mRNA_D-mesarthrocarpus_Contig10837.3.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10837.3.1
Unique NamemRNA_D-mesarthrocarpus_Contig10837.3.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10837.3.1 vs. uniprot
Match: A0A836CDZ7_9STRA (Nucleotide-diphospho-sugar transferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDZ7_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 7.600e-17
Identity = 41/50 (82.00%), Postives = 44/50 (88.00%), Query Frame = 1 
Query:    1 IGFTSLEKWLSFSPAKNDLESGAAGAKSGVPPGTASSAEAEYYHQTCRRL 150
            IGFTSLEKWLSFSPAKN LE+GAAGA SGVPP TASSAEAE+Y Q  RR+
Sbjct:  490 IGFTSLEKWLSFSPAKNSLEAGAAGAPSGVPPNTASSAEAEFYAQNVRRV 539
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BLAST of mRNA_D-mesarthrocarpus_Contig10837.3.1 vs. uniprot
Match: D8LCQ2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCQ2_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 1.720e-15
Identity = 38/50 (76.00%), Postives = 42/50 (84.00%), Query Frame = 1 
Query:    1 IGFTSLEKWLSFSPAKNDLESGAAGAKSGVPPGTASSAEAEYYHQTCRRL 150
            IGFTS +KWL+FSPAKNDLES AA A  GVPPGTASSAE+E+Y Q  RRL
Sbjct:  512 IGFTSFDKWLTFSPAKNDLESAAAAAADGVPPGTASSAESEFYAQAARRL 561
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BLAST of mRNA_D-mesarthrocarpus_Contig10837.3.1 vs. uniprot
Match: A0A7S2Y4M2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y4M2_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 1.210e-12
Identity = 33/50 (66.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query:    1 IGFTSLEKWLSFSPAKNDLESGAAGAKSGVPPGTASSAEAEYYHQTCRRL 150
            IGFT+L+KWLSFSPAKN L++GA  AK+GVPP T SS EAE Y  T R++
Sbjct:  424 IGFTTLDKWLSFSPAKNSLDTGAGNAKNGVPPATVSSGEAENYAATARKM 473
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BLAST of mRNA_D-mesarthrocarpus_Contig10837.3.1 vs. uniprot
Match: A0A7R9U1R1_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U1R1_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 2.740e-11
Identity = 31/50 (62.00%), Postives = 39/50 (78.00%), Query Frame = 1 
Query:    1 IGFTSLEKWLSFSPAKNDLESGAAGAKSGVPPGTASSAEAEYYHQTCRRL 150
            IGF S  KWLSFSPAKN L++GAA AK+G PPGT +SAEA++Y    ++L
Sbjct:  469 IGFVSFPKWLSFSPAKNSLDAGAANAKNGNPPGTVASAEADFYAAKAKKL 518
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BLAST of mRNA_D-mesarthrocarpus_Contig10837.3.1 vs. uniprot
Match: A0A4D9D7Z1_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D7Z1_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 6.230e-10
Identity = 32/44 (72.73%), Postives = 37/44 (84.09%), Query Frame = 1 
Query:    1 IGFTSLEKWLSFSPAKNDLESGA-AGAKSGVPPGTASSAEAEYY 129
            +GFTS EKWLSFSPAKN LE+GA A A +GVPP TASSAE ++Y
Sbjct:  358 VGFTSFEKWLSFSPAKNSLEAGAKAFAATGVPPATASSAEMDFY 401
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BLAST of mRNA_D-mesarthrocarpus_Contig10837.3.1 vs. uniprot
Match: W7UBR1_9STRA (UDPglucose pyrophosphorylase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7UBR1_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 6.240e-10
Identity = 32/44 (72.73%), Postives = 37/44 (84.09%), Query Frame = 1 
Query:    1 IGFTSLEKWLSFSPAKNDLESGA-AGAKSGVPPGTASSAEAEYY 129
            +GFTS EKWLSFSPAKN LE+GA A A +GVPP TASSAE ++Y
Sbjct:  531 VGFTSFEKWLSFSPAKNSLEAGAKAFAATGVPPATASSAEMDFY 574
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BLAST of mRNA_D-mesarthrocarpus_Contig10837.3.1 vs. uniprot
Match: A0A7S0C779_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C779_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 4.980e-8
Identity = 29/51 (56.86%), Postives = 37/51 (72.55%), Query Frame = 1 
Query:    1 IGFTSLEKWLSFSPAKNDLESGAAGAKSG-VPPGTASSAEAEYYHQTCRRL 150
            +GFT L++WL+FSPAKN LE+G    K+G   PGT SSAE+E Y Q  R+L
Sbjct:  418 VGFTMLDRWLTFSPAKNSLEAGVESCKNGSTAPGTMSSAESEKYIQNQRKL 468
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BLAST of mRNA_D-mesarthrocarpus_Contig10837.3.1 vs. uniprot
Match: A0A448ZEF2_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZEF2_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 1.750e-7
Identity = 29/51 (56.86%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:    1 IGFTSLEKWLSFSPAKNDLESGAAGAKSG-VPPGTASSAEAEYYHQTCRRL 150
            IGFT L++W +FSPAKN LESG   A+ G   PGT SSAE++ Y Q  R+L
Sbjct:  499 IGFTMLDRWFTFSPAKNSLESGVEAAEKGSTAPGTMSSAESDKYIQNQRKL 549
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BLAST of mRNA_D-mesarthrocarpus_Contig10837.3.1 vs. uniprot
