mRNA_D-mesarthrocarpus_Contig10841.3.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10841.3.1
Unique NamemRNA_D-mesarthrocarpus_Contig10841.3.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10841.3.1 vs. uniprot
Match: A0A6H5KL69_9PHAE (ATP-cone domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL69_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 2.250e-37
Identity = 61/74 (82.43%), Postives = 66/74 (89.19%), Query Frame = 1 
Query:    7 MFVFKRDGRKESVAFDKITRRISKLCYGLDPKYVDPVIISQKVIQGVYPGVTTGELDELAAQTAAYMATQHREH 228
            MFV KRDGRKE+V+FDKIT RIS LCYGLDP YV+P +I+QKVI GVYPGVTT ELDELAAQTAAY ATQHREH
Sbjct:    1 MFVIKRDGRKETVSFDKITARISHLCYGLDPTYVEPTLIAQKVISGVYPGVTTSELDELAAQTAAYQATQHREH 74
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BLAST of mRNA_D-mesarthrocarpus_Contig10841.3.1 vs. uniprot
Match: D7FZT8_ECTSI (Ribonucleoside-diphosphate reductase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZT8_ECTSI)

HSP 1 Score: 124 bits (310), Expect = 3.220e-31
Identity = 59/71 (83.10%), Postives = 64/71 (90.14%), Query Frame = 1 
Query:    7 MFVFKRDGRKESVAFDKITRRISKLCYGLDPKYVDPVIISQKVIQGVYPGVTTGELDELAAQTAAYMATQH 219
            MFV KRDGRKE+V+FDKIT RIS LCYGLDPKYV+P +I+QKVI GVYPGVTT ELDELAAQTAAY ATQH
Sbjct:    1 MFVIKRDGRKETVSFDKITARISHLCYGLDPKYVEPTLIAQKVISGVYPGVTTSELDELAAQTAAYQATQH 71
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BLAST of mRNA_D-mesarthrocarpus_Contig10841.3.1 vs. uniprot
Match: A0A835Z5N1_9STRA (Ribonucleoside-diphosphate reductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5N1_9STRA)

HSP 1 Score: 123 bits (309), Expect = 4.390e-31
Identity = 59/71 (83.10%), Postives = 64/71 (90.14%), Query Frame = 1 
Query:    7 MFVFKRDGRKESVAFDKITRRISKLCYGLDPKYVDPVIISQKVIQGVYPGVTTGELDELAAQTAAYMATQH 219
            M+V KRDGR E+V FDKIT RI KLCYGLD +YVDP+I+SQKVIQGVYPGVTT ELDELAAQTAAYMATQH
Sbjct:    1 MYVVKRDGRSEAVYFDKITSRIKKLCYGLDDRYVDPIILSQKVIQGVYPGVTTSELDELAAQTAAYMATQH 71
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BLAST of mRNA_D-mesarthrocarpus_Contig10841.3.1 vs. uniprot
Match: B7FPB6_PHATC (Ribonucleoside-diphosphate reductase n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FPB6_PHATC)

HSP 1 Score: 122 bits (305), Expect = 1.530e-30
Identity = 59/76 (77.63%), Postives = 68/76 (89.47%), Query Frame = 1 
Query:    1 LNMFVFKRDGRKESVAFDKITRRISKLCYGLDPKYVDPVIISQKVIQGVYPGVTTGELDELAAQTAAYMATQHREH 228
            ++M+V KR+GR+ESV FDKIT R+SKLCYGLD K+VDPVIISQKVIQGVYPGVTT ELDELAAQTAA  ATQH ++
Sbjct:    1 MSMYVLKRNGRRESVHFDKITSRVSKLCYGLDAKHVDPVIISQKVIQGVYPGVTTSELDELAAQTAASFATQHPDY 76
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BLAST of mRNA_D-mesarthrocarpus_Contig10841.3.1 vs. uniprot
Match: A0A7S2S2A3_9STRA (Ribonucleoside-diphosphate reductase (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S2A3_9STRA)

HSP 1 Score: 117 bits (292), Expect = 4.790e-30
Identity = 59/72 (81.94%), Postives = 63/72 (87.50%), Query Frame = 1 
Query:    4 NMFVFKRDGRKESVAFDKITRRISKLCYGLDPKYVDPVIISQKVIQGVYPGVTTGELDELAAQTAAYMATQH 219
            +M+V KRDGR+ESV FDKIT RISKLCYGLD K+VDPV ISQKVIQGVYPGVTT ELDELAAQTAA  AT H
Sbjct:    3 SMYVQKRDGRRESVYFDKITSRISKLCYGLDVKFVDPVAISQKVIQGVYPGVTTTELDELAAQTAASFATHH 74
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BLAST of mRNA_D-mesarthrocarpus_Contig10841.3.1 vs. uniprot
Match: A0A1Z5JI96_FISSO (Ribonucleoside-diphosphate reductase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JI96_FISSO)

