mRNA_D-mesarthrocarpus_Contig10908.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10908.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10908.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig10908.1.1 vs. uniprot
Match: A0A6H5JBE2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE2_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 2.930e-20
Identity = 57/144 (39.58%), Postives = 82/144 (56.94%), Query Frame = 1
Query:   94 WMKMLREESLGDPESRGAILFRRRFRVPYPFFVPLVREVRQQSWLGSSGADAAGRQASPWGRRCYRSFTS-SEEKLLDDMFFMARMSEGTA*RVLHKFCECFS*HMFETWIGL-LKSN*ELQRTMEAYHRLGFTGAVGSTDVTY 519
            W ++L +E L DP S  A  FR  FRVPYPFF+ LV  V+++ W  ++  DA GR+  P   +     T      +   ++ ++ MS  T  +V H+FCE F+  M++  I L  + N EL R M  Y +LGF GA+GSTDVT+
Sbjct:   65 WAQVLEDEDLKDPTSIAAKKFREDFRVPYPFFLRLVELVKKKDWFATTQRDAYGRRCHPVEHKVLACLTILGRGNVFGSIYNLSWMSTPTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTH 208          
BLAST of mRNA_D-mesarthrocarpus_Contig10908.1.1 vs. uniprot
Match: A0A6H5L642_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L642_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 4.100e-19
Identity = 55/144 (38.19%), Postives = 80/144 (55.56%), Query Frame = 1
Query:   94 WMKMLREESLGDPESRGAILFRRRFRVPYPFFVPLVREVRQQSWLGSSGADAAGRQASPWGRRCYRSFTS-SEEKLLDDMFFMARMSEGTA*RVLHKFCECFS*HMFETWIGL-LKSN*ELQRTMEAYHRLGFTGAVGSTDVTY 519
            W +ML ++ L D  SR +  FR  FRVPY FF+ LV  V+ ++W  ++G D AGR + P   +     T          ++ M+ MS  T   + HKFC+ F+  M++  I L  + N EL   M+ Y RLGF+GA+GS DVT+
Sbjct:   63 WAQMLEDKDLEDSNSRTSKQFRLDFRVPYSFFLRLVALVKSKNWFVTAGCDGAGRHSHPVEHKVLAWLTILGRGNCFASIYQMSWMSAATVQAMFHKFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTH 206          
BLAST of mRNA_D-mesarthrocarpus_Contig10908.1.1 vs. uniprot
Match: A0A6H5JPH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH7_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 1.220e-17
Identity = 55/145 (37.93%), Postives = 81/145 (55.86%), Query Frame = 1
Query:   94 WMKM--LREESLGDPESRGAILFRRRFRVPYPFFVPLVREVRQQSWLGSSGADAAGRQASPWGRRCYRSFTS-SEEKLLDDMFFMARMSEGTA*RVLHKFCECFS*HMFETWIGLLKSN*ELQRTMEAYHRLGFTGAVGSTDVTY 519
            W ++  LRE    D  +R A  FR  FRVPYPFFV LV  VR + W  +  +D  GRQA P   +        S   +  D++ M+ +S  T     H+FC+ F+  +++ ++  L +  +L++ ME Y R+GF GAVGSTDVT+
Sbjct:  110 WQELMELRETGETDHTTREARRFRNNFRVPYPFFVHLVELVRDRDWFPTGESDVTGRQAVPVELKVLACLQILSRGNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEYV-YLPTGEDLRKVMEQYDRIGFPGAVGSTDVTH 253          
BLAST of mRNA_D-mesarthrocarpus_Contig10908.1.1 vs. uniprot
Match: A0A6H5K8I3_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8I3_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 1.840e-17
Identity = 67/206 (32.52%), Postives = 97/206 (47.09%), Query Frame = 1
Query:   79 FRESPWMKMLRE-ESLGDPESRGAILFRRRFRVPYPFFVPLVREVRQQSWLG--SSGADAAGRQASPWGRRCYRSFTS--------SEEKLLDDMFFMARMSEGTA*RVLHKFCECFS*HMFETWIGLLKSN*ELQRTMEAYHRLGFTGAVGSTDVTYFELE*VSSG*H*VVQRQGRLPHSGMRGHRR-PFHACLGGNMRVSGRTQ 660
            +R  PW +ML + + L DP +R A  FRRRFRVPYPFF+ LV EV+  +W G  +   +  GR      RRC    T               DD+  +  M E T   + HKF E F+  +F  W+ +   + EL+  M+ Y  +G +GA+GS D T+ E          +     R  H G  G+    F+  +  +MRV   T+
