mRNA_D-mesarthrocarpus_Contig10934.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10934.2.1
Unique NamemRNA_D-mesarthrocarpus_Contig10934.2.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10934.2.1 vs. uniprot
Match: A0A2P6VHS1_9CHLO (NADPH:adrenodoxin mitochondrial isoform X1 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VHS1_9CHLO)

HSP 1 Score: 77.8 bits (190), Expect = 7.300e-15
Identity = 43/84 (51.19%), Postives = 53/84 (63.10%), Query Frame = 1 
Query:    1 RCRFLLDFAKTMLAPIAGHEGKDAPFSGVLVTSGALGWATAAASTRAFRLGGPGCVVEGRAVAEMVPFLDMANHSYHPNAKVTP 252
            RCR+LL FAK  LAP++G E    PF G  V + ALGWA A  ++RAFR  GP         A M+P +DMANHS+ PNAK+ P
Sbjct:  186 RCRWLLGFAKEALAPVSGGEAD--PFEGADVDANALGWALAVVTSRAFRTRGPD------KPAAMLPLIDMANHSFSPNAKIAP 261
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BLAST of mRNA_D-mesarthrocarpus_Contig10934.2.1 vs. uniprot
Match: A0A835W2J2_CHLIN (Uncharacterized protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835W2J2_CHLIN)

HSP 1 Score: 70.9 bits (172), Expect = 1.620e-12
Identity = 40/84 (47.62%), Postives = 53/84 (63.10%), Query Frame = 1 
Query:    1 RCRFLLDFAKTMLAPIAGHEGKDAPFSGVLVTSGALGWATAAASTRAFRLGGPGCVVEGRAVAEMVPFLDMANHSYHPNAKVTP 252
            RC++L +F+  +LA + G    D PF+GV V   ALGWA AA S+RAFR  GP         A M+P +DMANH++ PNA+V P
Sbjct:   23 RCKWLYEFSTDVLAKLPGSP--DDPFNGVAVDINALGWAMAAVSSRAFRTRGP------TQPAAMLPLIDMANHTFSPNAEVLP 98
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BLAST of mRNA_D-mesarthrocarpus_Contig10934.2.1 vs. uniprot
Match: A0A0D2KNK5_9CHLO (SET domain-containing protein n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2KNK5_9CHLO)

HSP 1 Score: 68.9 bits (167), Expect = 2.880e-12
Identity = 39/84 (46.43%), Postives = 51/84 (60.71%), Query Frame = 1 
Query:    1 RCRFLLDFAKTMLAPIAGHEGKDAPFSGVLVTSGALGWATAAASTRAFRLGGPGCVVEGRAVAEMVPFLDMANHSYHPNAKVTP 252
            RCR+L  F+   LAP+AG      PF GV V   +LGW  AA ++RAFR+ GP         A ++P +DMANHS+ PNA+V P
Sbjct:  122 RCRWLHRFSTDALAPLAGTAAD--PFGGVRVDINSLGWGLAAVTSRAFRVRGPS------QPASLLPLIDMANHSFEPNAEVLP 197
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BLAST of mRNA_D-mesarthrocarpus_Contig10934.2.1 vs. uniprot
Match: A0A8J4FH52_9CHLO (SET domain-containing protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4FH52_9CHLO)

HSP 1 Score: 70.1 bits (170), Expect = 3.590e-12
Identity = 40/84 (47.62%), Postives = 51/84 (60.71%), Query Frame = 1 
Query:    1 RCRFLLDFAKTMLAPIAGHEGKDAPFSGVLVTSGALGWATAAASTRAFRLGGPGCVVEGRAVAEMVPFLDMANHSYHPNAKVTP 252
            RCR+L  F++ +LA + G  G   PF GV V   A+GWA A  S+RAFR  GP         A M+P +DMANHS+ PNA+V P
Sbjct:  195 RCRWLFTFSQQVLAKLPGTPGD--PFGGVTVDINAMGWALACVSSRAFRTRGPSHP------AAMLPLIDMANHSFAPNAEVLP 270
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BLAST of mRNA_D-mesarthrocarpus_Contig10934.2.1 vs. uniprot
Match: A0A2K3D711_CHLRE (SET domain-containing protein n=3 Tax=Chlamydomonas TaxID=3052 RepID=A0A2K3D711_CHLRE)

HSP 1 Score: 68.6 bits (166), Expect = 1.250e-11
Identity = 39/84 (46.43%), Postives = 52/84 (61.90%), Query Frame = 1 
Query:    1 RCRFLLDFAKTMLAPIAGHEGKDAPFSGVLVTSGALGWATAAASTRAFRLGGPGCVVEGRAVAEMVPFLDMANHSYHPNAKVTP 252
            RC++L +F+  +LA + G    + PF GV V   ALGWA AA S+RAFR  GP         A M+P +DMANH++ PNA+V P
Sbjct:  176 RCKWLYEFSTEVLARLPGSP--EDPFGGVAVDINALGWAMAAVSSRAFRTRGP------TQPAAMLPLIDMANHTFSPNAEVLP 251
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BLAST of mRNA_D-mesarthrocarpus_Contig10934.2.1 vs. uniprot
Match: D8T1W6_SELML (SET domain-containing protein n=4 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8T1W6_SELML)

