mRNA_D-mesarthrocarpus_Contig10885.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10885.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10885.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10885.1.1 vs. uniprot
Match: A0A6H5JYY0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYY0_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 2.740e-13
Identity = 40/88 (45.45%), Postives = 52/88 (59.09%), Query Frame = 2 
Query:  227 HCKLEEDIEAWEACVVYYRRPKKGGGRXXX-LSGXXXXXXXXXGARWLAMGEDDGPGANASFQGRTFQEEPAAPRLLRLVLGWVKERA 487
            HCK+EE I+AWEACVVY+RRP K         +G         G   ++   + GPG N + QG TF+E  A PRLLRL+  W+KE+A
Sbjct: 1693 HCKVEEHIDAWEACVVYFRRPLKNTANVGGSAAGSHLLSGFGRGGEGIS---NAGPGVNNAHQGHTFKEPSATPRLLRLIQRWIKEQA 1777
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BLAST of mRNA_D-mesarthrocarpus_Contig10885.1.1 vs. uniprot
Match: D7FHS8_ECTSI (SNF2 helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHS8_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 9.370e-13
Identity = 41/90 (45.56%), Postives = 53/90 (58.89%), Query Frame = 2 
Query:  227 HCKLEEDIEAWEACVVYYRRPKKGGGRXXXLSGXXXXXXXXXGARWLAMGE---DDGPGANASFQGRTFQEEPAAPRLLRLVLGWVKERA 487
            HCK+EE I+AWEACVVY+RRP K        +           +R+   GE   + GPG N + QG TF+E  A PRLLRL+  W+KE+A
Sbjct: 1792 HCKVEEHIDAWEACVVYFRRPLKNTADAGGSAAGSPFL-----SRFGPGGEGTNNAGPGVNNAHQGHTFKEPSATPRLLRLIQRWIKEQA 1876
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10885.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JYY0_9PHAE2.740e-1345.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FHS8_ECTSI9.370e-1345.56SNF2 helicase n=1 Tax=Ectocarpus siliculosus TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10885contigD-mesarthrocarpus_Contig10885:306..2820 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FHS8
PFAMsHelicase_C,SNF2_N
Model size537
Max annot lvl2759|Eukaryota
KEGG koko:K15710
Hectar predicted targeting categoryother localisation
Exons4
Evalue5.12e-14
EggNOG OGsCOG0553@1|root,KOG0298@2759|Eukaryota
EC2.3.2.27
DescriptionATP binding
Cds size429
COG categoryKL
BRITEko00000,ko01000,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789219.8326244-CDS-D-mesarthrocarpus_Contig10885:305..4131680789219.8326244-CDS-D-mesarthrocarpus_Contig10885:305..413Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10885 306..413 -
1680789219.8514042-CDS-D-mesarthrocarpus_Contig10885:1036..11001680789219.8514042-CDS-D-mesarthrocarpus_Contig10885:1036..1100Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10885 1037..1100 -
