mRNA_D-mesarthrocarpus_Contig10904.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10904.2.1
Unique NamemRNA_D-mesarthrocarpus_Contig10904.2.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10904.2.1 vs. uniprot
Match: A0A6H5JRC2_9PHAE (Xanthine dehydrogenase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRC2_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 1.840e-13
Identity = 36/50 (72.00%), Postives = 42/50 (84.00%), Query Frame = 1 
Query:    1 QARRREDDISVVTSGMRVLLEPGEG-WVIKEASLWFGGMAPTTVGAPLAE 147
            QARRREDDIS+VT G+R++LE   G WV+KEAS+ FGGMAPTTV APL E
Sbjct:  537 QARRREDDISIVTGGIRLVLETRGGKWVVKEASMCFGGMAPTTVAAPLTE 586
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BLAST of mRNA_D-mesarthrocarpus_Contig10904.2.1 vs. uniprot
Match: D7G4V3_ECTSI (Xanthine dehydrogenase n=3 Tax=Ectocarpus TaxID=2879 RepID=D7G4V3_ECTSI)

HSP 1 Score: 72.0 bits (175), Expect = 2.530e-13
Identity = 34/51 (66.67%), Postives = 42/51 (82.35%), Query Frame = 1 
Query:    1 QARRREDDISVVTSGMRVLLEPGEG-WVIKEASLWFGGMAPTTVGAPLAEV 150
            QARRREDDIS+VT G+R++LEP  G W++ + S+ FGGMAPTTV APL EV
Sbjct:  536 QARRREDDISIVTGGIRLMLEPRGGKWIVMDTSMCFGGMAPTTVAAPLTEV 586
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BLAST of mRNA_D-mesarthrocarpus_Contig10904.2.1 vs. uniprot
Match: A0A7S3VF44_9STRA (Hypothetical protein n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VF44_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 5.120e-11
Identity = 36/59 (61.02%), Postives = 44/59 (74.58%), Query Frame = 1 
Query:    1 QARRREDDISVVTSGMRVLLEPGE---GWVIKEASLWFGGMAPTTVGAPLAEVKAGGES 168
            QARRREDDIS+VTSGMR+ +EP +   G++I +A L FGGMAPTTV A L E    G+S
Sbjct:  529 QARRREDDISIVTSGMRIEVEPAKNNKGYIISKAHLAFGGMAPTTVMAELTEKFLVGKS 587
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BLAST of mRNA_D-mesarthrocarpus_Contig10904.2.1 vs. uniprot
Match: A0A7S0IPX0_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0IPX0_9EUKA)

HSP 1 Score: 63.2 bits (152), Expect = 3.330e-10
Identity = 31/44 (70.45%), Postives = 38/44 (86.36%), Query Frame = 1 
Query:    1 QARRREDDISVVTSGMRVLLE-PGEGWVIKEASLWFGGMAPTTV 129
            QARRREDDIS+VT+G+RV L+   EGWV++EAS  +GGMAPTTV
Sbjct:  391 QARRREDDISIVTAGLRVRLQLVDEGWVVEEASFAYGGMAPTTV 434
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BLAST of mRNA_D-mesarthrocarpus_Contig10904.2.1 vs. uniprot
Match: B8CFF5_THAPS (FAD-binding PCMH-type domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CFF5_THAPS)

