mRNA_D-mesarthrocarpus_Contig1093.6.1 (mRNA) Discosporangium mesarthrocarpum MT17_79
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Overview
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig1093.6.1 vs. uniprot
Match: A0A6H5KZV5_9PHAE (ER membrane protein complex subunit 6 n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KZV5_9PHAE) HSP 1 Score: 133 bits (334), Expect = 2.340e-34 Identity = 68/104 (65.38%), Postives = 81/104 (77.88%), Query Frame = 1
Query: 1 RQFYSMENVMHNNKVLDYSRTSLSAVGGMVSGILGLTGIEGLVTFPLIYAVVSLGLMLKM-PHGVSHYTMGKGGAPMFLLGGIGKYALTYILFWTLAYSLVCVY 309
RQFYS EN+ HN KVL+Y RTSL AVGG+VSGILGLTG+ GL ++ ++Y VVSL L++KM VS YT GKG MF GG+G YALTYILFWTLAY+LV +Y
Sbjct: 24 RQFYSSENIAHNKKVLEYCRTSLCAVGGIVSGILGLTGLVGLFSYLILYLVVSLSLVVKMGTTDVSLYTAGKGKLAMFAFGGVGNYALTYILFWTLAYTLVYIY 127
BLAST of mRNA_D-mesarthrocarpus_Contig1093.6.1 vs. uniprot
Match: A0A835YLI1_9STRA (ER membrane protein complex subunit 6 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLI1_9STRA) HSP 1 Score: 92.8 bits (229), Expect = 2.590e-19 Identity = 51/103 (49.51%), Postives = 67/103 (65.05%), Query Frame = 1
Query: 7 FYSMENVMHNNKVLDYSRTSLSAVGGMVSGILGLTGIEGLVTFPLIYAVVSLGLMLKMPHGVSHYTMGK--GGAPMFLLGGIGKYALTYILFWTLAYSLVCVY 309
F + +N+MHN K++ RTSL AV G+ +GILG TG GL+ + + YA VSL L+ KM S YT K G FLL G+ ++T+ILFWTLAY+LV VY
Sbjct: 18 FLNAQNLMHNMKIITACRTSLCAVAGIATGILGCTGSMGLILYLITYATVSLALLAKMGFDRSDYTAAKKDSGIAGFLLEGLFGLSITFILFWTLAYALVYVY 120
BLAST of mRNA_D-mesarthrocarpus_Contig1093.6.1 vs. uniprot
Match: F0YEP0_AURAN (ER membrane protein complex subunit 6 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YEP0_AURAN) HSP 1 Score: 77.8 bits (190), Expect = 4.080e-14 Identity = 39/97 (40.21%), Postives = 59/97 (60.82%), Query Frame = 1
Query: 19 ENVMHNNKVLDYSRTSLSAVGGMVSGILGLTGIEGLVTFPLIYAVVSLGLMLKMPHGVSHYTMGKGGAPMFLLGGIGKYALTYILFWTLAYSLVCVY 309
E +MHN +D R+ L+ G+ +GILGLT + G + F Y +SL L++ M YT P ++GG+GKY L+++LFWTL+Y+LV +Y
Sbjct: 5 EAMMHNMSAIDGCRSYLTIFAGVGAGILGLTSVRGALGFMASYVAISLALLVAMKGDSMAYT--NEAIPNHVIGGVGKYGLSFVLFWTLSYALVHIY 99
BLAST of mRNA_D-mesarthrocarpus_Contig1093.6.1 vs. uniprot
Match: A0A2K1IUJ4_PHYPA (ER membrane protein complex subunit 6 n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1IUJ4_PHYPA) HSP 1 Score: 78.2 bits (191), Expect = 6.380e-14 Identity = 43/100 (43.00%), Postives = 61/100 (61.00%), Query Frame = 1
Query: 10 YSMENVMHNNKVLDYSRTSLSAVGGMVSGILGLTGIEGLVTFPLIYAVVSLGLMLKMPHGVSHYTMGKGGAPMFLLGGIGKYALTYILFWTLAYSLVCVY 309
YS ENV N +++ YSRT LS VGG+++G+LGLTGI G + + LI + S+G+ K V Y L GIG+ L++ILFWT AY +V ++
