS DR   +W
Sbjct:   11 HKDLIHDVSYDFHGRRMATCSSDQSVK----VWDKSENGEWHCTASWKTHSGSVWRVTWAHPEFGQVLASCSFDRTAAVW 86          
BLAST of mRNA_D-mesarthrocarpus_Contig10945.2.1 vs. uniprot
Match: A0A0D6R9Q3_ARACU (Uncharacterized protein n=2 Tax=Araucariaceae TaxID=25664 RepID=A0A0D6R9Q3_ARACU)

HSP 1 Score: 79.0 bits (193), Expect = 1.060e-15
Identity = 38/80 (47.50%), Postives = 52/80 (65.00%), Query Frame = 1
Query:    1 HSDFVLDVRYDYYGKRLATCSADQGYAFCCLVLTCSNFPHAASVLGYFMWQGMIWRLAWAHPEFGQIIATCSADRMVKIW 240
            H D V D+  DYYGKRLATCSAD+      L  T  N    A++ G+   +G +W++AWAHP+FG ++A+CS DR V +W
Sbjct:   17 HQDVVHDIAIDYYGKRLATCSADRTIKLFGLS-TSDNPTPLATLTGH---EGPVWQVAWAHPKFGSLLASCSYDRRVIVW 92          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10945.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3Q4G710_NEOBR1.830e-1742.50Uncharacterized protein n=1 Tax=Neolamprologus bri... [more]
A0A7S3D420_9EUKA9.930e-1743.75Hypothetical protein n=1 Tax=Palpitomonas bilix Ta... [more]
A0A022Q193_ERYGU1.350e-1648.75Uncharacterized protein n=1 Tax=Erythranthe guttat... [more]
A0A388KC73_CHABU3.460e-1648.75Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
UPI000CEAB35F3.570e-1641.25nucleoporin SEH1 n=1 Tax=Salvelinus alpinus TaxID=... [more]
A9NQI2_PICSI4.500e-1650.62Uncharacterized protein n=3 Tax=Picea sitchensis T... [more]
A0A7S1MVM2_HEMAN6.750e-1646.25Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
A0A2K1INW9_PHYPA7.460e-1650.00Uncharacterized protein n=2 Tax=Physcomitrium pate... [more]
UPI001643D8749.460e-1641.25nucleoporin SEH1 n=1 Tax=Neolamprologus brichardi ... [more]
A0A0D6R9Q3_ARACU1.060e-1547.50Uncharacterized protein n=2 Tax=Araucariaceae TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10945contigD-mesarthrocarpus_Contig10945:2424..3349 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog4155.Migut.I00907.1.p
PFAMsWD40
Model size240
Max annot lvl35493|Streptophyta
KEGG koko:K14004
KEGG Pathwayko03013,ko04141,ko04150,map03013,map04141,map04150
KEGG ModuleM00404,M00427
Hectar predicted targeting categoryother localisation
GOsGO:0000323,GO:0002376,GO:0002474,GO:0002478,GO:0002495,GO:0002504,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0005654,GO:0005737,GO:0005764,GO:0005765,GO:0005773,GO:0005774,GO:0005783,GO:0005789,GO:0005798,GO:0005829,GO:0006810,GO:0006886,GO:0006888,GO:0006900,GO:0006901,GO:0006903,GO:0006996,GO:0008104,GO:0008150,GO:0009966,GO:0009967,GO:0009987,GO:0010646,GO:0010647,GO:0012505,GO:0012506,GO:0012507,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0019882,GO:0019884,GO:0019886,GO:0022607,GO:0023051,GO:0023056,GO:0030117,GO:0030120,GO:0030127,GO:0030133,GO:0030134,GO:0030135,GO:0030658,GO:0030659,GO:0030660,GO:0030662,GO:0031080,GO:0031090,GO:0031410,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0031982,GO:0031984,GO:0032006,GO:0032008,GO:0032991,GO:0033036,GO:0034613,GO:0034622,GO:0035459,GO:0035859,GO:0042175,GO:0042802,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048002,GO:0048193,GO:0048194,GO:0048199,GO:0048207,GO:0048208,GO:0048475,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0051179,GO:0051234,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051668,GO:0061024,GO:0061700,GO:0065003,GO:0065007,GO:0070013,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0090110,GO:0090114,GO:0097708,GO:0098588,GO:0098796,GO:0098805,GO:0098827,GO:0098852,GO:1902531,GO:1902533
Exons2
Evalue2.22e-17
EggNOG OGsKOG1332@1|root,KOG1332@2759|Eukaryota,37JU8@33090|Viridiplantae,3GECF@35493|Streptophyta,44HA5@71274|asterids
DescriptionBelongs to the WD repeat SEC13 family
Cds size240
COG categoryU
BRITEko00000,ko00001,ko00002,ko03019,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789224.8951886-CDS-D-mesarthrocarpus_Contig10945:2423..24941680789224.8951886-CDS-D-mesarthrocarpus_Contig10945:2423..2494Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10945 2424..2494 +
1680789224.9109778-CDS-D-mesarthrocarpus_Contig10945:3180..33491680789224.9109778-CDS-D-mesarthrocarpus_Contig10945:3180..3349Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10945 3181..3349 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10945.2.1prot_D-mesarthrocarpus_Contig10945.2.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10945 2424..3349 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10945.2.1