HSP 1 Score: 68.2 bits (165), Expect = 1.680e-11
Identity = 40/82 (48.78%), Postives = 50/82 (60.98%), Query Frame = 1 
Query:    1 RCRFLLDFAKTMLAPIAGHEGKDAPFSGVLVTSGALGWATAAASTRAFRLGGPGCVVEGRAVAEMVPFLDMANHSYHPNAKV 246
            RCRFLL F+   LA +     +  PF+G  V SGALGWA AA S+RAFR+ G   V      A M+P +DM NHS+ PNA +
Sbjct:  157 RCRFLLQFSSE-LAKLESLPEEIHPFAGQFVDSGALGWAMAAVSSRAFRIHG---VTNKLCSAMMLPLIDMCNHSFQPNAHI 234
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BLAST of mRNA_D-mesarthrocarpus_Contig10934.2.1 vs. uniprot
Match: A0A836BPP4_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836BPP4_9CHLO)

HSP 1 Score: 67.8 bits (164), Expect = 2.100e-11
Identity = 38/84 (45.24%), Postives = 50/84 (59.52%), Query Frame = 1 
Query:    1 RCRFLLDFAKTMLAPIAGHEGKDAPFSGVLVTSGALGWATAAASTRAFRLGGPGCVVEGRAVAEMVPFLDMANHSYHPNAKVTP 252
            RC++L +F+  +LAP+ G      PF G  V   ALGWA A  S+RAFR  GP         A ++P +DMANHS+ PNA+V P
Sbjct:   23 RCKWLYEFSTQVLAPLPGSPAD--PFGGARVDINALGWALACVSSRAFRTRGPSHP------AALLPLVDMANHSFDPNAEVLP 98
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BLAST of mRNA_D-mesarthrocarpus_Contig10934.2.1 vs. uniprot
Match: A0A2I0B0X3_9ASPA ([Fructose-bisphosphate aldolase]-lysine N-methyltransferase, chloroplastic n=1 Tax=Apostasia shenzhenica TaxID=1088818 RepID=A0A2I0B0X3_9ASPA)

HSP 1 Score: 67.8 bits (164), Expect = 2.310e-11
Identity = 38/83 (45.78%), Postives = 51/83 (61.45%), Query Frame = 1 
Query:    1 RCRFLLDFAKTMLAPIAGHEGKDAPFSGVLVTSGALGWATAAASTRAFRLGGPGCVVEGRA-VAEMVPFLDMANHSYHPNAKV 246
            RCRFLLDF KT+ A +   E K  PFSG  V + +LGWA +A S+RAFRL         R  +  ++P +D  NHS+ P+AK+
Sbjct:  174 RCRFLLDFEKTVGALLENVEQKSHPFSGQDVNASSLGWAMSAVSSRAFRLHSESLSDGQRTNIPMLLPLIDSCNHSFQPHAKI 256
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BLAST of mRNA_D-mesarthrocarpus_Contig10934.2.1 vs. uniprot
Match: A0A7J7CV42_TRIWF (Rubisco methyltransferase family protein isoform 3 n=1 Tax=Tripterygium wilfordii TaxID=458696 RepID=A0A7J7CV42_TRIWF)

HSP 1 Score: 67.0 bits (162), Expect = 4.310e-11
Identity = 37/86 (43.02%), Postives = 54/86 (62.79%), Query Frame = 1 
Query:    1 RCRFLLDFAKTMLAPIAGHEGKDAPFSGVLVTSGALGWATAAASTRAFRLGGP----GCVVEGRAVAEMVPFLDMANHSYHPNAKV 246
            RCRFLL+F K++   +   + KD PF G  + + +LGWA  A S+RAFRL G     G  ++   V  M+P +DM NHS++PNA++
Sbjct:  169 RCRFLLNFEKSVKHVLENLKPKDHPFGGQDIDASSLGWAMTAVSSRAFRLHGEKLPNGIRID---VPMMLPLIDMCNHSFNPNARI 251
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BLAST of mRNA_D-mesarthrocarpus_Contig10934.2.1 vs. uniprot
Match: A0A250XU00_9CHLO (SET domain-containing protein n=2 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XU00_9CHLO)