HSP 1 Score: 120 bits (300), Expect = 7.250e-30
Identity = 58/74 (78.38%), Postives = 67/74 (90.54%), Query Frame = 1 
Query:    7 MFVFKRDGRKESVAFDKITRRISKLCYGLDPKYVDPVIISQKVIQGVYPGVTTGELDELAAQTAAYMATQHREH 228
            M+V KR+G++ESV FDKIT R+SKLCYGLD K+VDPV+ISQKVIQGVYPGVTT ELDELAAQTAA MATQH ++
Sbjct:    1 MYVLKRNGKRESVHFDKITSRVSKLCYGLDAKHVDPVVISQKVIQGVYPGVTTCELDELAAQTAAAMATQHPDY 74
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BLAST of mRNA_D-mesarthrocarpus_Contig10841.3.1 vs. uniprot
Match: A0A7S4M9A0_9STRA (Ribonucleoside-diphosphate reductase n=2 Tax=Odontellaceae TaxID=2749909 RepID=A0A7S4M9A0_9STRA)

HSP 1 Score: 119 bits (299), Expect = 9.930e-30
Identity = 60/73 (82.19%), Postives = 66/73 (90.41%), Query Frame = 1 
Query:    1 LNMFVFKRDGRKESVAFDKITRRISKLCYGLDPKYVDPVIISQKVIQGVYPGVTTGELDELAAQTAAYMATQH 219
            ++MFV KR+GR+ESV FDKIT RISKLCYGLD K+VDPVIISQKVIQGVYPGVTT ELDELAA+TAA  ATQH
Sbjct:    1 MSMFVVKRNGRRESVYFDKITSRISKLCYGLDNKHVDPVIISQKVIQGVYPGVTTVELDELAAETAASFATQH 73
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BLAST of mRNA_D-mesarthrocarpus_Contig10841.3.1 vs. uniprot
Match: A0A6S9A967_9STRA (Ribonucleoside-diphosphate reductase n=7 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S9A967_9STRA)

HSP 1 Score: 118 bits (295), Expect = 3.440e-29
Identity = 56/76 (73.68%), Postives = 66/76 (86.84%), Query Frame = 1 
Query:    1 LNMFVFKRDGRKESVAFDKITRRISKLCYGLDPKYVDPVIISQKVIQGVYPGVTTGELDELAAQTAAYMATQHREH 228
            ++M+V KR G+ ESV FDKIT R+ KLCYGLDPKYV+PV+I+QKVIQGVYPGVTT ELDELAAQTAA  ATQH ++
Sbjct:    1 MSMYVVKRSGKSESVHFDKITSRVRKLCYGLDPKYVEPVVIAQKVIQGVYPGVTTVELDELAAQTAASFATQHPDY 76
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BLAST of mRNA_D-mesarthrocarpus_Contig10841.3.1 vs. uniprot
Match: A0A482SL51_9ARCH (ATP-cone domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SL51_9ARCH)

HSP 1 Score: 109 bits (273), Expect = 3.450e-29
Identity = 53/71 (74.65%), Postives = 61/71 (85.92%), Query Frame = 1 
Query:    7 MFVFKRDGRKESVAFDKITRRISKLCYGLDPKYVDPVIISQKVIQGVYPGVTTGELDELAAQTAAYMATQH 219
            M+V KRDGR+E+V FDKIT RI+KLCYGLDP +VD  IISQKV+ G+YPGVTT ELDELAAQTAA  AT+H
Sbjct:    1 MYVIKRDGRRENVHFDKITSRINKLCYGLDPNHVDATIISQKVVPGLYPGVTTFELDELAAQTAASCATRH 71
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BLAST of mRNA_D-mesarthrocarpus_Contig10841.3.1 vs. uniprot
Match: A0A7S2U5U6_9STRA (Ribonucleoside-diphosphate reductase n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U5U6_9STRA)

