mRNA_D-mesarthrocarpus_Contig10896.3.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10896.3.1
Unique NamemRNA_D-mesarthrocarpus_Contig10896.3.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10896.3.1 vs. uniprot
Match: A0A7S4V0U0_9STRA (Hypothetical protein (Fragment) n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4V0U0_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 1.560e-12
Identity = 31/56 (55.36%), Postives = 45/56 (80.36%), Query Frame = 1 
Query:    1 KTMSETELAVMNRYFYFQLANIYVTVTAGSIVQDLTALINSPSSILTLLGKQLPTI 168
            KT+S+ + ++M RYFY+QLANIY+TVTAGSI   L  +++ PS+IL +LG +LPT+
Sbjct:  351 KTLSDVQASIMGRYFYYQLANIYITVTAGSIYNSLADILDRPSAILEILGTKLPTV 406
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BLAST of mRNA_D-mesarthrocarpus_Contig10896.3.1 vs. uniprot
Match: A0A7S2GWI0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2GWI0_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 6.140e-12
Identity = 29/56 (51.79%), Postives = 43/56 (76.79%), Query Frame = 1 
Query:    1 KTMSETELAVMNRYFYFQLANIYVTVTAGSIVQDLTALINSPSSILTLLGKQLPTI 168
            KT S+ E +++ RYFY+QLANIY+TVTAGSI   L+ +++ P ++  +LGK LPT+
Sbjct:  112 KTHSDVEKSILTRYFYYQLANIYITVTAGSIWTSLSDILDHPGNVFAILGKSLPTV 167
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BLAST of mRNA_D-mesarthrocarpus_Contig10896.3.1 vs. uniprot
Match: A0A8J9X7E6_PHATR (Hypothetical protein n=1 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9X7E6_PHATR)

HSP 1 Score: 66.6 bits (161), Expect = 1.900e-11
Identity = 31/56 (55.36%), Postives = 47/56 (83.93%), Query Frame = 1 
Query:    1 KTMSETELAVMNRYFYFQLANIYVTVTAGSIVQDLTALINSPSSILTLLGKQLPTI 168
            KT S+ + ++++RYFY+QLANIYV+VTAGSI++ L+ +++ PS+IL LLG  LPT+
Sbjct:  195 KTYSDVQSSMLSRYFYYQLANIYVSVTAGSILKSLSDILDHPSNILQLLGDSLPTM 250
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BLAST of mRNA_D-mesarthrocarpus_Contig10896.3.1 vs. uniprot
Match: K0SU52_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SU52_THAOC)

HSP 1 Score: 66.6 bits (161), Expect = 1.910e-11
Identity = 29/56 (51.79%), Postives = 44/56 (78.57%), Query Frame = 1 
Query:    1 KTMSETELAVMNRYFYFQLANIYVTVTAGSIVQDLTALINSPSSILTLLGKQLPTI 168
            KT S+ + +V+ RYFY+QLANI++TVTAGSI++ L  ++  P++IL +LGK LP +
Sbjct:  668 KTQSDVQRSVIGRYFYYQLANIFITVTAGSILESLNEIVEHPTNILAILGKTLPNV 723
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BLAST of mRNA_D-mesarthrocarpus_Contig10896.3.1 vs. uniprot
Match: B7FTE9_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FTE9_PHATC)