1680789219.8620124-CDS-D-mesarthrocarpus_Contig10885:2132..22701680789219.8620124-CDS-D-mesarthrocarpus_Contig10885:2132..2270Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10885 2133..2270 -
1680789219.8717427-CDS-D-mesarthrocarpus_Contig10885:2595..27141680789219.8717427-CDS-D-mesarthrocarpus_Contig10885:2595..2714Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10885 2596..2714 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789219.8823338-UTR-D-mesarthrocarpus_Contig10885:2714..28201680789219.8823338-UTR-D-mesarthrocarpus_Contig10885:2714..2820Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig10885 2715..2820 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10885.1.1prot_D-mesarthrocarpus_Contig10885.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10885 306..2714 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10885.1.1

>prot_D-mesarthrocarpus_Contig10885.1.1 ID=prot_D-mesarthrocarpus_Contig10885.1.1|Name=mRNA_D-mesarthrocarpus_Contig10885.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=143bp
MWIGPEQKLDKVHRMVAKKYEASQIQGLWSLGLQSLGLQRHCKLEEDIEA
WEACVVYYRRPKKGGGRGGGLSGSGSGAGVGSGARWLAMGEDDGPGANAS
FQGRTFQEEPAAPRLLRLVLGWVKERARARAGAGAGLGGEAEM
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mRNA from alignment at D-mesarthrocarpus_Contig10885:306..2820-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10885.1.1 ID=mRNA_D-mesarthrocarpus_Contig10885.1.1|Name=mRNA_D-mesarthrocarpus_Contig10885.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=2515bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10885:306..2820- (Discosporangium mesarthrocarpum MT17_79)
CCTGCACTGAATCTCACTCCTGTTGCCCGGCCATCACAAACAATTTGATT
GCCTAGATCCGTGCCATAGAAGAGTGCTGTGTCACACACATTGAGTGGGA
AGTCTGATGTGGATTGGTCCAGAACAGAAATTGGACAAGGTTCACAGGAT
GGTGGCAAAGAAATATGAGGCGTCACAAATTCAAGGGCTCTGGAGCTTAG
GACTCCAGAGCTTAGGGCTGCAGAGGTTAGGTCCATACACCTTGGCTTGC
CCTCTCTCTGTTGGGGGTGACCGCCGGCTAGAGGGCGCAAGTCGGCTCCT
GTCCCTCTTTGCCATTCATACTTCTGATGCATGTACCAAACCACCTTGTC
CCCAGAGGTAGTGTATTACTTTGGAAAACTCCTACATTCTATGCACAAAG
TAGCAGATGAATCAGCGAATTTGTCCATGCAACCATGCTTAGGGCTTACA
GGCCACCCGCTTCACCCTCCCTACCCCCCCTTCCCCCGATTCAGACTCAC
CCTGTGAAAGTCAAAGACCTACCCTCTTTTTATTCTTACCCATGCGGCAG
GCACTGCAAGCTAGAGGAGGACATAGAAGCCTGGGAGGCATGTGTTGTAT
ACTATCGAAGGCCAAAGAAGGGCGGAGGGAGAGGAGGTGGTTTGAGTGGC
AGTGGCAGTGGTGCAGGGGTGGGATCTGGAGCAAGGTGGTGAGAAAAAAC
AGCCAATCAACCTTCGTTGTAGGCCTAACCAGTTCATTCTCCCACCCATA
ACCCTTGCTGAGGCATTTCCATACCCCCTGTTATGATGGCAGTCTCAGGC
CTGGAAGAGCTGTGGATTAATCCATACTTAAGCAATCTCGATTTCATCTC