Sbjct:   61 YRTLPWARMLEKADLLQDPSTREAKQFRRRFRVPYPFFLSLVDEVKAGNWPGFTTDEFELGGRGT----RRCIPVETKVLAVLRILGRGNYFDDVSEVTGMGEATVNHMFHKFTERFACEIFPVWVRMPNED-ELKDIMKTYDEVGMSGAMGSMDGTHIEWT--------LCPYSQRSSHIGKEGYATLVFNVAVSHDMRVLSCTR 253          
BLAST of mRNA_D-mesarthrocarpus_Contig10908.1.1 vs. uniprot
Match: D7FPI7_ECTSI (Transposon protein, putative, Pong sub-class n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPI7_ECTSI)

HSP 1 Score: 92.4 bits (228), Expect = 2.530e-17
Identity = 54/144 (37.50%), Postives = 80/144 (55.56%), Query Frame = 1
Query:   94 WMKMLREESLGDPESRGAILFRRRFRVPYPFFVPLVREVRQQSWLGSSGADAAGRQASPWGRRCYRSFTS-SEEKLLDDMFFMARMSEGTA*RVLHKFCECFS*HMFETWIGL-LKSN*ELQRTMEAYHRLGFTGAVGSTDVTY 519
            W +ML ++ L +  SR +  FR  FRVP  FF+ LV  V+ ++W  ++G DAAGRQ+ P   +     T          ++ M+ MS  T   + H FC+ F+  M++  I L  + N EL   M+ Y RLGF+GA+GS DVT+
Sbjct:   63 WARMLEDKDLEESNSRTSKQFRLDFRVPCAFFLRLVALVKSKNWFATAGCDAAGRQSHPVEHKVLAWLTILGRGNCFASIYQMSWMSAATVQAMFHMFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTH 206          
BLAST of mRNA_D-mesarthrocarpus_Contig10908.1.1 vs. uniprot
Match: A0A6H5JRQ7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRQ7_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 2.930e-17
Identity = 58/160 (36.25%), Postives = 81/160 (50.62%), Query Frame = 1
Query:   79 FRESPWMKMLRE-ESLGDPESRGAILFRRRFRVPYPFFVPLVREVRQQSWLG--SSGADAAGRQASPWGRRCYRSFTS--------SEEKLLDDMFFMARMSEGTA*RVLHKFCECFS*HMFETWIGLLKSN*ELQRTMEAYHRLGFTGAVGSTDVTYFE 525
            +R  PW +ML + + L DP +R A  FRRRFRVPYPFF+ LV EV+  +W G  +   +  GR      RRC    T               DD+  +  M E T   + HKF E F+   F  W+ +   + EL+  M+ Y  +G +GA+GS D T+ E
Sbjct:   61 YRTLPWARMLEKADLLQDPSTREAKQFRRRFRVPYPFFLSLVDEVKAGNWPGFTTDEFELGGRGT----RRCIPVETKVLAVLRILGRGNYFDDVSEVTGMGEATVNHMFHKFTERFAREFFPVWVRMPNED-ELKDIMKTYDEVGMSGAMGSMDGTHIE 215          
BLAST of mRNA_D-mesarthrocarpus_Contig10908.1.1 vs. uniprot
Match: A0A6H5JHI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI0_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 9.010e-16
Identity = 54/144 (37.50%), Postives = 78/144 (54.17%), Query Frame = 1
Query:   94 WMKMLREESLGDPESRGAILFRRRFRVPYPFFVPLVREVRQQSWLGSSGADAAGRQASPWGRRCYRSFTS-SEEKLLDDMFFMARMSEGTA*RVLHKFCECFS*HMFETWIGL-LKSN*ELQRTMEAYHRLGFTGAVGSTDVTY 519
            W +ML ++ L D  S  +  FR  FRVP  FF+ LV  V+ + W  +SG DAA RQ+ P   +     T          ++ ++ MS  T   + HKFC+ F+  M++  I L  + N EL   M+ Y RLGF+GA+GS DVT+
Sbjct:   36 WAQMLEDKDLEDSNSISSKQFRLDFRVPDSFFLRLVALVKSKDWFTTSGCDAARRQSHPVEHKVLAWLTILGRGNCFASIYQVSWMSAKTVQTMFHKFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTH 179          
BLAST of mRNA_D-mesarthrocarpus_Contig10908.1.1 vs. uniprot
Match: A0A6H5KLF8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLF8_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 3.570e-15
Identity = 64/202 (31.68%), Postives = 93/202 (46.04%), Query Frame = 1
Query:   82 RESPWMKMLRE-ESLGDPESRGAILFRRRFRVPYPFFVPLVREVRQQSWLG--SSGADAAGRQASPWGRRCYRSFTS-----SEEKLLDDMFFMARMSEGTA*RVLHKFCECFS*HMFETWIGLLKSN*ELQRTMEAYHRLGFTGAVGSTDVTYFELE*VSSG*H*VVQRQGRLPHSGMRGHRR-PFHACLGGNMRVSGRTQ 660
