mRNA_D-mesarthrocarpus_Contig10878.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10878.2.1
Unique NamemRNA_D-mesarthrocarpus_Contig10878.2.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10878.2.1 vs. uniprot
Match: D8LNV3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNV3_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 3.990e-23
Identity = 53/102 (51.96%), Postives = 71/102 (69.61%), Query Frame = 1 
Query:  118 LANVLAPRIEIGQQALDEAFSAKDAKRVIRIIERATNRQSSLGSSGGGGIDDVQKVDINAPDKNGLRPIHRAACAGMADVVQRLLEAGVHVDTLGAEANTAL 423
            L+NVLAP++E+GQ+AL +A  A+D+KR  RII+R +    +    G      V + D+NA D+ GLRPIH AA +GM++ V  LL AGV VDT+GAEANTAL
Sbjct:    5 LSNVLAPKLEVGQEALFDALRARDSKRATRIIKRVSRESYARRGGGSTSGQRVAEADLNATDRRGLRPIHLAAMSGMSESVAALLNAGVPVDTMGAEANTAL 106
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BLAST of mRNA_D-mesarthrocarpus_Contig10878.2.1 vs. uniprot
Match: A0A1Y1Y921_9FUNG (Dilute domain-containing protein n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1Y921_9FUNG)

HSP 1 Score: 67.0 bits (162), Expect = 1.090e-9
Identity = 43/123 (34.96%), Postives = 61/123 (49.59%), Query Frame = 1 
Query:  163 LDEAFSAKDAKRVIRIIERATNRQSSLGSSGGGGIDDVQKVDINAPDKNGLRPIHRAACAGMADVVQRLLEAGVHVDTLGAEANTALHLAVFHEQDGVVAVLVEGGASPRQENARGKTAVDLA 531
            L  A S  D+KRV +++E A +                  VDIN  D++G  P+  +AC G  +V   LLEAG   D       TAL  A  +  DG+VA LV+ GAS   ++ +G+T +D A
Sbjct:  155 LRRASSNGDSKRVSKLLEIAKDY-----------------VDINGQDEDGTTPLIHSACWGYLEVAYALLEAGADPDAQDKSGWTALMWATNNHHDGIVATLVDHGASTASKSTKGRTVLDFA 260
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BLAST of mRNA_D-mesarthrocarpus_Contig10878.2.1 vs. uniprot
Match: A0A1Y2GVM7_9FUNG (Dilute domain-containing protein n=1 Tax=Lobosporangium transversale TaxID=64571 RepID=A0A1Y2GVM7_9FUNG)

HSP 1 Score: 60.1 bits (144), Expect = 2.610e-7
Identity = 32/82 (39.02%), Postives = 46/82 (56.10%), Query Frame = 1 
Query:  283 VDINAPDKNGLRPIHRAACAGMADVVQRLLEAGVHVDTLGAEANTALHLAVFHEQDGVVAVLVEGGASPRQENARGKTAVDL 528
            VDIN  +++G  P+  A+C G    V  LL AG  VD       TAL  A  ++ +G+V +L+E GASP  + A+G+T  D 
Sbjct:   87 VDINTHEEDGSTPLIYASCFGQTAAVSMLLNAGTQVDACDKFGWTALVWATNNKHEGIVRLLLEHGASPSAQTAKGRTVADF 168
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BLAST of mRNA_D-mesarthrocarpus_Contig10878.2.1 vs. uniprot
Match: A0A6H5KSL0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSL0_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 5.750e-7
Identity = 28/42 (66.67%), Postives = 35/42 (83.33%), Query Frame = 1 
Query:  340 AGMADVVQRLLEAGVHVDTLGAEANTALHLAVFHEQDGVVAV 465
            +GM++ V  LL AGV VDT+GAEANTALHLA +H Q+GV+AV
Sbjct:    2 SGMSESVAALLNAGVPVDTMGAEANTALHLAAYHGQEGVIAV 43
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BLAST of mRNA_D-mesarthrocarpus_Contig10878.2.1 vs. uniprot
Match: A0A1I4DZU2_9RHOB (Ankyrin repeat n=1 Tax=Loktanella salsilacus TaxID=195913 RepID=A0A1I4DZU2_9RHOB)