CGCACCCAATGATACATAGAAGGTACTATTTTTTCGTGGGGAAGGGTTCT
CCCATGTAGCGGGTACATCCATATCTTCAGAAGACCCCCAAAGTGAGCAG
TAAAGCAAGCATGTAACGGTGTGTAAAGTCAACCCCCCCCCCCCGCCTTT
ATTGTTGATTTTCCTGATTTTTTTTTTTTGTGAAGTGCTTTGAAGTGCTG
TGCCCCTCCCCCCCCCAGAGTAATTTGATAGCAAGATCGGGGCTCCACAC
GAGAGTGGGCCCCACCATGTCCTCTGCGAAACTACATACTCCACTGATTC
ACCTACAGCCGATGGGGAAGAGGAAGAGCTGTACATAAGCACCTTGCGGG
GCAGCAGTTTTTCCCATTAGCTCTGGGTTAGAGCTCTGAGTATATCCAAG
TATGGAGTGATGTATCTTAACGTTCTGCCAAGCAACACGTACAGGCCTCC
GTAGCAAGTTGCTGTAAGATATATATATATATATATATATATATAGGATT
TTGCTGCCAAGTTTTGCATATCTCAAGAAGCAAAATACAAGGGCTGTCTG
TCTCAGCACCTGAGAGTGAAAAGAAGACATGTGGTAGGGTGATTTATTAC
CTCAGAACTGTTGCAGAGGGTGATTTGAGTGTGATCCAATGCTCAGAGGA
ATCCACTCATTCATCCACCCAGGCCAGGTCAAGACGGATAGGAGCCGTGT
CAATCCACTTTCCCAAGCTCTCTACTTTTGCAGTGTAACCTCTTCATGAG
CTCTATTCACCGCCAAAAATCCGCCCTTCTCTTCCTTTGTCTCCCAACCC
CCCCACCCCCCACCCCCCATCCCCATCTCTCCTCCTCTGCTGTTGGGTAT
GTAAAACTTGATCAATCAAGGCTTGCCATGGGAGAGGATGATGGGCCAGG
GGCCAATGCCTCATTCCAAGGGAGAACGTTTCAGGTCCTGTGTCTACACG
TTATTTTCTGTCCTGTACGAATGCCTTCCTTGTTTTTCCTACCTTGGTGT
TACAGTTGGAGGTACCCCTCGATGGATGAGGCTTGAATGTGACACGCGTC
GGATAGTCAGCACTCACCTGTAGAGCAGAGCTCCACCATACTTTGAAAGG
GGGTGGGTGCGTTTTTTTTTTTTTTCGGCAAGGGTTTTTTTTTTTCCCGA
GGTGCTTTTTTCAGCAAGAGCCAGTGCCAGAAGAAAAACGACGCGGCAGA
CTAAGTGTAGTCCGGTTGACTGTCTGCACGTTCGAGGCAGGACCAACCGT
TTATTTGTTTTGTTTTTTTGCTTCGAGGCGTACGCACAGTTTGTTATTCA
CAGAAAAAACAGCGGCAGGGGCAGGGTTATGGGGGAGTAGGGTACCCGCC
CTCCCGCTTGATGCCGAGCCAGCCATGGTCCCTTGCACCCTTCCTCCTCT
TCTGTAGGTGAAAAAGACCCTACGTACAGCATCAGCGCATCCATCGCGTG
CTCTGGAGCCTCTCACACACTCACTGCATGCAACGCCCAATATGCCCCAG
CAGCTGTTGACCCCCTGCCGCCGCCTCTTTCTTGTGTGCCCTCATTGCTC
TCCACAGGAAGAACCGGCTGCTCCCCGATTACTTCGACTGGTCCTGGGCT
GGGTGAAGGAAAGAGCGAGGGCCAGGGCTGGGGCTGGGGCCGGGCTGGGG
GGAGAGGCAGAAATG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10885:306..2820-

>mRNA_D-mesarthrocarpus_Contig10885.1.1 ID=mRNA_D-mesarthrocarpus_Contig10885.1.1|Name=mRNA_D-mesarthrocarpus_Contig10885.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=429bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10885:306..2820- (Discosporangium mesarthrocarpum MT17_79)
ATGTGGATTGGTCCAGAACAGAAATTGGACAAGGTTCACAGGATGGTGGC
AAAGAAATATGAGGCGTCACAAATTCAAGGGCTCTGGAGCTTAGGACTCC
AGAGCTTAGGGCTGCAGAGGCACTGCAAGCTAGAGGAGGACATAGAAGCC
TGGGAGGCATGTGTTGTATACTATCGAAGGCCAAAGAAGGGCGGAGGGAG
AGGAGGTGGTTTGAGTGGCAGTGGCAGTGGTGCAGGGGTGGGATCTGGAG
CAAGGTGGCTTGCCATGGGAGAGGATGATGGGCCAGGGGCCAATGCCTCA
TTCCAAGGGAGAACGTTTCAGGAAGAACCGGCTGCTCCCCGATTACTTCG
ACTGGTCCTGGGCTGGGTGAAGGAAAGAGCGAGGGCCAGGGCTGGGGCTG
GGGCCGGGCTGGGGGGAGAGGCAGAAATG
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