>prot_D-mesarthrocarpus_Contig10945.2.1 ID=prot_D-mesarthrocarpus_Contig10945.2.1|Name=mRNA_D-mesarthrocarpus_Contig10945.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=80bp
HSDFVLDVRYDYYGKRLATCSADQGYAFCCLVLTCSNFPHAASVLGYFMW
QGMIWRLAWAHPEFGQIIATCSADRMVKIW
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mRNA from alignment at D-mesarthrocarpus_Contig10945:2424..3349+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10945.2.1 ID=mRNA_D-mesarthrocarpus_Contig10945.2.1|Name=mRNA_D-mesarthrocarpus_Contig10945.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=926bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10945:2424..3349+ (Discosporangium mesarthrocarpum MT17_79)
CACAGCGATTTTGTTCTCGATGTCAGATATGACTACTATGGAAAACGGCT GGCCACCTGCTCGGCGGATCAGTCGGTGCGGGTCAGGGACCTCAATGAGA AGGGGCAGTGGGTCGTGCGGGAGGGCGGGGAGTGGAAGAGCGCTCACCAG GTGACACATATGTGAAAAAAATAGTGAAGTCGAAGAGTGGGATTGCTGAC CTGGGTAAGCTAGCTCCTGGATTTGGCAGGGACGAGTAAATAGGCCAGGG CACTCGACATGCTCAAGGTGAAGATACGGTGTTTGCGCTATCTCGTAACC CTTTCGAGGGTTGGTAAGCCGCACAGCGCCTAGTATTGGTATCCACGTGC GCTATTTGGAGTTTTAGGGGAAGTGACCATTTGCTTAGCCGTTAAGGCGA GTGGCGACGCGTGCTGCAGGCTGGTGTGGCAGTGGTGAACTGACAACAGT GCTGACGTCGAGGAAGAGACGCACCCCCCAGAAAAAGATTGATCGACAGA AGCCGTGACCCACAACCCGGATGTGGGGCATTTGATCTCGCTGTAACGTG TCTGCTATGCCGAGTTCCTGAAAATTAATCTTGTTTGCACGCGAATGCCT CGACTGGGCCACCGTGCTGTCCTTGCGCCGCACCCTAGGCTTAGGAATCC CCAAAGGTTCCATCCTTCTGAGTTTCTTTCGGTTACTGGTGATTTGTTGG TCTTAAACCGCAGCCTGCTGACCCCTGCTTCCACGGGATCCACCCCTGTG AGTCAAGAGGGTATGCATTTTGTTGTCTGGTATTGACATGCTCCAATTTT CCGCACGCGGCATCCGTGCTTGGCTATTTTATGTGGCAGGGAATGATATG GCGACTGGCGTGGGCGCACCCGGAGTTTGGACAGATCATCGCCACCTGCT CGGCGGATCGTATGGTCAAGATATGG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10945:2424..3349+

>mRNA_D-mesarthrocarpus_Contig10945.2.1 ID=mRNA_D-mesarthrocarpus_Contig10945.2.1|Name=mRNA_D-mesarthrocarpus_Contig10945.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=240bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10945:2424..3349+ (Discosporangium mesarthrocarpum MT17_79)
CACAGCGATTTTGTTCTCGATGTCAGATATGACTACTATGGAAAACGGCT
GGCCACCTGCTCGGCGGATCAAGGGTATGCATTTTGTTGTCTGGTATTGA
CATGCTCCAATTTTCCGCACGCGGCATCCGTGCTTGGCTATTTTATGTGG
CAGGGAATGATATGGCGACTGGCGTGGGCGCACCCGGAGTTTGGACAGAT
CATCGCCACCTGCTCGGCGGATCGTATGGTCAAGATATGG
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