HSP 1 Score: 55.8 bits (133), Expect = 6.040e-6
Identity = 32/65 (49.23%), Postives = 40/65 (61.54%), Query Frame = 1 
Query:  322 IHRAACAGMADVVQRLLEAGVHVDTLGAEANTALHLAVFHEQDGVVAVLVEGGASPRQENARGKT 516
            IH AA  G  D+ Q LLEAG  VD LG  ++TAL LA        V +L+E GA P +ENA+G+T
Sbjct:  276 IHLAARYGRTDLCQVLLEAGASVDQLGDSSHTALMLACEENHVETVQLLLEHGADPHRENAKGRT 340
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BLAST of mRNA_D-mesarthrocarpus_Contig10878.2.1 vs. uniprot
Match: A0A3M7KYQ0_AUXPR (Uncharacterized protein n=1 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A3M7KYQ0_AUXPR)

HSP 1 Score: 53.5 bits (127), Expect = 3.260e-5
Identity = 31/77 (40.26%), Postives = 47/77 (61.04%), Query Frame = 1 
Query:  307 NGLRPIHRAACAGMADVVQRLLEAG--VHVDTLGAEANTALHLAVFHEQDGVVAVLVEGGASPRQENARGKTAVDLA 531
            +G+ P+  A   G     + L+ AG  VH+     + N+ALH AV  +QD +V VL++ GA+P  ENA+G TA+D+A
Sbjct:   51 SGVTPLIAATQRGNLQCAEVLIAAGADVHIVCPSLDGNSALHEAVSRKQDSLVEVLLQAGANPCVENAKGYTAMDVA 127
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BLAST of mRNA_D-mesarthrocarpus_Contig10878.2.1 vs. uniprot
Match: A0A087SDX0_AUXPR (Putative E3 ubiquitin-protein ligase XBOS34 n=1 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A087SDX0_AUXPR)

HSP 1 Score: 53.5 bits (127), Expect = 4.150e-5
Identity = 31/77 (40.26%), Postives = 47/77 (61.04%), Query Frame = 1 
Query:  307 NGLRPIHRAACAGMADVVQRLLEAG--VHVDTLGAEANTALHLAVFHEQDGVVAVLVEGGASPRQENARGKTAVDLA 531
            +G+ P+  A   G     + L+ AG  VH+     + N+ALH AV  +QD +V VL++ GA+P  ENA+G TA+D+A
Sbjct:   51 SGVTPLIAATQRGNLQCAEVLIAAGADVHIVCPSLDGNSALHEAVSRKQDSLVEVLLQAGANPCVENAKGYTAMDVA 127
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BLAST of mRNA_D-mesarthrocarpus_Contig10878.2.1 vs. uniprot
Match: A0A1D1ZZD3_AUXPR (Uncharacterized protein (Fragment) n=2 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A1D1ZZD3_AUXPR)

HSP 1 Score: 53.5 bits (127), Expect = 4.480e-5
Identity = 31/77 (40.26%), Postives = 47/77 (61.04%), Query Frame = 1 
Query:  307 NGLRPIHRAACAGMADVVQRLLEAG--VHVDTLGAEANTALHLAVFHEQDGVVAVLVEGGASPRQENARGKTAVDLA 531
            +G+ P+  A   G     + L+ AG  VH+     + N+ALH AV  +QD +V VL++ GA+P  ENA+G TA+D+A
Sbjct:  106 SGVTPLIAATQRGNLQCAEVLIAAGADVHIVCPSLDGNSALHEAVSRKQDSLVEVLLQAGANPCVENAKGYTAMDVA 182
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BLAST of mRNA_D-mesarthrocarpus_Contig10878.2.1 vs. uniprot
Match: A0A7S0XYB4_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0XYB4_HEMAN)

