mRNA_D-mesarthrocarpus_Contig10882.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10882.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10882.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig10882.1.1 vs. uniprot
Match: A0A6H5KGN2_9PHAE (P4Hc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGN2_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 5.440e-21
Identity = 44/68 (64.71%), Postives = 51/68 (75.00%), Query Frame = 1
Query:    7 SIKDFLSPSECRAWIRFGEEQGFLTSFHRATSEMAHRDNGRISIDSPWVAAALWSRMAPFFPPVMGGR 210
            SI   LSP EC AWIR+GE QGF  SFHR TSEMAHRDNGRI++ S  VAAA+++R+  F P  MGGR
Sbjct:   22 SIDGLLSPRECAAWIRYGEGQGFERSFHRQTSEMAHRDNGRITLHSADVAAAVFARVGKFVPANMGGR 89          
BLAST of mRNA_D-mesarthrocarpus_Contig10882.1.1 vs. uniprot
Match: D7FQ80_ECTSI (P4Hc domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ80_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 1.570e-20
Identity = 45/70 (64.29%), Postives = 52/70 (74.29%), Query Frame = 1
Query:    1 IRSIKDFLSPSECRAWIRFGEEQGFLTSFHRATSEMAHRDNGRISIDSPWVAAALWSRMAPFFPPVMGGR 210
            I SI   LSP EC AWIR+GE QGF  SFHR TSEMAHRDNGRI++ S  VAAA+++R+  F P  MGGR
Sbjct:   56 ILSIDGLLSPRECAAWIRYGEGQGFERSFHRQTSEMAHRDNGRITLHSADVAAAVFARVGKFVPANMGGR 125          
BLAST of mRNA_D-mesarthrocarpus_Contig10882.1.1 vs. uniprot
Match: A0A7S2UX31_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UX31_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 5.360e-19
Identity = 40/73 (54.79%), Postives = 46/73 (63.01%), Query Frame = 1
Query:    1 IRSIKDFLSPSECRAWIRFGEEQGFLTSFHRATSEMAHRDNGRISIDSPWVAAALWSRMAPFFPPVMGGRYVS 219
            I  I +F +P ECRAWIRFGE  GF   FH AT E AHRDNGR+  +S  VA  LW R+  F P  MGG+  S
Sbjct:  100 IFGIPNFFTPQECRAWIRFGENNGFELQFHNATQEYAHRDNGRLQWESEAVAGVLWERLRAFVPTHMGGKEAS 172          
BLAST of mRNA_D-mesarthrocarpus_Contig10882.1.1 vs. uniprot
Match: A0A836CHZ3_9STRA (Fe2OG dioxygenase domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHZ3_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 6.050e-19
Identity = 36/61 (59.02%), Postives = 46/61 (75.41%), Query Frame = 1
Query:   10 IKDFLSPSECRAWIRFGEEQGFLTSFHRATSEMAHRDNGRISIDSPWVAAALWSRMAPFFP 192
            I  FL+P+EC AWI +GEE GF  +FH AT E+AHRDNGR+ + SP +AAA+W R+ PF P
Sbjct:    9 IDGFLTPAECGAWIDWGEETGFENTFHTATREIAHRDNGRLQVHSPDIAAAIWQRIQPFVP 69          
BLAST of mRNA_D-mesarthrocarpus_Contig10882.1.1 vs. uniprot
Match: R1DNF6_EMIHU (P4Hc domain-containing protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DNF6_EMIHU)

HSP 1 Score: 77.4 bits (189), Expect = 9.260e-16
Identity = 34/62 (54.84%), Postives = 43/62 (69.35%), Query Frame = 1
Query:    7 SIKDFLSPSECRAWIRFGEEQGFLTSFHRATSEMAHRDNGRISIDSPWVAAALWSRMAPFFP 192
            SI  FLSP+EC AW+ +GE  GF    H  T  +AHRDNGR+++ S  +AAALWSR+AP  P
Sbjct:   16 SIPAFLSPAECAAWVSWGETSGFEQEKHAQTRWIAHRDNGRLAVQSESIAAALWSRLAPLMP 77          
BLAST of mRNA_D-mesarthrocarpus_Contig10882.1.1 vs. uniprot
Match: A0A7S3VW03_EMIHU (Hypothetical protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3VW03_EMIHU)