HSP 1 Score: 117 bits (292), Expect = 8.750e-29
Identity = 56/76 (73.68%), Postives = 66/76 (86.84%), Query Frame = 1 
Query:    1 LNMFVFKRDGRKESVAFDKITRRISKLCYGLDPKYVDPVIISQKVIQGVYPGVTTGELDELAAQTAAYMATQHREH 228
            ++M+V KR+G+ +SV FDKIT RI KLCYGL PKYVDPV+ISQKVIQGVYPGVTT ELD+LAAQTAA  ATQH ++
Sbjct:    1 MSMYVVKRNGKTQSVLFDKITSRIGKLCYGLHPKYVDPVVISQKVIQGVYPGVTTVELDDLAAQTAASFATQHPDY 76
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10841.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KL69_9PHAE2.250e-3782.43ATP-cone domain-containing protein n=1 Tax=Ectocar... [more]
D7FZT8_ECTSI3.220e-3183.10Ribonucleoside-diphosphate reductase n=1 Tax=Ectoc... [more]
A0A835Z5N1_9STRA4.390e-3183.10Ribonucleoside-diphosphate reductase n=1 Tax=Tribo... [more]
B7FPB6_PHATC1.530e-3077.63Ribonucleoside-diphosphate reductase n=3 Tax=Phaeo... [more]
A0A7S2S2A3_9STRA4.790e-3081.94Ribonucleoside-diphosphate reductase (Fragment) n=... [more]
A0A1Z5JI96_FISSO7.250e-3078.38Ribonucleoside-diphosphate reductase n=2 Tax=Fistu... [more]
A0A7S4M9A0_9STRA9.930e-3082.19Ribonucleoside-diphosphate reductase n=2 Tax=Odont... [more]
A0A6S9A967_9STRA3.440e-2973.68Ribonucleoside-diphosphate reductase n=7 Tax=Dityl... [more]
A0A482SL51_9ARCH3.450e-2974.65ATP-cone domain-containing protein n=1 Tax=archaeo... [more]
A0A7S2U5U6_9STRA8.750e-2973.68Ribonucleoside-diphosphate reductase n=1 Tax=Atthe... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10841contigD-mesarthrocarpus_Contig10841:2858..3845 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FZT8
Preferred nameRNR1
PFAMsATP-cone,Ribonuc_red_lgC,Ribonuc_red_lgN
Model size231
Max annot lvl2759|Eukaryota
KEGG rclassRC00613,RC01003
KEGG koko:K10807
KEGG ReactionR02017,R02019,R02024,R08363,R08364,R11893
KEGG Pathwayko00230,ko00240,ko00480,ko00983,ko01100,map00230,map00240,map00480,map00983,map01100
KEGG ModuleM00053
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0003674,GO:0003824,GO:0004550,GO:0004748,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005829,GO:0005971,GO:0006139,GO:0006165,GO:0006213,GO:0006220,GO:0006221,GO:0006235,GO:0006240,GO:0006259,GO:0006260,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009116,GO:0009117,GO:0009119,GO:0009132,GO:0009133,GO:0009138,GO:0009139,GO:0009141,GO:0009142,GO:0009147,GO:0009148,GO:0009165,GO:0009185,GO:0009186,GO:0009189,GO:0009193,GO:0009196,GO:0009197,GO:0009200,GO:0009202,GO:0009211,GO:0009212,GO:0009218,GO:0009219,GO:0009221,GO:0009259,GO:0009262,GO:0009263,GO:0009265,GO:0009394,GO:0009987,GO:0010035,GO:0010038,GO:0016301,GO:0016310,GO:0016491,GO:0016725,GO:0016728,GO:0016740,GO:0016772,GO:0016776,GO:0017076,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019692,GO:0019693,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0034641,GO:0034645,GO:0034654,GO:0035639,GO:0036094,GO:0042221,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0046062,GO:0046075,GO:0046131,GO:0046385,GO:0046483,GO:0046686,GO:0046704,GO:0046939,GO:0050896,GO:0051063,GO:0055086,GO:0055114,GO:0061731,GO:0071704,GO:0072527,GO:0072528,GO:0090304,GO:0090407,GO:0097159,GO:0097367,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1902494,GO:1990204
Exons2
Evalue6.63e-32
EggNOG OGsCOG0209@1|root,KOG1112@2759|Eukaryota
EC1.17.4.1
Descriptionribonucleoside-diphosphate reductase activity
Cds size225
COG categoryF
BRITEko00000,ko00001,ko00002,ko01000,ko03400
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789217.4444258-UTR-D-mesarthrocarpus_Contig10841:2857..28631680789217.4444258-UTR-D-mesarthrocarpus_Contig10841:2857..2863Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig10841 2858..2863 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789217.4674616-CDS-D-mesarthrocarpus_Contig10841:2863..29891680789217.4674616-CDS-D-mesarthrocarpus_Contig10841:2863..2989Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10841 2864..2989 +
1680789217.4880016-CDS-D-mesarthrocarpus_Contig10841:3746..38451680789217.4880016-CDS-D-mesarthrocarpus_Contig10841:3746..3845Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10841 3747..3845 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10841.3.1prot_D-mesarthrocarpus_Contig10841.3.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10841 2864..3845 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10841.3.1