HSP 1 Score: 66.2 bits (160), Expect = 8.140e-11
Identity = 36/82 (43.90%), Postives = 52/82 (63.41%), Query Frame = 1 
Query:    1 RCRFLLDFAKTMLAPIAGHEGKDAPFSGVLVTSGALGWATAAASTRAFRLGGPGCVVEGRAVAEMVPFLDMANHSYHPNAKV 246
            RC++L +F++ +L  + G E  + PF+GV V   ALGWA A  ++RAFR  GP      +  A  +P +DMANHS+ PNA+V
Sbjct:  187 RCKWLFEFSQNVLGKLPGTE--EDPFAGVSVDINALGWAMACVTSRAFRTKGP------QHPASCLPLIDMANHSFEPNAEV 260
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10934.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A2P6VHS1_9CHLO7.300e-1551.19NADPH:adrenodoxin mitochondrial isoform X1 n=1 Tax... [more]
A0A835W2J2_CHLIN1.620e-1247.62Uncharacterized protein n=1 Tax=Chlamydomonas ince... [more]
A0A0D2KNK5_9CHLO2.880e-1246.43SET domain-containing protein n=1 Tax=Monoraphidiu... [more]
A0A8J4FH52_9CHLO3.590e-1247.62SET domain-containing protein n=1 Tax=Volvox retic... [more]
A0A2K3D711_CHLRE1.250e-1146.43SET domain-containing protein n=3 Tax=Chlamydomona... [more]
D8T1W6_SELML1.680e-1148.78SET domain-containing protein n=4 Tax=Selaginella ... [more]
A0A836BPP4_9CHLO2.100e-1145.24Uncharacterized protein n=1 Tax=Edaphochlamys deba... [more]
A0A2I0B0X3_9ASPA2.310e-1145.78[Fructose-bisphosphate aldolase]-lysine N-methyltr... [more]
A0A7J7CV42_TRIWF4.310e-1143.02Rubisco methyltransferase family protein isoform 3... [more]
A0A250XU00_9CHLO8.140e-1143.90SET domain-containing protein n=2 Tax=Chlamydomona... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10934contigD-mesarthrocarpus_Contig10934:3383..3634 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog3712.Bo5g043680.1
PFAMsRubis-subs-bind,SET
Model size252
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003712,GO:0003713,GO:0003824,GO:0006325,GO:0006355,GO:0006464,GO:0006479,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008757,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010452,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016043,GO:0016278,GO:0016279,GO:0016569,GO:0016570,GO:0016571,GO:0016740,GO:0016741,GO:0018022,GO:0018023,GO:0018024,GO:0018026,GO:0018027,GO:0018193,GO:0018205,GO:0019219,GO:0019222,GO:0019538,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032259,GO:0034968,GO:0036211,GO:0042054,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0045893,GO:0045935,GO:0046975,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051276,GO:0060255,GO:0065007,GO:0071704,GO:0071840,GO:0080090,GO:0140096,GO:0140110,GO:1901564,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141
Exons1
Evalue1.66e-13
EggNOG OGsKOG1337@1|root,KOG1337@2759|Eukaryota,37MUQ@33090|Viridiplantae,3GDYY@35493|Streptophyta,3HNYY@3699|Brassicales
DescriptionRubisco LSMT substrate-binding
Cds size252
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789224.1457915-CDS-D-mesarthrocarpus_Contig10934:3382..36341680789224.1457915-CDS-D-mesarthrocarpus_Contig10934:3382..3634Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10934 3383..3634 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10934.2.1prot_D-mesarthrocarpus_Contig10934.2.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10934 3383..3634 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10934.2.1

>prot_D-mesarthrocarpus_Contig10934.2.1 ID=prot_D-mesarthrocarpus_Contig10934.2.1|Name=mRNA_D-mesarthrocarpus_Contig10934.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=84bp
RCRFLLDFAKTMLAPIAGHEGKDAPFSGVLVTSGALGWATAAASTRAFRL
GGPGCVVEGRAVAEMVPFLDMANHSYHPNAKVTP
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mRNA from alignment at D-mesarthrocarpus_Contig10934:3383..3634+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10934.2.1 ID=mRNA_D-mesarthrocarpus_Contig10934.2.1|Name=mRNA_D-mesarthrocarpus_Contig10934.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=252bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10934:3383..3634+ (Discosporangium mesarthrocarpum MT17_79)
AGGTGCCGGTTCCTCTTGGACTTTGCCAAGACGATGCTGGCGCCGATTGC
CGGTCACGAGGGAAAAGACGCCCCCTTCTCAGGAGTGCTTGTCACCTCGG
GGGCCTTGGGGTGGGCTACGGCCGCTGCCAGCACCAGGGCATTCCGGCTG
GGGGGGCCTGGGTGCGTGGTTGAAGGGCGAGCGGTGGCGGAGATGGTTCC
CTTCTTGGACATGGCAAATCACTCATATCATCCGAATGCAAAGGTGACAC
CT
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10934:3383..3634+

>mRNA_D-mesarthrocarpus_Contig10934.2.1 ID=mRNA_D-mesarthrocarpus_Contig10934.2.1|Name=mRNA_D-mesarthrocarpus_Contig10934.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=252bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10934:3383..3634+ (Discosporangium mesarthrocarpum MT17_79)
AGGTGCCGGTTCCTCTTGGACTTTGCCAAGACGATGCTGGCGCCGATTGC
CGGTCACGAGGGAAAAGACGCCCCCTTCTCAGGAGTGCTTGTCACCTCGG
GGGCCTTGGGGTGGGCTACGGCCGCTGCCAGCACCAGGGCATTCCGGCTG
GGGGGGCCTGGGTGCGTGGTTGAAGGGCGAGCGGTGGCGGAGATGGTTCC
CTTCTTGGACATGGCAAATCACTCATATCATCCGAATGCAAAGGTGACAC
CT
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