HSP 1 Score: 66.6 bits (161), Expect = 1.910e-11
Identity = 31/56 (55.36%), Postives = 47/56 (83.93%), Query Frame = 1 
Query:    1 KTMSETELAVMNRYFYFQLANIYVTVTAGSIVQDLTALINSPSSILTLLGKQLPTI 168
            KT S+ + ++++RYFY+QLANIYV+VTAGSI++ L+ +++ PS+IL LLG  LPT+
Sbjct:  685 KTYSDVQSSMLSRYFYYQLANIYVSVTAGSILKSLSDILDHPSNILQLLGDSLPTM 740
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BLAST of mRNA_D-mesarthrocarpus_Contig10896.3.1 vs. uniprot
Match: A0A836CNV2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNV2_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 1.920e-11
Identity = 33/56 (58.93%), Postives = 44/56 (78.57%), Query Frame = 1 
Query:    1 KTMSETELAVMNRYFYFQLANIYVTVTAGSIVQDLTALINSPSSILTLLGKQLPTI 168
            K+ SE E AVM RYFYFQLAN+YV+VT+GSI+  L  ++ +PSS L+LLG+ LP +
Sbjct: 1084 KSESEVERAVMGRYFYFQLANVYVSVTSGSILDALRDILENPSSALSLLGQALPGV 1139
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BLAST of mRNA_D-mesarthrocarpus_Contig10896.3.1 vs. uniprot
Match: A0A7S4VLS2_9STRA (Hypothetical protein n=4 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VLS2_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 2.620e-11
Identity = 29/56 (51.79%), Postives = 43/56 (76.79%), Query Frame = 1 
Query:    1 KTMSETELAVMNRYFYFQLANIYVTVTAGSIVQDLTALINSPSSILTLLGKQLPTI 168
            KT S+ E +++ RYFY+QLANIY+TVTAGSI   L+ +++ P ++  +LGK LPT+
Sbjct:  825 KTYSDVEKSILTRYFYYQLANIYITVTAGSIWTSLSDILDHPGNVFAILGKSLPTV 880
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BLAST of mRNA_D-mesarthrocarpus_Contig10896.3.1 vs. uniprot
Match: B8C4F1_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C4F1_THAPS)

HSP 1 Score: 65.1 bits (157), Expect = 6.660e-11
Identity = 28/56 (50.00%), Postives = 42/56 (75.00%), Query Frame = 1 
Query:    1 KTMSETELAVMNRYFYFQLANIYVTVTAGSIVQDLTALINSPSSILTLLGKQLPTI 168
            KT S+ + +++ RYFY+QLANIY+TVTAGSI++ L  +   PS++  +LGK LP +
Sbjct:  519 KTQSDVQKSIIGRYFYYQLANIYITVTAGSILESLGEIAEHPSNVFAILGKSLPNV 574
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BLAST of mRNA_D-mesarthrocarpus_Contig10896.3.1 vs. uniprot
Match: A0A7S2NWW9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NWW9_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 8.180e-11
Identity = 30/56 (53.57%), Postives = 42/56 (75.00%), Query Frame = 1 
Query:    1 KTMSETELAVMNRYFYFQLANIYVTVTAGSIVQDLTALINSPSSILTLLGKQLPTI 168
            KT S+ + +++NRYFY+QLANI++TVTAGSI   L  L+ SP S   +LG+ LPT+
Sbjct:  207 KTYSDVQNSILNRYFYYQLANIFITVTAGSIWDSLNDLLYSPYSAFVILGRSLPTV 262
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BLAST of mRNA_D-mesarthrocarpus_Contig10896.3.1 vs. uniprot
Match: A0A7S2S2R1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S2R1_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 6.930e-10
Identity = 29/56 (51.79%), Postives = 39/56 (69.64%), Query Frame = 1 
Query:    1 KTMSETELAVMNRYFYFQLANIYVTVTAGSIVQDLTALINSPSSILTLLGKQLPTI 168
            K++S+ + +V+ RYFY+QLANIY+ VTAGSI   L  +IN P SI  + G  LP I
Sbjct:   57 KSLSDIQRSVVVRYFYYQLANIYIIVTAGSIWNSLATIINHPGSIFEIFGNSLPVI 112
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10896.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4V0U0_9STRA1.560e-1255.36Hypothetical protein (Fragment) n=2 Tax=Ditylum br... [more]
A0A7S2GWI0_9STRA6.140e-1251.79Hypothetical protein (Fragment) n=1 Tax=Helicothec... [more]
A0A8J9X7E6_PHATR1.900e-1155.36Hypothetical protein n=1 Tax=Phaeodactylum tricorn... [more]
K0SU52_THAOC1.910e-1151.79Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
B7FTE9_PHATC1.910e-1155.36Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A836CNV2_9STRA1.920e-1158.93Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S4VLS2_9STRA2.620e-1151.79Hypothetical protein n=4 Tax=Ditylum brightwellii ... [more]
B8C4F1_THAPS6.660e-1150.00Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7S2NWW9_9STRA8.180e-1153.57Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A7S2S2R1_9STRA6.930e-1051.79Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10896contigD-mesarthrocarpus_Contig10896:2826..3558 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2850.Phatr43772
PFAMsPHM7_cyt,RSN1_7TM,RSN1_TM
Model size168
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Evalue6.54e-11
EggNOG OGsCOG5594@1|root,KOG1134@2759|Eukaryota,2XEBS@2836|Bacillariophyta
DescriptionCytosolic domain of 10TM putative phosphate transporter
Cds size162
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789220.3309114-UTR-D-mesarthrocarpus_Contig10896:2825..28311680789220.3309114-UTR-D-mesarthrocarpus_Contig10896:2825..2831Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig10896 2826..2831 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789220.3416345-CDS-D-mesarthrocarpus_Contig10896:2831..29241680789220.3416345-CDS-D-mesarthrocarpus_Contig10896:2831..2924Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10896 2832..2924 +
1680789220.354745-CDS-D-mesarthrocarpus_Contig10896:3489..35581680789220.354745-CDS-D-mesarthrocarpus_Contig10896:3489..3558Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10896 3490..3558 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10896.3.1prot_D-mesarthrocarpus_Contig10896.3.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10896 2832..3558 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10896.3.1

