mRNA_D-mesarthrocarpus_Contig10944.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10944.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10944.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig10944.1.1 vs. uniprot
Match: A0A6H5KCZ9_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCZ9_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 3.920e-12
Identity = 34/79 (43.04%), Postives = 48/79 (60.76%), Query Frame = 1
Query:    4 VRRRTPFEVWTGRIPKLHHLKVSGATAFVHVETRKTKLLQRGWEGRFVGHSIDSPAYLVWRPGTTQIFRSRDLTIFNEL 240
            +   TP+    G+   L HL+V G+TAFVH+ET K+KL  R W G  +G+S DS AY V+ P T +I  SR++T    +
Sbjct:  194 LNNETPYYRMFGKQASLRHLRVIGSTAFVHLETYKSKLANRAWPGILIGYSPDSRAYRVFNPRTKRIVHSRNVTFIEPM 272          
BLAST of mRNA_D-mesarthrocarpus_Contig10944.1.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 3.630e-11
Identity = 33/79 (41.77%), Postives = 48/79 (60.76%), Query Frame = 1
Query:    4 VRRRTPFEVWTGRIPKLHHLKVSGATAFVHVETRKTKLLQRGWEGRFVGHSIDSPAYLVWRPGTTQIFRSRDLTIFNEL 240
            +   TP+    G+   L HL+V G++AFVHVET K+KL  R W G  VG+S +S AY ++ P T +I  SR++T    +
Sbjct:  676 LNNETPYYRMFGKQASLRHLRVIGSSAFVHVETYKSKLANRAWPGILVGYSPNSNAYRIYNPHTKRIVPSRNVTFIEPM 754          
BLAST of mRNA_D-mesarthrocarpus_Contig10944.1.1 vs. uniprot
Match: A0A6H5FUQ5_9HEMI (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5FUQ5_9HEMI)

HSP 1 Score: 65.5 bits (158), Expect = 4.250e-10
Identity = 33/100 (33.00%), Postives = 57/100 (57.00%), Query Frame = 1
Query:   13 RTPFEVWTGRIPKLHHLKVSGATAFVHV-ETRKTKLLQRGWEGRFVGHSIDSPAYLVWRPGTTQIFRSRDLTIFNELTFQPQDQIQASTNGPPPVEIGHL 309
            +TP+E+W G  P++HHL++ G T + H+ + ++TK  ++  +G  +G+  D   Y +W     Q+ RSRD+ IFNE     +D   A+T  P P ++   
Sbjct:  153 KTPYEIWYGTKPRVHHLRIIGTTCYAHIPKPQRTKFQKKARKGILIGYDGDE-GYRIWCQKNLQLIRSRDV-IFNEEPLTTEDI--ATTRRPDPQQLNEF 248          
BLAST of mRNA_D-mesarthrocarpus_Contig10944.1.1 vs. uniprot
Match: A0A6H5GIQ8_9HEMI (Uncharacterized protein (Fragment) n=2 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5GIQ8_9HEMI)

HSP 1 Score: 65.5 bits (158), Expect = 4.380e-10
Identity = 33/100 (33.00%), Postives = 57/100 (57.00%), Query Frame = 1
Query:   13 RTPFEVWTGRIPKLHHLKVSGATAFVHV-ETRKTKLLQRGWEGRFVGHSIDSPAYLVWRPGTTQIFRSRDLTIFNELTFQPQDQIQASTNGPPPVEIGHL 309
            +TP+E+W G  P++HHL++ G T + H+ + ++TK  ++  +G  +G+  D   Y +W     Q+ RSRD+ IFNE     +D   A+T  P P ++   
Sbjct:  654 KTPYEIWYGTKPRVHHLRIIGTTCYAHIPKPQRTKFQKKARKGILIGYDGDE-GYRIWCQKNLQLIRSRDV-IFNEEPLTTEDI--ATTRRPDPQQLNEF 749          
BLAST of mRNA_D-mesarthrocarpus_Contig10944.1.1 vs. uniprot
Match: A0A6H5FV69_9HEMI (Uncharacterized protein n=2 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5FV69_9HEMI)

HSP 1 Score: 63.9 bits (154), Expect = 1.510e-9
Identity = 29/70 (41.43%), Postives = 47/70 (67.14%), Query Frame = 1
Query:   16 TPFEVWTGRIPKLHHLKVSGATAFVHVET-RKTKLLQRGWEGRFVGHSIDSPAYLVWRPGTTQIFRSRDL 222
            TP E+W+G+ PKL H+++ G  AF HV + R+ KL +R     F+G+S++S AY ++ P   ++F SRD+
Sbjct:  190 TPEEIWSGKKPKLSHIRIFGCKAFAHVPSDRRRKLDKRATVCIFLGYSLESKAYRLYNPANRRVFLSRDV 259          
BLAST of mRNA_D-mesarthrocarpus_Contig10944.1.1 vs. uniprot
Match: E2B0C9_CAMFO (Copia protein (Fragment) n=1 Tax=Camponotus floridanus TaxID=104421 RepID=E2B0C9_CAMFO)