HSP 1 Score: 52.4 bits (124), Expect = 6.210e-5
Identity = 30/74 (40.54%), Postives = 41/74 (55.41%), Query Frame = 1 
Query:  310 GLRPIHRAACAGMADVVQRLLEAGVHVDTLGAEANTALHLAVFHEQDGVVAVLVEGGASPRQENARGKTAVDLA 531
            G   +H AA  G    V+ +LEA   +D++ AE NT LHLA+  ++  VV VLV+ GA     N  G  A +LA
Sbjct:  156 GPSALHLAAMFGHVSAVEEILEADAKIDSVTAEGNTPLHLAIISKRQDVVDVLVKKGADVEIANEVGAPATELA 229
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10878.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D8LNV3_ECTSI3.990e-2351.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A1Y1Y921_9FUNG1.090e-934.96Dilute domain-containing protein n=1 Tax=Basidiobo... [more]
A0A1Y2GVM7_9FUNG2.610e-739.02Dilute domain-containing protein n=1 Tax=Lobospora... [more]
A0A6H5KSL0_9PHAE5.750e-766.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1I4DZU2_9RHOB6.040e-649.23Ankyrin repeat n=1 Tax=Loktanella salsilacus TaxID... [more]
A0A3M7KYQ0_AUXPR3.260e-540.26Uncharacterized protein n=1 Tax=Auxenochlorella pr... [more]
A0A087SDX0_AUXPR4.150e-540.26Putative E3 ubiquitin-protein ligase XBOS34 n=1 Ta... [more]
A0A1D1ZZD3_AUXPR4.480e-540.26Uncharacterized protein (Fragment) n=2 Tax=Auxenoc... [more]
A0A7S0XYB4_HEMAN6.210e-540.54Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10878contigD-mesarthrocarpus_Contig10878:1643..3270 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LNV3
PFAMsAnk_2,Ank_4,Ank_5,Dev_Cell_Death
Model size547
Max annot lvl2759|Eukaryota
KEGG koko:K16726
Hectar predicted targeting categoryother localisation
Exons3
Evalue2.87e-24
EggNOG OGsCOG0666@1|root,KOG4177@2759|Eukaryota
Descriptionspectrin binding
Cds size441
COG categoryI
BRITEko00000,ko03036
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789219.5084474-UTR-D-mesarthrocarpus_Contig10878:1642..17471680789219.5084474-UTR-D-mesarthrocarpus_Contig10878:1642..1747Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig10878 1643..1747 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789219.5217772-CDS-D-mesarthrocarpus_Contig10878:1747..19241680789219.5217772-CDS-D-mesarthrocarpus_Contig10878:1747..1924Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10878 1748..1924 +
1680789219.5357022-CDS-D-mesarthrocarpus_Contig10878:2406..26021680789219.5357022-CDS-D-mesarthrocarpus_Contig10878:2406..2602Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10878 2407..2602 +
1680789219.5509167-CDS-D-mesarthrocarpus_Contig10878:3202..32701680789219.5509167-CDS-D-mesarthrocarpus_Contig10878:3202..3270Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10878 3203..3270 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10878.2.1prot_D-mesarthrocarpus_Contig10878.2.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10878 1748..3270 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10878.2.1

