mRNA_D-mesarthrocarpus_Contig10911.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10911.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10911.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10911.1.1 vs. uniprot
Match: A0A836CIZ8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIZ8_9STRA)

HSP 1 Score: 116 bits (291), Expect = 7.410e-30
Identity = 54/91 (59.34%), Postives = 69/91 (75.82%), Query Frame = 1 
Query:    7 FDRSHAVGRLEHDMKADLAVLAQKFGTMIESVEDIEEVRISDIDGDHMSLEVVYCDRGEQTCVAVAVPIVFPYHCDTEECLVDVIHELEEM 279
            FD S  +  LE DMK DLA+L+ KFG  I S+EDIE++ +  IDGD MS++VVYC++ + TCVAV VPI FP+HCDTE+ + D IHELEEM
Sbjct:   52 FDESRVIEHLEKDMKGDLALLSFKFGKFISSIEDIEDIHVGRIDGDFMSIDVVYCNKDDDTCVAVEVPIQFPHHCDTEQEIDDAIHELEEM 142
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BLAST of mRNA_D-mesarthrocarpus_Contig10911.1.1 vs. uniprot
Match: A0A6H5JQW8_9PHAE (DUF2470 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JQW8_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 8.480e-29
Identity = 47/94 (50.00%), Postives = 73/94 (77.66%), Query Frame = 1 
Query:    4 NFDRSHAVGRLEHDMKADLAVLAQKFGTMIESVEDIEEVRISDIDGDHMSLEVVYCDRGEQTCVAVAVPIVFPYHCDTEECLVDVIHELEEMKG 285
            +FD+      L+H+ + +L  +AQK+ ++IESVE ++ + I ++DGDHM L+VVYCD+GE+TCVAVAVP++FPYHC+  +C++ VIHELE+ + 
Sbjct:  111 SFDKEQITDVLQHEYRHNLVRVAQKYDSLIESVEGVDAITIKELDGDHMQLDVVYCDQGERTCVAVAVPVIFPYHCNDADCVIGVIHELEQAEN 204
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10911.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A836CIZ8_9STRA7.410e-3059.34Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5JQW8_9PHAE8.480e-2950.00DUF2470 domain-containing protein n=2 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10911contigD-mesarthrocarpus_Contig10911:146..1636 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2850.Phatr45763
Model size291
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.89e-05
EggNOG OGs2EQQ7@1|root,2STP2@2759|Eukaryota,2XH28@2836|Bacillariophyta
Ec32 ortholog descriptionDomain of unknown function DUF2470
Ec32 orthologEc-01_011130.1
Cds size291
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789222.2100904-CDS-D-mesarthrocarpus_Contig10911:145..1981680789222.2100904-CDS-D-mesarthrocarpus_Contig10911:145..198Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10911 146..198 -
1680789222.221538-CDS-D-mesarthrocarpus_Contig10911:848..9461680789222.221538-CDS-D-mesarthrocarpus_Contig10911:848..946Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10911 849..946 -
1680789222.2362378-CDS-D-mesarthrocarpus_Contig10911:1496..16361680789222.2362378-CDS-D-mesarthrocarpus_Contig10911:1496..1636Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10911 1497..1636 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10911.1.1prot_D-mesarthrocarpus_Contig10911.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10911 146..1636 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10911.1.1