HSP 1 Score: 58.2 bits (139), Expect = 7.590e-9
Identity = 26/58 (44.83%), Postives = 37/58 (63.79%), Query Frame = 1
Query:   13 RTPFEVWTGRIPKLHHLKVSGATAFV-HVETRKTKLLQRGWEGRFVGHSIDSPAYLVW 183
            +TPFE+WT R+P L HL++ G  A++ + + RK K   R   G F+G+S  S AY VW
Sbjct:   34 KTPFEIWTNRVPSLKHLRIFGMKAYILNKDPRKKKFDSRSKTGIFIGYSDKSKAYRVW 91          
BLAST of mRNA_D-mesarthrocarpus_Contig10944.1.1 vs. uniprot
Match: A0A6H5KFB1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFB1_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 8.540e-9
Identity = 33/87 (37.93%), Postives = 48/87 (55.17%), Query Frame = 1
Query:    4 VRRRTPFEVWTGRIPKLHHLK--------VSGATAFVHVETRKTKLLQRGWEGRFVGHSIDSPAYLVWRPGTTQIFRSRDLTIFNEL 240
            +   TP+    G+   L HL+        V G+TA VH+ET K+KL+ R W G  +G+S DS AY V+ P T +I  SR++T    +
Sbjct:  181 LNNETPYYRMFGKQASLRHLRXXXXXXXRVIGSTASVHLETYKSKLVNRAWPGILIGYSPDSRAYRVFNPHTKRIVHSRNVTFIEPM 267          
BLAST of mRNA_D-mesarthrocarpus_Contig10944.1.1 vs. uniprot
Match: A0A8J6HVS3_TENMO (Uncharacterized protein n=1 Tax=Tenebrio molitor TaxID=7067 RepID=A0A8J6HVS3_TENMO)

HSP 1 Score: 59.7 bits (143), Expect = 4.560e-8
Identity = 32/90 (35.56%), Postives = 49/90 (54.44%), Query Frame = 1
Query:   13 RTPFEVWTGRIPKLHHLKVSGATAF-VHVETRKTKLLQRGWEGRFVGHSIDSPAYLVWRPGTTQIFRSRDLTIFNELTFQPQDQIQASTN 279
            RTP+EVWT ++P + H +V GA  F +  E  + K   RG EG F+G++  S AY VW     ++  SRD+    E+  +    ++ S N
Sbjct:  512 RTPYEVWTDKVPDISHFRVFGARVFYLDREPGRGKFDSRGQEGIFLGYADHSKAYRVWSTKGRKVVISRDVKFVEEV--RAHSDVKTSDN 599          
BLAST of mRNA_D-mesarthrocarpus_Contig10944.1.1 vs. uniprot
Match: A0A7I8K9S9_SPIIN (Hypothetical protein n=7 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8K9S9_SPIIN)

HSP 1 Score: 58.2 bits (139), Expect = 1.560e-7
Identity = 32/75 (42.67%), Postives = 46/75 (61.33%), Query Frame = 1
Query:   16 TPFEVWTGRIPKLHHLKVSGATAFVHVETRKTKLLQ-RGWEGRFVGHSIDSPAYLVWRPGTTQIFRSRDLTIFNE 237
            TPFEVW G+ P +HHLKV G  A+V   T   K L+ RG +  F+G+   S AY  + P T ++  +RD+ +F+E
Sbjct:  700 TPFEVWHGKKPAVHHLKVFGCIAYVLNTTPHLKKLEDRGRKMIFIGYEYGSKAYQAYDPTTRRVHVTRDV-VFDE 773          
BLAST of mRNA_D-mesarthrocarpus_Contig10944.1.1 vs. uniprot
Match: A0A7I8JRH0_SPIIN (Hypothetical protein n=1 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8JRH0_SPIIN)