HSP 1 Score: 63.2 bits (152), Expect = 3.340e-10
Identity = 31/44 (70.45%), Postives = 36/44 (81.82%), Query Frame = 1 
Query:    1 QARRREDDISVVTSGMRVLLEPGE-GWVIKEASLWFGGMAPTTV 129
            QARRREDDIS+VTSGMR+ L P E GW+I E ++ FGGMAP TV
Sbjct:  389 QARRREDDISIVTSGMRMKLSPAESGWIIDEIAIAFGGMAPKTV 432
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BLAST of mRNA_D-mesarthrocarpus_Contig10904.2.1 vs. uniprot
Match: A0A6S8ELY0_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A6S8ELY0_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 6.230e-10
Identity = 30/46 (65.22%), Postives = 37/46 (80.43%), Query Frame = 1 
Query:    1 QARRREDDISVVTSGMRVLLEPG-EGWVIKEASLWFGGMAPTTVGA 135
            QA+RREDDIS+VT+GMR+ L+P  + W+I EA   FGGMAPTTV A
Sbjct:  425 QAKRREDDISIVTAGMRISLKPSSDSWIISEACFGFGGMAPTTVTA 470
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BLAST of mRNA_D-mesarthrocarpus_Contig10904.2.1 vs. uniprot
Match: A0A836C8N1_9STRA (Xanthine dehydrogenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8N1_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 1.170e-9
Identity = 31/46 (67.39%), Postives = 37/46 (80.43%), Query Frame = 1 
Query:    1 QARRREDDISVVTSGMRVLLEPG-EGWVIKEASLWFGGMAPTTVGA 135
            QARRREDDIS+VT GMR+ L+P  +GW++  A L FGGMAPTTV A
Sbjct:  432 QARRREDDISIVTCGMRLNLQPSADGWLVAGADLVFGGMAPTTVTA 477
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BLAST of mRNA_D-mesarthrocarpus_Contig10904.2.1 vs. uniprot
Match: A0A7S4RBL2_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RBL2_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 2.170e-9
Identity = 30/45 (66.67%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:    1 QARRREDDISVVTSGMRVLLEPGEG--WVIKEASLWFGGMAPTTV 129
            QARRREDDIS+VTSGMR++L P E   +VI++ +L FGGMAPTT+
Sbjct:  545 QARRREDDISIVTSGMRIILAPKESEHYVIEDMTLAFGGMAPTTI 589
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BLAST of mRNA_D-mesarthrocarpus_Contig10904.2.1 vs. uniprot
Match: A0A7S4RBS3_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RBS3_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 2.180e-9
Identity = 30/45 (66.67%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:    1 QARRREDDISVVTSGMRVLLEPGEG--WVIKEASLWFGGMAPTTV 129
            QARRREDDIS+VTSGMR++L P E   +VI++ +L FGGMAPTT+
Sbjct:  545 QARRREDDISIVTSGMRIILAPKESEHYVIEDMTLAFGGMAPTTI 589
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BLAST of mRNA_D-mesarthrocarpus_Contig10904.2.1 vs. uniprot
Match: A0A1E7F586_9STRA (Xanthine dehydrogenase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F586_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 4.070e-9
Identity = 35/57 (61.40%), Postives = 43/57 (75.44%), Query Frame = 1 
Query:    1 QARRREDDISVVTSGMRVLLEPGEG-WVIKEASLWFGGMAPTTVGA-PLAEVKAGGE 165
            QARRREDDIS+VTSGMR+ L P +G ++I+ A+L FGGMAP TV A   A+V  G E
Sbjct:  465 QARRREDDISIVTSGMRIKLVPKDGKFIIEHAALAFGGMAPKTVMAVKTAKVLIGSE 521
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10904.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JRC2_9PHAE1.840e-1372.00Xanthine dehydrogenase n=1 Tax=Ectocarpus sp. CCAP... [more]
D7G4V3_ECTSI2.530e-1366.67Xanthine dehydrogenase n=3 Tax=Ectocarpus TaxID=28... [more]
A0A7S3VF44_9STRA5.120e-1161.02Hypothetical protein n=2 Tax=Chaetoceros debilis T... [more]
A0A7S0IPX0_9EUKA3.330e-1070.45Hypothetical protein (Fragment) n=1 Tax=Calcidiscu... [more]
B8CFF5_THAPS3.340e-1070.45FAD-binding PCMH-type domain-containing protein n=... [more]
A0A6S8ELY0_9STRA6.230e-1065.22Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A836C8N1_9STRA1.170e-967.39Xanthine dehydrogenase n=1 Tax=Tribonema minus Tax... [more]
A0A7S4RBL2_9STRA2.170e-966.67Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7S4RBS3_9STRA2.180e-966.67Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A1E7F586_9STRA4.070e-961.40Xanthine dehydrogenase n=1 Tax=Fragilariopsis cyli... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10904contigD-mesarthrocarpus_Contig10904:3216..3386 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7G4V2
PFAMsAld_Xan_dh_C,Ald_Xan_dh_C2,CO_deh_flav_C,FAD_binding_5,Fer2,Fer2_2
Model size171
Max annot lvl2759|Eukaryota
KEGG rclassRC00143,RC02017,RC02199
KEGG koko:K00106
KEGG ReactionR01768,R01769,R02103,R02107,R07942,R07977,R07978,R07979,R08235
KEGG Pathwayko00230,ko00232,ko00983,ko01100,ko01110,ko01120,ko04146,map00230,map00232,map00983,map01100,map01110,map01120,map04146
KEGG ModuleM00546
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000166,GO:0003674,GO:0003824,GO:0004854,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006144,GO:0006145,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009112,GO:0009115,GO:0009987,GO:0016491,GO:0016725,GO:0016726,GO:0016903,GO:0019439,GO:0034641,GO:0036094,GO:0043167,GO:0043168,GO:0043546,GO:0044237,GO:0044238,GO:0044248,GO:0044270,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046110,GO:0046113,GO:0046483,GO:0046700,GO:0048037,GO:0050660,GO:0050662,GO:0051536,GO:0051537,GO:0051540,GO:0055086,GO:0055114,GO:0071704,GO:0072521,GO:0072523,GO:0097159,GO:1901265,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901565,GO:1901575
Exons1
Evalue1.1e-16
EggNOG OGsCOG4631@1|root,KOG0430@2759|Eukaryota
EC1.17.1.4,1.17.3.2
Descriptionxanthine catabolic process
Cds size171
COG categoryC
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789221.8216937-CDS-D-mesarthrocarpus_Contig10904:3215..33861680789221.8216937-CDS-D-mesarthrocarpus_Contig10904:3215..3386Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10904 3216..3386 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10904.2.1prot_D-mesarthrocarpus_Contig10904.2.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10904 3216..3386 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10904.2.1

