mRNA_D-mesarthrocarpus_Contig10943.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10943.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10943.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10943.1.1 vs. uniprot
Match: A0A6H5KVS2_9PHAE (MABP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVS2_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 5.950e-10
Identity = 25/44 (56.82%), Postives = 40/44 (90.91%), Query Frame = 1 
Query:   10 ILDVVLLYGSDSVPEGYAKIQRTAGGKKANLNSGVMGQYLYLAV 141
            I+DV++++GSD VP GY+K++R++GG++A+LN+G  GQY+YLAV
Sbjct:  305 IVDVIVVHGSDPVPPGYSKLERSSGGRRADLNTGARGQYVYLAV 348
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BLAST of mRNA_D-mesarthrocarpus_Contig10943.1.1 vs. uniprot
Match: D8LKD9_ECTSI (MABP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKD9_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 6.870e-10
Identity = 29/56 (51.79%), Postives = 45/56 (80.36%), Query Frame = 1 
Query:   10 ILDVVLLYGSDSVPEGYAKIQRTAGGKKANLNSGVMGQYLYLAVR---PLLAMPGG 168
            I+DV++++GSD V  GY+K++R++GGK+A+LN+G  GQY+YLAV+   PL+   GG
Sbjct:  274 IVDVIVVHGSDPVLPGYSKLERSSGGKRADLNTGARGQYVYLAVKRDTPLVDQAGG 329
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BLAST of mRNA_D-mesarthrocarpus_Contig10943.1.1 vs. uniprot
Match: I2CQ92_NANGC (C-myc promoter-binding protein irlb (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CQ92_NANGC)

HSP 1 Score: 58.5 bits (140), Expect = 5.880e-9
Identity = 23/48 (47.92%), Postives = 37/48 (77.08%), Query Frame = 1 
Query:    1 GDPILDVVLLYGSDSVPEGYAKIQRTAGGKKANLNSGVMGQYLYLAVR 144
            G P++++  ++GSD+VPEG+ ++  T  G+KA+LN+G  G Y+YLAVR
Sbjct:   56 GAPLVEIQAVFGSDAVPEGFKRVSNTPCGRKADLNAGAGGHYIYLAVR 103
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BLAST of mRNA_D-mesarthrocarpus_Contig10943.1.1 vs. uniprot
Match: W7U6C9_9STRA (Brefeldin a-inhibited guanine nucleotide-exchange n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7U6C9_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 5.550e-8
Identity = 23/48 (47.92%), Postives = 37/48 (77.08%), Query Frame = 1 
Query:    1 GDPILDVVLLYGSDSVPEGYAKIQRTAGGKKANLNSGVMGQYLYLAVR 144
            G P++++  ++GSD+VPEG+ ++  T  G+KA+LN+G  G Y+YLAVR
Sbjct:  208 GAPLVEIQAVFGSDAVPEGFKRVSNTPCGRKADLNAGAGGHYIYLAVR 255
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BLAST of mRNA_D-mesarthrocarpus_Contig10943.1.1 vs. uniprot
Match: A0A835ZFI0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFI0_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 7.610e-8
Identity = 25/46 (54.35%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:    7 PILDVVLLYGSDSVPEGYAKIQRTAGGKKANLNSGVMGQYLYLAVR 144
            PI+ + L++G+D VPEGY K+  T  G+KA+LN+G  GQYLYL V+
Sbjct:  463 PIVAITLVHGNDPVPEGYDKVGLTIAGRKADLNAGAGGQYLYLCVQ 508
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BLAST of mRNA_D-mesarthrocarpus_Contig10943.1.1 vs. uniprot
Match: A0A7S2RMJ3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RMJ3_9STRA)

HSP 1 Score: 48.5 bits (114), Expect = 3.910e-5
Identity = 20/45 (44.44%), Postives = 33/45 (73.33%), Query Frame = 1 
Query:   10 ILDVVLLYGSDSVPEGYAKIQRTAGGKKANLNSGVMGQYLYLAVR 144
            I D+  ++G++++PEG+ KIQ+T   +KA+LN G  GQ ++L VR
Sbjct:   32 IADITAVFGNETMPEGFFKIQQTVSQRKADLNQGSGGQPIFLCVR 76
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10943.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5KVS2_9PHAE5.950e-1056.82MABP domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LKD9_ECTSI6.870e-1051.79MABP domain-containing protein n=1 Tax=Ectocarpus ... [more]
I2CQ92_NANGC5.880e-947.92C-myc promoter-binding protein irlb (Fragment) n=1... [more]
W7U6C9_9STRA5.550e-847.92Brefeldin a-inhibited guanine nucleotide-exchange ... [more]
A0A835ZFI0_9STRA7.610e-854.35Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2RMJ3_9STRA3.910e-544.44Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10943contigD-mesarthrocarpus_Contig10943:1246..2254 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog42099.EPrPV00000021542
PFAMsPH,Sec7,Sec7_N
Model size272
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.32e-07
EggNOG OGsCOG5307@1|root,KOG1729@1|root,KOG0929@2759|Eukaryota,KOG1729@2759|Eukaryota,1MDUW@121069|Pythiales
DescriptionBrefeldin A-inhibited guanine nucleotide-exchange protein. Source PGD
Cds size213
COG categoryT
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789224.8108633-UTR-D-mesarthrocarpus_Contig10943:1245..13041680789224.8108633-UTR-D-mesarthrocarpus_Contig10943:1245..1304Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig10943 1246..1304 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789224.8217824-CDS-D-mesarthrocarpus_Contig10943:1304..13731680789224.8217824-CDS-D-mesarthrocarpus_Contig10943:1304..1373Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10943 1305..1373 -
1680789224.8321064-CDS-D-mesarthrocarpus_Contig10943:2110..22541680789224.8321064-CDS-D-mesarthrocarpus_Contig10943:2110..2254Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10943 2111..2254 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10943.1.1prot_D-mesarthrocarpus_Contig10943.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10943 1305..2254 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10943.1.1