Sbjct: 32 YSQENVQLNMRMIYYSRTFLSIVGGVIAGVLGLTGISGFLCYFLIMMLASVGVAAKAKFDVHSYFDSWN---RILFDGIGQGLLSFILFWTFAYDIVHIF 128
BLAST of mRNA_D-mesarthrocarpus_Contig1093.6.1 vs. uniprot
Match: UPI00201A9E9C (LOW QUALITY PROTEIN: ER membrane protein complex subunit 6 n=2 Tax=Ricinus communis TaxID=3988 RepID=UPI00201A9E9C) HSP 1 Score: 77.4 bits (189), Expect = 9.790e-14 Identity = 40/102 (39.22%), Postives = 60/102 (58.82%), Query Frame = 1
Query: 4 QFYSMENVMHNNKVLDYSRTSLSAVGGMVSGILGLTGIEGLVTFPLIYAVVSLGLMLKMPHGVSHYTMGKGGAPMFLLGGIGKYALTYILFWTLAYSLVCVY 309
Q +S EN+ N KV+ YS T LS +GG+++GILG TG+ G + + L+ A S+GL+ K V Y G +L G L+++LFWT AY +V ++
Sbjct: 22 QTFSAENLQSNMKVIYYSXTFLSIIGGVIAGILGFTGLNGFIFYFLVMATTSIGLLAKAKFSVHSYF---GSWNQIILDGFFSGLLSFVLFWTFAYDIVHIF 120
BLAST of mRNA_D-mesarthrocarpus_Contig1093.6.1 vs. uniprot
Match: UPI000527ED2A (ER membrane protein complex subunit 6 n=2 Tax=Myrtoideae TaxID=1699513 RepID=UPI000527ED2A) HSP 1 Score: 77.0 bits (188), Expect = 1.310e-13 Identity = 40/100 (40.00%), Postives = 66/100 (66.00%), Query Frame = 1
Query: 10 YSMENVMHNNKVLDYSRTSLSAVGGMVSGILGLTGIEGLVTFPLIYAVVSLGLMLKMPHGVSHYTMGKGGAPMFLLGGIGKYALTYILFWTLAYSLVCVY 309
+S EN+ N KV+ YSRT +S +GG+++GILG TG+ G V + L+ A+ S+GL+ K G S ++ G + + L G +G ++++LFWT AY +V ++
Sbjct: 23 FSAENMQSNMKVIYYSRTFMSIIGGVIAGILGFTGLTGFVIYFLVMAITSIGLIAKT--GFSIHSYFTGWSQIILDGFLGG-LMSFVLFWTFAYDIVHIF 119
BLAST of mRNA_D-mesarthrocarpus_Contig1093.6.1 vs. uniprot
Match: UPI0005D370DB (ER membrane protein complex subunit 6 n=1 Tax=Amborella trichopoda TaxID=13333 RepID=UPI0005D370DB) HSP 1 Score: 77.0 bits (188), Expect = 1.380e-13 Identity = 42/101 (41.58%), Postives = 64/101 (63.37%), Query Frame = 1
Query: 10 YSMENVMHNNKVLDYSRTSLSAVGGMVSGILGLTGIEGLVTFPLIYAVVSLGLMLKMPHGVSHYTMGKGGAPM-FLLGGIGKYALTYILFWTLAYSLVCVY 309
+S EN+ N KV+ YSRT LS +GG+++GILGLTG++G V + LI A+ SLGL K + Y + +LGG+ ++++LFWT AY +V ++
Sbjct: 25 FSAENLQSNMKVIYYSRTFLSIIGGVIAGILGLTGLKGFVLYFLIMALASLGLAAKARFSIHEYFDSWNRVVLDAVLGGL----MSFVLFWTFAYDIVHIF 121
BLAST of mRNA_D-mesarthrocarpus_Contig1093.6.1 vs. uniprot
Match: A0A0K9RLR8_SPIOL (ER membrane protein complex subunit 6 n=1 Tax=Spinacia oleracea TaxID=3562 RepID=A0A0K9RLR8_SPIOL) HSP 1 Score: 76.6 bits (187), Expect = 1.660e-13 Identity = 39/101 (38.61%), Postives = 62/101 (61.39%), Query Frame = 1
Query: 7 FYSMENVMHNNKVLDYSRTSLSAVGGMVSGILGLTGIEGLVTFPLIYAVVSLGLMLKMPHGVSHYTMGKGGAPMFLLGGIGKYALTYILFWTLAYSLVCVY 309
F + EN+ +N KV++YSRT +S VGG+++GILG TG+ G + + ++ AV S+GL K + Y G LL G ++++LFWT AY +V ++