>prot_D-mesarthrocarpus_Contig10911.1.1 ID=prot_D-mesarthrocarpus_Contig10911.1.1|Name=mRNA_D-mesarthrocarpus_Contig10911.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=97bp
MNFDRSHAVGRLEHDMKADLAVLAQKFGTMIESVEDIEEVRISDIDGDHM
SLEVVYCDRGEQTCVAVAVPIVFPYHCDTEECLVDVIHELEEMKGDE
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mRNA from alignment at D-mesarthrocarpus_Contig10911:146..1636-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10911.1.1 ID=mRNA_D-mesarthrocarpus_Contig10911.1.1|Name=mRNA_D-mesarthrocarpus_Contig10911.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1491bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10911:146..1636- (Discosporangium mesarthrocarpum MT17_79)
ATGAACTTCGATAGGAGCCACGCCGTGGGTCGCCTCGAGCACGACATGAA
GGCAGACCTCGCCGTGCTTGCCCAGAAATTCGGAACGATGATTGAATCCG
TGGAAGACATCGAGGAAGTTCGTATATCGGATATCGATGGGTGAGTCGAT
CCTTCTTCCAAACCCGGCTTCTTCTCCAGCGCTGTGCTTTTTGGAGCTCT
GGTCTCCGTTAGAAGAGAGAGAGCTTGCAGCACACGCAATGGAGACGAAC
CCAGAGAAGAAAAACGTGCAACACTCAAACGTGAAAGTCCTAATTCAACT
CTAGATCATGCTTGCAATGTCATTGCCCTTGGATTACCTGGAGATCCTTC
TGGCCGACTGTGCAAGTGCGTGGTTGTGGTTTGGCTTGCCCTGGAGACCC
CGAGAGGACCACCAGCGATTTCAGATATGGGGTACTGCCAGCTGGACGTG
CAGGAGAAGCCAAGGAGAAGGATGGCGCATATTTTTTATAACGTGGTGCC
TTACCCAGGATGCGATATAACTGCATCCCTTTTCCTAGAGCCTGACTTGA
TGAATGCCACAGCACTGTGGCTAGCAATGTTTAGAGTTACTTCAAAGGCC
TTCATAGGCCAGGGAATGGTGACCGGCAAGATGCAATCTTGACATCACCT
TTCCCCCTACCTACTCCTTCCACTCGATCTTTTCCTTCAGGGACCATATG
TCGCTCGAGGTGGTGTATTGTGACAGGGGGGAGCAAACTTGCGTTGCTGT
GGCCGTGCCCATCGTTTTCCCGTACCACTGCGACACAGGTGAGCTGACTA
TACACCCCATCAAAATGCAAAACAATGAAATTGACGAGTCATGCATCGTG
TGCCACCCACCCCGCTCCCATGGCATTGGCCACTATTTCTCCCTTCTTGC
AGTGACTGAGGCCAGTCTGTGTCCGCACTGTGATGATTGATGTGATATTG
ATGACACCTCACAGGAATCGAAGAGTGACCTCCTCAGCACTTGAGCACAC
CTCTGCCTTCCTCTCATTGCTTCTCTAGCGGGTGGTGTTATCGATTTATG
GTTTTTGTTGTCACTGAAGAAAGTATCGGTGCTGACATGCCTGTACAGCC
GCCTGCCTGGCTTGTCTTTGTTCCTTGTACACTGTTTCCTGATCATCCCT
TGGGCTTGTTGGAGTGCATATGAAACGAACTCACGTTTTGCCATTTGAAG
TCTCAAAGCGCACTGAATTCCAACCCCCACATCCCAAGGAGTCCTGACCT
CCTCAAGAATAACTGCATGAGGTTCTTCTGTGGGTTTGGGTTAGGGATTG
CTGGTGGGTATTGCAGCCCTTTATTTTGAGATCCTTGGTGCATACTCTCA
TGAATGCCTGCCACCAGACCACCCCATCTCACCCCTCGGCTGACTCTTCA
TCCCTGTTTGTCGCCCCTCACCAACAAAAATCACAAAGAGGAGTGCCTTG
TTGATGTGATCCATGAGCTGGAGGAGATGAAGGGCGACGAA
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10911:146..1636-

>mRNA_D-mesarthrocarpus_Contig10911.1.1 ID=mRNA_D-mesarthrocarpus_Contig10911.1.1|Name=mRNA_D-mesarthrocarpus_Contig10911.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=291bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10911:146..1636- (Discosporangium mesarthrocarpum MT17_79)
ATGAACTTCGATAGGAGCCACGCCGTGGGTCGCCTCGAGCACGACATGAA
GGCAGACCTCGCCGTGCTTGCCCAGAAATTCGGAACGATGATTGAATCCG
TGGAAGACATCGAGGAAGTTCGTATATCGGATATCGATGGGGACCATATG
TCGCTCGAGGTGGTGTATTGTGACAGGGGGGAGCAAACTTGCGTTGCTGT
GGCCGTGCCCATCGTTTTCCCGTACCACTGCGACACAGAGGAGTGCCTTG
TTGATGTGATCCATGAGCTGGAGGAGATGAAGGGCGACGAA
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