HSP 1 Score: 77.4 bits (189), Expect = 1.530e-15
Identity = 34/62 (54.84%), Postives = 43/62 (69.35%), Query Frame = 1
Query:    7 SIKDFLSPSECRAWIRFGEEQGFLTSFHRATSEMAHRDNGRISIDSPWVAAALWSRMAPFFP 192
            SI  FLSP+EC AW+ +GE  GF    H  T  +AHRDNGR+++ S  +AAALWSR+AP  P
Sbjct:   16 SIPAFLSPAECAAWVSWGETSGFEQEKHAQTRWIAHRDNGRLAVQSESIAAALWSRLAPLMP 77          
BLAST of mRNA_D-mesarthrocarpus_Contig10882.1.1 vs. uniprot
Match: A0A0L0G5Z2_9EUKA (Fe2OG dioxygenase domain-containing protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0G5Z2_9EUKA)

HSP 1 Score: 75.9 bits (185), Expect = 6.210e-15
Identity = 36/73 (49.32%), Postives = 47/73 (64.38%), Query Frame = 1
Query:    1 IRSIKDFLSPSECRAWIRFGEEQGFLTSFHRATSEMAHRDNGRISIDSPWVAAALWSRMAPFFPPVMGGRYVS 219
            I ++ +FLS SEC AWI FGE +GF  SF +   E AHRDNGRISI+S  +A A + R+ P  P   G R ++
Sbjct:   57 IYTLTNFLSDSECAAWIEFGEREGFEASFQKQNRECAHRDNGRISIESESIAQAFFLRLNPSLPEKYGTRQLN 129          
BLAST of mRNA_D-mesarthrocarpus_Contig10882.1.1 vs. uniprot
Match: A0A7S1TBQ7_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TBQ7_9RHOD)

HSP 1 Score: 74.7 bits (182), Expect = 6.420e-15
Identity = 35/70 (50.00%), Postives = 45/70 (64.29%), Query Frame = 1
Query:    1 IRSIKDFLSPSECRAWIRFGEEQGFLTSFHRATSEMAHRDNGRISIDSPWVAAALWSRMAPFFPPVMGGR 210
            I  + DFLS +E  AWI FGE  GF   FHRA+ E+AHRDNGRI + +P +AAAL+ R+    P  +  R
Sbjct:   87 IHEVPDFLSKAETEAWIHFGETHGFDRCFHRASREVAHRDNGRIELVNPEIAAALFQRLRLLIPATVHQR 156          
BLAST of mRNA_D-mesarthrocarpus_Contig10882.1.1 vs. uniprot
Match: A0A024UM13_9STRA (Fe2OG dioxygenase domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UM13_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 2.560e-10
Identity = 30/65 (46.15%), Postives = 39/65 (60.00%), Query Frame = 1
Query:    1 IRSIKDFLSPSECRAWIRFGEEQGFLTSFHRATSEMAHRDNGRISIDSPWVAAALWSRMAPFFPP 195
            I+ ++ F++ SEC   I F    GF   FH  TSE A RDN R+ + SP +AA LW R+ PF PP
Sbjct:   59 IQRLRYFMTKSECHDAIAFATSIGFTHVFHSQTSEYAFRDNDRLLLRSPQLAAQLWERLHPFLPP 123          
BLAST of mRNA_D-mesarthrocarpus_Contig10882.1.1 vs. uniprot
Match: A0A2R5GIH8_9STRA (Tetraacyldisaccharide 4'-kinase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GIH8_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 1.640e-9
Identity = 29/70 (41.43%), Postives = 44/70 (62.86%), Query Frame = 1
Query:    1 IRSIKDFLSPSECRAWIRFGEEQGFLTSFHRATSEMAHRDNGRISIDSPWVAAALWSRMAPFFPPVMGGR 210
            I ++   LSP EC AWI +GE++GF ++   +++  A RDNGRIS+  P VAA ++ R+    P  + GR
Sbjct:  119 IFAVPRCLSPEECAAWIAWGEKRGFASAKQASSAGFAFRDNGRISVHDPEVAAIIFQRLRGVVPAEIDGR 188          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10882.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A6H5KGN2_9PHAE5.440e-2164.71P4Hc domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FQ80_ECTSI1.570e-2064.29P4Hc domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A7S2UX31_9STRA5.360e-1954.79Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A836CHZ3_9STRA6.050e-1959.02Fe2OG dioxygenase domain-containing protein (Fragm... [more]
R1DNF6_EMIHU9.260e-1654.84P4Hc domain-containing protein n=2 Tax=Emiliania h... [more]
A0A7S3VW03_EMIHU1.530e-1554.84Hypothetical protein (Fragment) n=1 Tax=Emiliania ... [more]
A0A0L0G5Z2_9EUKA6.210e-1549.32Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
A0A7S1TBQ7_9RHOD6.420e-1550.00Hypothetical protein (Fragment) n=1 Tax=Compsopogo... [more]
A0A024UM13_9STRA2.560e-1046.15Fe2OG dioxygenase domain-containing protein n=2 Ta... [more]
A0A2R5GIH8_9STRA1.640e-941.43Tetraacyldisaccharide 4'-kinase n=1 Tax=Hondaea fe... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10882contigD-mesarthrocarpus_Contig10882:178..396 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FQ80
PFAMs2OG-FeII_Oxy_3
Model size219
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.57e-21
EggNOG OGs28IQ0@1|root,2QR14@2759|Eukaryota
DescriptionProlyl 4-hydroxylase alpha subunit homologues.
Cds size219
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789219.7389295-CDS-D-mesarthrocarpus_Contig10882:177..3961680789219.7389295-CDS-D-mesarthrocarpus_Contig10882:177..396Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10882 178..396 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10882.1.1prot_D-mesarthrocarpus_Contig10882.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10882 178..396 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10882.1.1