>prot_D-mesarthrocarpus_Contig10896.3.1 ID=prot_D-mesarthrocarpus_Contig10896.3.1|Name=mRNA_D-mesarthrocarpus_Contig10896.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=54bp
MSETELAVMNRYFYFQLANIYVTVTAGSIVQDLTALINSPSSILTLLGKQ
LPTI
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mRNA from alignment at D-mesarthrocarpus_Contig10896:2826..3558+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10896.3.1 ID=mRNA_D-mesarthrocarpus_Contig10896.3.1|Name=mRNA_D-mesarthrocarpus_Contig10896.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=733bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10896:2826..3558+ (Discosporangium mesarthrocarpum MT17_79)
AAGACCATGAGCGAGACGGAGCTTGCCGTCATGAACCGTTACTTCTACTT
CCAGCTTGCCAACATCTACGTGACTGTTACGGCTGGCTCTATTGTGCAGG
TGGGGTTTGCTCTGCTCTTCACGCTTGTGACCCTTCCTGGTACAGCACGT
AGCAAAAAAAGCACCTTGTCCGGGTAGGGGGGGGGGGTCGCCTGCACATT
GAGATCAGGTTTCCACACCTTGTGAATGCGGTAAAAGAAACATGGTCAAA
GTATTGGCCAGTTCGTTGCCTGTGCTCGGACAGAAGAAAGCAGAGTGAGC
CCAGCTGTACCGCCTCGAACTCATGCATGAGATGGGAAAAAGTGATCGTG
AGGTGCCACCCGGAAAACAGCGGGTGCAAATCTAGTGTTCCACCCTCACC
CCACCTCTGCACCTAGTGAAACGGGTGTCGAAACTCACTCCGCTGCTGGT
GATGAGTGTATTTGTTGAGCCAGTGTACCAGCACGACTCACTCACCTTCT
CTACAGGTTAGGGTTAGGGTTGTGTCTCACTTGCTCTCCTCGGTGCCACT
GTATTGCCTCTACTATCTGCTCACCTTTTGCACAGACTTATCACCTCGTT
TTTTTCTTCCCCCCACCCCATGCTTTGCCCGCCTGCCCCTCCCATGCCCA
TCTGATGTGCTCAGGACCTGACCGCCCTGATCAACAGCCCTAGTTCCATC
TTGACACTGCTGGGAAAGCAGCTACCCACTATT
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10896:2826..3558+

>mRNA_D-mesarthrocarpus_Contig10896.3.1 ID=mRNA_D-mesarthrocarpus_Contig10896.3.1|Name=mRNA_D-mesarthrocarpus_Contig10896.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=162bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10896:2826..3558+ (Discosporangium mesarthrocarpum MT17_79)
ATGAGCGAGACGGAGCTTGCCGTCATGAACCGTTACTTCTACTTCCAGCT
TGCCAACATCTACGTGACTGTTACGGCTGGCTCTATTGTGCAGGACCTGA
CCGCCCTGATCAACAGCCCTAGTTCCATCTTGACACTGCTGGGAAAGCAG
CTACCCACTATT
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