Match: A0A7R9VXE0_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VXE0_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 3.220e-7
Identity = 29/51 (56.86%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:    1 IGFTSLEKWLSFSPAKNDLESGAAGAKSGV-PPGTASSAEAEYYHQTCRRL 150
            IGFT+ ++W SFSPAKN LESG    K G   PGT SSAE++ Y Q  R+L
Sbjct:  170 IGFTNFDRWFSFSPAKNSLESGVDAVKGGSNAPGTMSSAESDKYVQNQRKL 220
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BLAST of mRNA_D-mesarthrocarpus_Contig10837.3.1 vs. uniprot
Match: A0A7S2PRU4_9STRA (Hypothetical protein n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PRU4_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 6.100e-7
Identity = 28/51 (54.90%), Postives = 34/51 (66.67%), Query Frame = 1 
Query:    1 IGFTSLEKWLSFSPAKNDLESGAAGAKSG-VPPGTASSAEAEYYHQTCRRL 150
            +GFT LE+W SFSPAKN LESG    + G   PGT SSAE++ Y    R+L
Sbjct:  487 VGFTELERWFSFSPAKNSLESGVESVQKGNTAPGTMSSAESDMYVLNQRKL 537
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10837.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A836CDZ7_9STRA7.600e-1782.00Nucleotide-diphospho-sugar transferase n=1 Tax=Tri... [more]
D8LCQ2_ECTSI1.720e-1576.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2Y4M2_9STRA1.210e-1266.00Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7R9U1R1_9STRA2.740e-1162.00Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A4D9D7Z1_9STRA6.230e-1072.73Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
W7UBR1_9STRA6.240e-1072.73UDPglucose pyrophosphorylase n=1 Tax=Nannochlorops... [more]
A0A7S0C779_9STRA4.980e-856.86Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A448ZEF2_9STRA1.750e-756.86Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A7R9VXE0_9STRA3.220e-756.86Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S2PRU4_9STRA6.100e-754.90Hypothetical protein n=2 Tax=Leptocylindrus danicu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10837contigD-mesarthrocarpus_Contig10837:2793..2942 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LCQ2
Preferred nameUSP
PFAMsUDPGP
Model size150
Max annot lvl2759|Eukaryota
KEGG rclassRC00002
KEGG koko:K00972,ko:K12447
KEGG ReactionR00289,R00416,R00502,R01381,R03077,R08845
KEGG Pathwayko00040,ko00052,ko00053,ko00520,ko01100,ko01130,map00040,map00052,map00053,map00520,map01100,map01130
KEGG ModuleM00014,M00361,M00362
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue2.82e-16
EggNOG OGsCOG4284@1|root,KOG2388@2759|Eukaryota
EC2.7.7.23,2.7.7.64,2.7.7.83
DescriptionUDP-N-acetylglucosamine diphosphorylase activity
Cds size150
COG categoryG
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789217.0788267-CDS-D-mesarthrocarpus_Contig10837:2792..29421680789217.0788267-CDS-D-mesarthrocarpus_Contig10837:2792..2942Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10837 2793..2942 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10837.3.1prot_D-mesarthrocarpus_Contig10837.3.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10837 2793..2942 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10837.3.1

>prot_D-mesarthrocarpus_Contig10837.3.1 ID=prot_D-mesarthrocarpus_Contig10837.3.1|Name=mRNA_D-mesarthrocarpus_Contig10837.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=50bp
IGFTSLEKWLSFSPAKNDLESGAAGAKSGVPPGTASSAEAEYYHQTCRRL
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mRNA from alignment at D-mesarthrocarpus_Contig10837:2793..2942-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10837.3.1 ID=mRNA_D-mesarthrocarpus_Contig10837.3.1|Name=mRNA_D-mesarthrocarpus_Contig10837.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=150bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10837:2793..2942- (Discosporangium mesarthrocarpum MT17_79)
ATTGGCTTCACTTCCCTGGAGAAGTGGCTTTCCTTCTCCCCTGCCAAGAA
TGACCTGGAGTCAGGGGCAGCGGGGGCCAAGTCCGGGGTCCCACCTGGGA
CCGCGTCCAGCGCAGAGGCCGAGTACTACCACCAGACGTGCCGGAGGCTT
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10837:2793..2942-

>mRNA_D-mesarthrocarpus_Contig10837.3.1 ID=mRNA_D-mesarthrocarpus_Contig10837.3.1|Name=mRNA_D-mesarthrocarpus_Contig10837.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=150bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10837:2793..2942- (Discosporangium mesarthrocarpum MT17_79)
ATTGGCTTCACTTCCCTGGAGAAGTGGCTTTCCTTCTCCCCTGCCAAGAA
TGACCTGGAGTCAGGGGCAGCGGGGGCCAAGTCCGGGGTCCCACCTGGGA
CCGCGTCCAGCGCAGAGGCCGAGTACTACCACCAGACGTGCCGGAGGCTT
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