>prot_D-mesarthrocarpus_Contig10882.1.1 ID=prot_D-mesarthrocarpus_Contig10882.1.1|Name=mRNA_D-mesarthrocarpus_Contig10882.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=73bp
IRSIKDFLSPSECRAWIRFGEEQGFLTSFHRATSEMAHRDNGRISIDSPW
VAAALWSRMAPFFPPVMGGRYVS
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mRNA from alignment at D-mesarthrocarpus_Contig10882:178..396-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10882.1.1 ID=mRNA_D-mesarthrocarpus_Contig10882.1.1|Name=mRNA_D-mesarthrocarpus_Contig10882.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=219bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10882:178..396- (Discosporangium mesarthrocarpum MT17_79)
ATTCGCAGCATCAAGGATTTCCTAAGTCCCAGTGAGTGCCGAGCGTGGAT ACGTTTTGGTGAGGAACAAGGCTTCTTGACAAGCTTCCACCGTGCTACGT CTGAAATGGCGCACCGAGATAATGGACGAATAAGCATTGACAGCCCCTGG GTTGCAGCAGCATTATGGTCGAGGATGGCCCCATTTTTCCCTCCAGTCAT GGGCGGACGGTATGTTTCT
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10882:178..396-

>mRNA_D-mesarthrocarpus_Contig10882.1.1 ID=mRNA_D-mesarthrocarpus_Contig10882.1.1|Name=mRNA_D-mesarthrocarpus_Contig10882.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=219bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10882:178..396- (Discosporangium mesarthrocarpum MT17_79)
ATTCGCAGCATCAAGGATTTCCTAAGTCCCAGTGAGTGCCGAGCGTGGAT
ACGTTTTGGTGAGGAACAAGGCTTCTTGACAAGCTTCCACCGTGCTACGT
CTGAAATGGCGCACCGAGATAATGGACGAATAAGCATTGACAGCCCCTGG
GTTGCAGCAGCATTATGGTCGAGGATGGCCCCATTTTTCCCTCCAGTCAT
GGGCGGACGGTATGTTTCT
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