>prot_D-mesarthrocarpus_Contig10904.2.1 ID=prot_D-mesarthrocarpus_Contig10904.2.1|Name=mRNA_D-mesarthrocarpus_Contig10904.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=57bp
QARRREDDISVVTSGMRVLLEPGEGWVIKEASLWFGGMAPTTVGAPLAEV
KAGGES*
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mRNA from alignment at D-mesarthrocarpus_Contig10904:3216..3386-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10904.2.1 ID=mRNA_D-mesarthrocarpus_Contig10904.2.1|Name=mRNA_D-mesarthrocarpus_Contig10904.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=171bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10904:3216..3386- (Discosporangium mesarthrocarpum MT17_79)
CAGGCCAGGAGGAGGGAGGATGACATCTCAGTGGTAACCAGCGGCATGCG
CGTGCTCCTGGAGCCAGGGGAAGGATGGGTCATCAAAGAGGCCTCCCTGT
GGTTTGGGGGTATGGCTCCCACCACTGTCGGCGCCCCTCTGGCAGAGGTA
AAGGCAGGAGGAGAGAGTTAA
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10904:3216..3386-

>mRNA_D-mesarthrocarpus_Contig10904.2.1 ID=mRNA_D-mesarthrocarpus_Contig10904.2.1|Name=mRNA_D-mesarthrocarpus_Contig10904.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=171bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10904:3216..3386- (Discosporangium mesarthrocarpum MT17_79)
CAGGCCAGGAGGAGGGAGGATGACATCTCAGTGGTAACCAGCGGCATGCG
CGTGCTCCTGGAGCCAGGGGAAGGATGGGTCATCAAAGAGGCCTCCCTGT
GGTTTGGGGGTATGGCTCCCACCACTGTCGGCGCCCCTCTGGCAGAGGTA
AAGGCAGGAGGAGAGAGTTAA
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