>prot_D-mesarthrocarpus_Contig10943.1.1 ID=prot_D-mesarthrocarpus_Contig10943.1.1|Name=mRNA_D-mesarthrocarpus_Contig10943.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=71bp
GDPILDVVLLYGSDSVPEGYAKIQRTAGGKKANLNSGVMGQYLYLAVRPL
LAMPGGGSGRGLPPWSWQSQ*
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mRNA from alignment at D-mesarthrocarpus_Contig10943:1246..2254-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10943.1.1 ID=mRNA_D-mesarthrocarpus_Contig10943.1.1|Name=mRNA_D-mesarthrocarpus_Contig10943.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1009bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10943:1246..2254- (Discosporangium mesarthrocarpum MT17_79)
GGGGACCCGATTTTGGATGTGGTTCTGCTCTATGGGTCGGACTCAGTGCC
AGAGGGCTATGCAAAGATCCAGCGCACGGCGGGGGGGAAGAAGGCGAATC
TTAACAGTGGGGTAATGGGGCAATACCTATATCTCGCGGTGAGGGTGGGG
ACCACATAATATAGCAGTAGTAGTAGTAGTTCAGAGTATACTGTTCAGGA
GTAGTAGGGGCAGTATGTATATGGCAGAGCTATGGCCCCTACAAAGATAA
ACCCCATTGGCTTAAGCAATTCCCTACCGGCTGGGTGCCGAAGCTTCAGC
ACCTGTTTCTTTTTTTGTTTGTTTGTTTCTTTTTTTTCTTGGGAGTGTGT
GAAACCAGTTTGAGAATGCTGTCAGCTGGCTCTTGTTTTCCACGTGCGGT
ATACTGCTTGTGCCCTGTAACTGAACTGTAACTGAACTGTAACTGAACTG
TAATTGAACTGCAGTAGTACCATGGGTGTGACCATGCTGTACTCCTGCCA
TATTGTACATGAAGTGTGATTGTACTCTAACTGTTGCCGTGCCGTGCGGA
CATAGTGTAACTGTACAGCGGTTACGAATTTTCCCCCAACTTTTCTCAAG
CGTCCAAGAGACTTCGGAAACAAACGAGCATTCACACAAGGAGAGTGCGG
TATCCTAACCCTAACCCTAACCCCAACCTTCATCCTACGCAGGAGGGTGT
TTCAACCCTGTAACTCTAACCCTAACCTCGTGTACTGTTACCGTATGTGT
ACAACCTACCTGGCCGTACCTGCTGGCCCAGGTGAAGCGGGAGAGCTCAT
CGGGATTTGGGAAGACAGGGGCGGTGGCAGGGGGAGGGGGGGGCTTGAGC
GGGCCAGGTGGGTCAGAAGACTCAATGGCAGCCTCTGTTGGCCATGCCGG
GGGGGGGGTCTGGGCGGGGACTACCCCCGTGGTCGTGGCAATCACAGTGA
TCTTTCCAGACAGGGGGGAGTATGTGCCGCCAATGTTCCAAAAGGTGAGT
AAGAAGGGT
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10943:1246..2254-

>mRNA_D-mesarthrocarpus_Contig10943.1.1 ID=mRNA_D-mesarthrocarpus_Contig10943.1.1|Name=mRNA_D-mesarthrocarpus_Contig10943.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=213bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10943:1246..2254- (Discosporangium mesarthrocarpum MT17_79)
GGGGACCCGATTTTGGATGTGGTTCTGCTCTATGGGTCGGACTCAGTGCC
AGAGGGCTATGCAAAGATCCAGCGCACGGCGGGGGGGAAGAAGGCGAATC
TTAACAGTGGGGTAATGGGGCAATACCTATATCTCGCGGTGAGGCCTCTG
TTGGCCATGCCGGGGGGGGGGTCTGGGCGGGGACTACCCCCGTGGTCGTG
GCAATCACAGTGA
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