HSP 1 Score: 56.2 bits (134), Expect = 2.910e-7
Identity = 31/75 (41.33%), Postives = 45/75 (60.00%), Query Frame = 1
Query:   16 TPFEVWTGRIPKLHHLKVSGATAFVHVETRKTKLLQ-RGWEGRFVGHSIDSPAYLVWRPGTTQIFRSRDLTIFNE 237
            TPFEVW G+ P +HHLKV G  A+V   T   K L+ RG +  F+G+   S AY  + P   ++  +RD+ +F+E
Sbjct:    2 TPFEVWHGKKPAVHHLKVFGCIAYVLNTTPHLKKLEDRGRKMIFIGYEYGSKAYRAYDPTARRVHVTRDV-VFDE 75          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10944.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KCZ9_9PHAE3.920e-1243.04Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5KY84_9PHAE3.630e-1141.77Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5FUQ5_9HEMI4.250e-1033.00Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5GIQ8_9HEMI4.380e-1033.00Uncharacterized protein (Fragment) n=2 Tax=Nesidio... [more]
A0A6H5FV69_9HEMI1.510e-941.43Uncharacterized protein n=2 Tax=Nesidiocoris tenui... [more]
E2B0C9_CAMFO7.590e-944.83Copia protein (Fragment) n=1 Tax=Camponotus florid... [more]
A0A6H5KFB1_9PHAE8.540e-937.93Integrase catalytic domain-containing protein n=1 ... [more]
A0A8J6HVS3_TENMO4.560e-835.56Uncharacterized protein n=1 Tax=Tenebrio molitor T... [more]
A0A7I8K9S9_SPIIN1.560e-742.67Hypothetical protein n=7 Tax=Spirodela intermedia ... [more]
A0A7I8JRH0_SPIIN2.910e-741.33Hypothetical protein n=1 Tax=Spirodela intermedia ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10944contigD-mesarthrocarpus_Contig10944:499..831 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog7425.NV18930-PA
PFAMsDUF4219,RVT_2,Retrotran_gag_2,gag_pre-integrs,rve,zf-CCHC
Model size333
Max annot lvl33208|Metazoa
Hectar predicted targeting categorymitochondrion
Exons1
Evalue1.5e-11
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3BI7U@33208|Metazoa,3CTS1@33213|Bilateria,41WYJ@6656|Arthropoda,3SH01@50557|Insecta
DescriptionEncoded by
Cds size333
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789224.861885-CDS-D-mesarthrocarpus_Contig10944:498..8311680789224.861885-CDS-D-mesarthrocarpus_Contig10944:498..831Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10944 499..831 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10944.1.1prot_D-mesarthrocarpus_Contig10944.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10944 499..831 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10944.1.1

>prot_D-mesarthrocarpus_Contig10944.1.1 ID=prot_D-mesarthrocarpus_Contig10944.1.1|Name=mRNA_D-mesarthrocarpus_Contig10944.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=111bp
LVRRRTPFEVWTGRIPKLHHLKVSGATAFVHVETRKTKLLQRGWEGRFVG
HSIDSPAYLVWRPGTTQIFRSRDLTIFNELTFQPQDQIQASTNGPPPVEI
GHLGEDGDRHE
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mRNA from alignment at D-mesarthrocarpus_Contig10944:499..831-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10944.1.1 ID=mRNA_D-mesarthrocarpus_Contig10944.1.1|Name=mRNA_D-mesarthrocarpus_Contig10944.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=333bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10944:499..831- (Discosporangium mesarthrocarpum MT17_79)
TTGGTGAGGAGACGAACTCCCTTTGAGGTTTGGACGGGCAGAATTCCCAA ACTCCATCATTTGAAAGTATCCGGAGCAACAGCTTTCGTACATGTGGAAA CACGTAAGACAAAGCTGCTCCAAAGAGGTTGGGAAGGTCGATTCGTCGGT CACAGTATCGACAGTCCGGCTTACTTGGTTTGGAGACCAGGTACAACACA AATTTTTCGGTCTCGAGATCTCACAATTTTCAATGAGTTGACGTTCCAAC CGCAAGATCAGATACAGGCCAGCACAAATGGTCCACCTCCCGTTGAGATT GGTCACCTCGGTGAAGATGGTGATCGACACGAA
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10944:499..831-

>mRNA_D-mesarthrocarpus_Contig10944.1.1 ID=mRNA_D-mesarthrocarpus_Contig10944.1.1|Name=mRNA_D-mesarthrocarpus_Contig10944.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=333bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10944:499..831- (Discosporangium mesarthrocarpum MT17_79)
TTGGTGAGGAGACGAACTCCCTTTGAGGTTTGGACGGGCAGAATTCCCAA
ACTCCATCATTTGAAAGTATCCGGAGCAACAGCTTTCGTACATGTGGAAA
CACGTAAGACAAAGCTGCTCCAAAGAGGTTGGGAAGGTCGATTCGTCGGT
CACAGTATCGACAGTCCGGCTTACTTGGTTTGGAGACCAGGTACAACACA
AATTTTTCGGTCTCGAGATCTCACAATTTTCAATGAGTTGACGTTCCAAC
CGCAAGATCAGATACAGGCCAGCACAAATGGTCCACCTCCCGTTGAGATT
GGTCACCTCGGTGAAGATGGTGATCGACACGAA
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