            R  PW +ML + + L DP +R A  FRRRFRVPYPFF+ LV  V+   W G  ++  +  GR      RRC                 DD+  +  M E T  ++ HKF   F+   F  W+ +   + EL+  M+ Y  +G TGA+GS D T+ +          V     R  H G  G+    ++  +  +MRV   T+
Sbjct:   28 RALPWARMLEKADLLQDPSTREAKQFRRRFRVPYPFFLSLVDGVKAGKWPGFTTNEFELGGRGT----RRCIPVEIDVLRILGRGNYFDDVSEVTGMGEATVNQLFHKFTGRFAREFFPVWVRMPNED-ELKEIMKTYDEVGMTGAMGSMDGTHLQWT--------VCPYSERSSHVGKEGYATLVYNVAVSHDMRVLSCTR 216          
BLAST of mRNA_D-mesarthrocarpus_Contig10908.1.1 vs. uniprot
Match: A0A6H5JHC3_9PHAE (DDE Tnp4 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHC3_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 1.020e-14
Identity = 59/176 (33.52%), Postives = 89/176 (50.57%), Query Frame = 1
Query:   73 PKFRESPWMKMLRE--ESLGDPESRGAILFRRRFRVPYPFFVPLVREVRQQSWLGSSGADAAGRQASPWGRRCYRSFTSSEEKLL------DDMFFMARMSEGTA*RVLHKFCECFS*HMFETWIGLLKSN*ELQRTMEAYHRLGFTGAVGSTDVTYFELE*V-SSG*H*VVQRQG 573
            P +  S W  MLRE  ++L DP ++ A LFRRRFR+PYP F+ LV+E++   W G +        A+  G R  R     E K+L      DD+  ++ +SE T  RV H+F + F+   F   +   +    L+  +  Y  +GF G  GS D T+   +   +SG H  V ++G
Sbjct:   62 PDYHNSAWAIMLREKEDALADPTTKDARLFRRRFRMPYPIFLELVKEIKSAGWKGFTT------DATDLGGRGTRPCIPVELKVLGRGNFFDDIPQLSFISEQTIQRVFHEFTQRFALEFFPKHVKFPQGA-HLEEILREYKDVGFGGCAGSMDCTHIHYQSAPNSGRHSYVGKEG 230          
BLAST of mRNA_D-mesarthrocarpus_Contig10908.1.1 vs. uniprot
Match: A0A6H5JP98_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP98_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 4.550e-13
Identity = 54/147 (36.73%), Postives = 72/147 (48.98%), Query Frame = 1
Query:  121 LGDPESRGAILFRRRFRVPYPFFVPLVREVRQQSW--LGSSGADAAGRQASPWGRRCYRSFTSSEEKLL------------DDMFFMARMSEGTA*RVLHKFCECFS*HMFETWIGLLKSN*ELQRTMEAYHRLGFTGAVGSTDVTY 519
            L DP +R A  FRRRFRVPYPFF+ LV EV+   W    +   +  GR      RRC       E K+L            DD+  +  M E T   + HKF E F+   F  W+ +  +  EL+  M+ Y  +G TGA+GS D T+
Sbjct:   75 LQDPSTREAKQFRRRFRVPYPFFLSLVDEVKAGKWPVFTTDEFELGGRGT----RRCI----PVEIKVLAVLRILGRGNYFDDVSEVTGMGEATVNHLFHKFTERFAREFFPVWVRM-PNEVELKEIMKTYDEVGMTGAMGSMDGTH 212          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10908.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JBE2_9PHAE2.930e-2039.58Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L642_9PHAE4.100e-1938.19Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JPH7_9PHAE1.220e-1737.93Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K8I3_9PHAE1.840e-1732.52Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
D7FPI7_ECTSI2.530e-1737.50Transposon protein, putative, Pong sub-class n=1 T... [more]
A0A6H5JRQ7_9PHAE2.930e-1736.25Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHI0_9PHAE9.010e-1637.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLF8_9PHAE3.570e-1531.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHC3_9PHAE1.020e-1433.52DDE Tnp4 domain-containing protein n=2 Tax=Ectocar... [more]
A0A6H5JP98_9PHAE4.550e-1336.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10908contigD-mesarthrocarpus_Contig10908:260..1249 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size990
Hectar predicted targeting categoryother localisation
Exons1
Cds size270