>prot_D-mesarthrocarpus_Contig10841.3.1 ID=prot_D-mesarthrocarpus_Contig10841.3.1|Name=mRNA_D-mesarthrocarpus_Contig10841.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=75bp
MFVFKRDGRKESVAFDKITRRISKLCYGLDPKYVDPVIISQKVIQGVYPG
VTTGELDELAAQTAAYMATQHREH*
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mRNA from alignment at D-mesarthrocarpus_Contig10841:2858..3845+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10841.3.1 ID=mRNA_D-mesarthrocarpus_Contig10841.3.1|Name=mRNA_D-mesarthrocarpus_Contig10841.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=988bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10841:2858..3845+ (Discosporangium mesarthrocarpum MT17_79)
CTGAACATGTTCGTTTTCAAGCGCGATGGGCGGAAGGAGTCCGTAGCCTT
TGACAAGATCACGAGGAGGATCAGCAAGCTTTGCTATGGTCTCGACCCAA
AGTACGTTGATCCGGTCATCATTTCCCAAAAGGTTGGTGCGGAGACTTGG
TCGCCGATGACATGGCAATGGTGCTTAGCCTTAAGGCTTCAAGTTTCAAG
TTAGGTTGGGGCCCTAGAGACCTAGAGGGACCGTGGCCAGGGAACGCCCT
AGGTGATATAGTATGCCCCAATATGATTCGACGACGGCCTTTCACGCAAT
TGAAGGCGTTAGAGATAGACGGCAATCCCCGAGAGAGGTGATTTGTCCGG
GCAATTGCTAATAATCCCCACTATGCGTGATAGTTGTAAGGGATCCATTG
TGCTCTTAGAACTCGCCTCGGCAAAGAACATTCACGGATGCAAGGAATTT
CCCAATTCATGAAACTGTGCACAGTGCTGCATCTCCTGTCGCGATAGATG
GAGGGGGGGGTAGGATTGTAATGGTTATAGCACACATATTTAGTGTAGGG
GTTGAAGCATTCAACTATCTTTTTGTGTGGCCTGGCACATCTTCGTGCAC
AGCTTGACAGAAAGTACCTTCCAGTGGCTTGCAAGATATTCCCACCTGGA
GGGACACTTAATATTTCCCCCCAAACAGGTACATCAACTAATTCAGAACT
TCAAACCAACCTGATACCCAGATCCTTGCATCCAGAAGTATAGCTGAGGG
AGAACAGGATGGGGTTTCAGCATCAAGGATAGGTTATTGTAATGTACTGT
AGTACTGCCGGACACCAACATTGCAGAACTGGATTTTCTAGAGATATTGC
CCCAATGTTCCCCTTGCCATTTCCTCCTGGATCGTATAGGTGATTCAGGG
AGTCTACCCAGGTGTGACTACAGGGGAGCTGGATGAGCTGGCAGCTCAGA
CAGCCGCCTACATGGCCACACAACACCGTGAGCATTGA
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10841:2858..3845+

>mRNA_D-mesarthrocarpus_Contig10841.3.1 ID=mRNA_D-mesarthrocarpus_Contig10841.3.1|Name=mRNA_D-mesarthrocarpus_Contig10841.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=225bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10841:2858..3845+ (Discosporangium mesarthrocarpum MT17_79)
ATGTTCGTTTTCAAGCGCGATGGGCGGAAGGAGTCCGTAGCCTTTGACAA
GATCACGAGGAGGATCAGCAAGCTTTGCTATGGTCTCGACCCAAAGTACG
TTGATCCGGTCATCATTTCCCAAAAGGTGATTCAGGGAGTCTACCCAGGT
GTGACTACAGGGGAGCTGGATGAGCTGGCAGCTCAGACAGCCGCCTACAT
GGCCACACAACACCGTGAGCATTGA
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