Sbjct: 19 FINAENMQNNMKVINYSRTLMSIVGGIIAGILGFTGLTGFIFYFVVMAVTSVGLAAKAKFSIHSYFEGWNRV---LLDGFLAGLMSFVLFWTFAYDIVHIF 116
BLAST of mRNA_D-mesarthrocarpus_Contig1093.6.1 vs. uniprot
Match: A9P1K8_PICSI (ER membrane protein complex subunit 6 n=1 Tax=Picea sitchensis TaxID=3332 RepID=A9P1K8_PICSI) HSP 1 Score: 76.6 bits (187), Expect = 1.940e-13 Identity = 41/100 (41.00%), Postives = 63/100 (63.00%), Query Frame = 1
Query: 10 YSMENVMHNNKVLDYSRTSLSAVGGMVSGILGLTGIEGLVTFPLIYAVVSLGLMLKMPHGVSHYTMGKGGAPMFLLGGIGKYALTYILFWTLAYSLVCVY 309
+S EN+ +N KV YSRT LS +GG+V+GILGLTG++G + + +I AV SLG++ K + Y +L GI ++++LFWT AY +V ++
Sbjct: 26 FSAENLQNNMKVTFYSRTFLSIIGGVVAGILGLTGLKGFILYFIIMAVGSLGVITKAKFDIHEYFDSWNRV---ILDGITGGLMSFVLFWTFAYDIVHIF 122
BLAST of mRNA_D-mesarthrocarpus_Contig1093.6.1 vs. uniprot
Match: A0A1U8ASA6_NELNU (ER membrane protein complex subunit 6 n=2 Tax=Nelumbo nucifera TaxID=4432 RepID=A0A1U8ASA6_NELNU) HSP 1 Score: 75.1 bits (183), Expect = 6.550e-13 Identity = 41/100 (41.00%), Postives = 60/100 (60.00%), Query Frame = 1
Query: 10 YSMENVMHNNKVLDYSRTSLSAVGGMVSGILGLTGIEGLVTFPLIYAVVSLGLMLKMPHGVSHYTMGKGGAPMFLLGGIGKYALTYILFWTLAYSLVCVY 309
++ EN+ +N K++ YSRT LS +GG+++GILG TG+ G V + LI A+ SLGL K + Y LL G L+Y+LFWT AY +V ++
Sbjct: 24 FNAENLQNNMKIIYYSRTFLSIIGGVIAGILGYTGLTGFVFYFLIMAITSLGLAAKAKFSIHSYFDCWN---RLLLDGFLGGLLSYVLFWTFAYDIVHIF 120 The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig1093.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-mesarthrocarpus_Contig1093.6.1 >prot_D-mesarthrocarpus_Contig1093.6.1 ID=prot_D-mesarthrocarpus_Contig1093.6.1|Name=mRNA_D-mesarthrocarpus_Contig1093.6.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=99bp MENVMHNNKVLDYSRTSLSAVGGMVSGILGLTGIEGLVTFPLIYAVVSLGback to top mRNA from alignment at D-mesarthrocarpus_Contig1093:10068..14113- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-mesarthrocarpus_Contig1093.6.1 ID=mRNA_D-mesarthrocarpus_Contig1093.6.1|Name=mRNA_D-mesarthrocarpus_Contig1093.6.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=4046bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1093:10068..14113- (Discosporangium mesarthrocarpum MT17_79)back to top Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig1093:10068..14113- >mRNA_D-mesarthrocarpus_Contig1093.6.1 ID=mRNA_D-mesarthrocarpus_Contig1093.6.1|Name=mRNA_D-mesarthrocarpus_Contig1093.6.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=297bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1093:10068..14113- (Discosporangium mesarthrocarpum MT17_79)back to top |