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789221.981761-UTR-D-mesarthrocarpus_Contig10908:259..8831680789221.981761-UTR-D-mesarthrocarpus_Contig10908:259..883Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig10908 260..883 -
1680789222.0060122-UTR-D-mesarthrocarpus_Contig10908:1153..12491680789222.0060122-UTR-D-mesarthrocarpus_Contig10908:1153..1249Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig10908 1154..1249 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789221.9951203-CDS-D-mesarthrocarpus_Contig10908:883..11531680789221.9951203-CDS-D-mesarthrocarpus_Contig10908:883..1153Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10908 884..1153 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10908.1.1prot_D-mesarthrocarpus_Contig10908.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10908 884..1153 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10908.1.1

>prot_D-mesarthrocarpus_Contig10908.1.1 ID=prot_D-mesarthrocarpus_Contig10908.1.1|Name=mRNA_D-mesarthrocarpus_Contig10908.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=90bp
MKMLREESLGDPESRGAILFRRRFRVPYPFFVPLVREVRQQSWLGSSGAD
AAGRQASPWGRRCYRSFTSSEEKLLDDMFFMARMSEGTA*
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mRNA from alignment at D-mesarthrocarpus_Contig10908:260..1249-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10908.1.1 ID=mRNA_D-mesarthrocarpus_Contig10908.1.1|Name=mRNA_D-mesarthrocarpus_Contig10908.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=990bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10908:260..1249- (Discosporangium mesarthrocarpum MT17_79)
GGGCGATGCTGGAGAGCGAGGATGAAGAGGCGCAGTCCGTGAGGGAGGGT GGTACAGTGACGTGTATCCACGCCGAAATTTAGGGAGTCGCCATGGATGA AGATGCTCCGAGAGGAGAGCCTTGGCGATCCGGAGTCTAGGGGTGCGATA TTGTTTCGTCGGAGGTTCCGCGTCCCCTATCCTTTCTTTGTACCACTCGT AAGAGAGGTAAGGCAGCAGAGTTGGCTTGGAAGTAGCGGGGCTGATGCTG CTGGCCGCCAGGCATCCCCCTGGGGGCGAAGGTGTTATCGGTCTTTCACA TCCTCGGAAGAGAAACTACTCGACGATATGTTTTTTATGGCGAGGATGAG TGAGGGTACGGCATAGAGGGTGTTACACAAGTTTTGCGAGTGCTTCAGTT GACACATGTTCGAAACTTGGATTGGGTTGCTTAAGAGTAACTAGGAATTG CAACGAACCATGGAAGCGTACCATCGTTTAGGGTTCACGGGTGCAGTGGG GTCAACCGATGTGACCTATTTTGAGTTGGAATAAGTGTCCAGCGGTTGAC ACTAGGTTGTACAAAGGCAAGGAAGGCTTCCCCACTCTGGCATGCGAGGT CACCGTCGACCATTCCATGCGTGTTTAGGGGGCAATATGAGGGTCTCCGG GCGCACGCAATGATAAGAAGATAGTCCTCTATGACGACACCGTTGTCTAG CTCCGGATGAAAAAAAGGTTTATGGACTTGCTACCTGCCCACTTTGGCTA TAGAAGGAGGTGTGGGCAGATGGAGTGGCTCCGAAGTTCAACTCCCCCTC CACTGCCTCTACTGACACTTGAATGTCCTTGGGTCCTGGAGGTGGTGTCA GGGTTGACGGAATGTGTAGGGGGGGAGATGGGGTTTGTCAGGAGGACTAG CAGATGTTTGTTCCTCACCAAGCTTGGTTCTTGGCTTATTGTGTGCCTTG CAACAACACAATAATACTTAAAATCAGAATCATACGTCCC
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10908:260..1249-

>mRNA_D-mesarthrocarpus_Contig10908.1.1 ID=mRNA_D-mesarthrocarpus_Contig10908.1.1|Name=mRNA_D-mesarthrocarpus_Contig10908.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=270bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10908:260..1249- (Discosporangium mesarthrocarpum MT17_79)
ATGAAGATGCTCCGAGAGGAGAGCCTTGGCGATCCGGAGTCTAGGGGTGC
GATATTGTTTCGTCGGAGGTTCCGCGTCCCCTATCCTTTCTTTGTACCAC
TCGTAAGAGAGGTAAGGCAGCAGAGTTGGCTTGGAAGTAGCGGGGCTGAT
GCTGCTGGCCGCCAGGCATCCCCCTGGGGGCGAAGGTGTTATCGGTCTTT
CACATCCTCGGAAGAGAAACTACTCGACGATATGTTTTTTATGGCGAGGA
TGAGTGAGGGTACGGCATAG
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