>prot_D-mesarthrocarpus_Contig10878.2.1 ID=prot_D-mesarthrocarpus_Contig10878.2.1|Name=mRNA_D-mesarthrocarpus_Contig10878.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=147bp
MIGALANVLAPRIEIGQQALDEAFSAKDAKRVIRIIERATNRQSSLGSSG
GGGIDDVQKVDINAPDKNGLRPIHRAACAGMADVVQRLLEAGVHVDTLGA
EANTALHLAVFHEQDGVVAVLVEGGASPRQENARGKTAVDLARTETS
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mRNA from alignment at D-mesarthrocarpus_Contig10878:1643..3270+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10878.2.1 ID=mRNA_D-mesarthrocarpus_Contig10878.2.1|Name=mRNA_D-mesarthrocarpus_Contig10878.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1628bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10878:1643..3270+ (Discosporangium mesarthrocarpum MT17_79)
TCAGGTTGATCACAGGTCTGCCCCTGTGAGGACTTTCAGACCTGATTCAC
GATAGAAGAGTGCTCGGGGGAGGGTTGGGAGTCCTCTTGCTGCGAGAGAT
AGACAATGATCGGGGCCCTAGCCAATGTTCTGGCTCCTCGGATTGAGATA
GGGCAACAAGCCCTGGATGAGGCCTTCAGCGCAAAGGATGCGAAACGAGT
GATTCGAATAATCGAACGTGCGACAAACAGACAATCCAGTTTGGGGAGCA
GCGGGGGGGGGGGAATCGACGATGTGCAGAAGGTGGGTGGAAAGCCCTGC
TGTGGTAAAAGCAGAGATGGGTCGAAGCCGGGGAAGGTGCGAACAAATCG
CTGACAAGATGGATCTGGAGAGGTCCCGAAAAGGTCCCCAGCTAACACTG
ACGCTTGTGGATAGGCTGTCGAAGTTGTTTGATTAGTAAGAAAGATACGG
GCGCCCCCCTTCTGGTACTACAATTCCAGCTTTAAACTTTTTGTCAGCTG
GAGCTGATAATCGTGTAGTCATCGAGGCGTTCAAGAGTGTCCATCCCCTC
GCACCCAATTGCCACACTCCCACCTCCGACCCAGTTGCCACGCACTAGAC
ACCCAGAGCGCCGAGCGGCTCCTTTTCCCTCCCGCCTTCTATGCCCAACT
TATACAAGCCTCATCAGAAAGGCCTTTAAAGATCGAATAACGGCTCACTC
GCAAATATACACCTCAGCCTCGATAATCTACCTAATCAACTCCGGTTATC
GCTCGACCGCGCAGGTCGACATCAATGCGCCCGACAAAAATGGGCTCCGC
CCGATCCACCGGGCCGCGTGCGCGGGAATGGCTGATGTGGTCCAAAGATT
GCTCGAGGCGGGGGTCCACGTTGACACCTTGGGGGCGGAGGCGAACACAG
CCCTTCACCTTGCGGTGTTCCACGAGCAGGATGGTGTCGTCGCTGTGCTT
GTGGAAGGAGGTAAAGTAGGGGATGGGTTTCTGGACCTGTATCTCGAACC
CTATGTTCATCAAGTTGAATCTATTGAGGCAATATAGAGTGAAGGCATGG
CCCTCAATGTTGGAATGGTCACTGACACGCTGACTGGCATCATTCTCACG
CAACCAACACCTGTTGTGGAGCAAACGCAACGTCAAGCCTCTTCCGCTGG
CATATTAGGACGCGTTACGTACTTGATAAGGCATTTTTCAAAGCCTGACT
TGTTGCTTTGTAGACCTGCAAGTGCGTGACCCCAAGACAGAACAAATACC
TCTTCCCTACCCGCTAGTCAACCTTTTCCTGCATGATCCGAACGTTTCGA
GAATGCAAGAATGAGCGATTGATGATTAATGATCGTGGCCGATCTCTGTG
CTGCGTAGCTCTGCACACCCAAACCTGTGTGTGTGTGTGTGTGTTAACAC
AGTGTTAATTGTGTGAATAGTATGTTCAACCTGTACGTGCGTATCCTACA
CGTGACGGACCCATTTGTTTTGTTTTCTGTTTTCTGTTTTTTATTTTTTG
TTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGCTCTGTTTTC
TTGGGGCCAGGGGCCAGCCCCCGCCAAGAGAATGCGAGGGGGAAGACCGC
GGTGGACCTGGCCAGGACGGAGACTTCA
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10878:1643..3270+

>mRNA_D-mesarthrocarpus_Contig10878.2.1 ID=mRNA_D-mesarthrocarpus_Contig10878.2.1|Name=mRNA_D-mesarthrocarpus_Contig10878.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=441bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10878:1643..3270+ (Discosporangium mesarthrocarpum MT17_79)
ATGATCGGGGCCCTAGCCAATGTTCTGGCTCCTCGGATTGAGATAGGGCA
ACAAGCCCTGGATGAGGCCTTCAGCGCAAAGGATGCGAAACGAGTGATTC
GAATAATCGAACGTGCGACAAACAGACAATCCAGTTTGGGGAGCAGCGGG
GGGGGGGGAATCGACGATGTGCAGAAGGTCGACATCAATGCGCCCGACAA
AAATGGGCTCCGCCCGATCCACCGGGCCGCGTGCGCGGGAATGGCTGATG
TGGTCCAAAGATTGCTCGAGGCGGGGGTCCACGTTGACACCTTGGGGGCG
GAGGCGAACACAGCCCTTCACCTTGCGGTGTTCCACGAGCAGGATGGTGT
CGTCGCTGTGCTTGTGGAAGGAGGGGCCAGCCCCCGCCAAGAGAATGCGA
GGGGGAAGACCGCGGTGGACCTGGCCAGGACGGAGACTTCA
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