mRNA_D-mesarthrocarpus_Contig10836.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10836.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10836.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig10836.1.1 vs. uniprot
Match: A0A6H5JCG0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG0_9PHAE)

HSP 1 Score: 347 bits (889), Expect = 6.900e-111
Identity = 199/468 (42.52%), Postives = 284/468 (60.68%), Query Frame = 1
Query:    4 GRKAIGGRWVWKGKYNELGFVTRAKARLVAKGYSQQEELDCFDTYAPTPSSSTIRLLAAFANETNRGMVHFDAEQALIQADIDTEVLVRL--------------NRALYGLKQASRRWNDRSTQVLLGLGFDPSKADPCLFRYATSFVTVHI-----DDMFVVGTREDCDALSKALSFEFPTNNLGPLSLHTGCVFARDWERGQLLISQTAFINQLCERVDVCSSSPTPAAPNARLLPRQEGEGAGNARLRELIGALIWAADMTRPDISNSVRSLTRSSQDPSEEPSKGAIRVLQYLHGSREQGIVYEQGSGLELAAFADSSFSGDRAGRRYVSGGAVVFGRAAVPWFSRTQRTVALSTSEAEYMAMGKVVKEALFVRNILFFMQPQCGVPEGICVYKDNNGAIDLAKNPLSTVRTKHINVRYHFLGDLVQSKDISIYHVSTERQAADVLTKALEKESFFRHI-KLMN 1347
            GR+ +  +W +  K N+ G + + KARLVA+G+SQ   +D F + +P PSS++I+L+ A ANE +  + H+D +QA   A +D +V +RL               RA+YGLKQ+ R+W   +   L+  GF+  KADPC+FR     V         D + V G+ +DC  L  +L+  FPT +LG      GC   RD E G L ISQTA+I+ +  R DV S+S  PA+P   + P+++ E  G   +RE IG+++W +  +RPDIS +VR++ R +  P+E   K  +++L YL  +R+ GI YE+GSGL LA + D+S++ D   RR VSG A   G   +   S+TQ  V+LS++EAEY+A G+ VKEALFVR +L F+ P+      I V +DN GA+ L +NPLS+ R+KHI+VRYHF+  L +S DISI  VST  Q AD+LTKAL K S   H  KLMN
Sbjct:   41 GRRPVSSKWRFTWKTNKDGKIEKFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKSLKLNHWDVKQAFTHAKLDEDVFLRLPAGCGEKSHKVVKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMKDDVVXXXXXXXXDXILVAGSDDDCKELLASLNKAFPTKDLGECVWFDGCAVERDLEAGTLRISQTAYIDSIVNRFDVQSTSSIPASPGVDIGPKRDDESGGEWPVREAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLAVYVDASYA-DAEDRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVLSFIAPETS-GSSIQVLEDNQGAMALVQNPLSSARSKHIDVRYHFIRGLFRSGDISIKFVSTSEQHADMLTKALSKSSLQYHRRKLMN 506          
BLAST of mRNA_D-mesarthrocarpus_Contig10836.1.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 359 bits (922), Expect = 2.400e-109
Identity = 203/469 (43.28%), Postives = 288/469 (61.41%), Query Frame = 1
Query:    4 GRKAIGGRWVWKGKYNELGFVTRAKARLVAKGYSQQEELDCFDTYAPTPSSSTIRLLAAFANETNRGMVHFDAEQALIQADIDTEVLVRL--------------NRALYGLKQASRRWNDRSTQVLLGLGFDPSKADPCLFR-----YATSFVTVHIDDMFVVGTREDCDALSKALSFEFPTNNLGPLSLHTGCVFARDWERGQLLISQTAFINQLCERVDVCSSSPTPAAPNARLLPRQEGEGAGNARLRELIGALIWAADMTRPDISNSVRSLTRSSQDPSEEPSKGAIRVLQYLHGSREQGIVYEQGSGLELAAFADSSFSGDRAGRRYVSGGAVVFGRAAVPWFSRTQRTVALSTSEAEYMAMGKVVKEALFVRNILFFMQPQCGVPEGICVYKDNNGAIDLAKNPLSTVRTKHINVRYHFLGDLVQSKDISIYHVSTERQAADVLTKALEKESFFRHI-KLMNL 1350
            GR+ +  +W +  K N+ G +   KARLVA+G+SQ   +D F + +P PSS++I+L+ A ANE    + H+D +QA   A +D EV ++L               RA+YGLKQ+ R+W   +   L+  GF+  KADPC+FR          + +++DD+ V G+ EDC+ L  +L+ +FPT NLG      GC   RD E G L ISQTA+I+ + ER DV S+S  PA P A L P++E E  G   +RE IG+++W +  +RPD+S +VR++ R +  P++       ++L YL G+R+ GI Y++GSGL LA + D+S++ D   RR VSG A   G   V   S+TQ  V+LS++EAEY+A G+ VKEALFVR +L F+ P+      I V +DN GAI L +NPLS+ RTKHI+VRYHF+  L +S DIS+  V T  Q AD+LTKAL + S   H  KLMNL
Sbjct:  778 GRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYA-DTEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETS-GSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRVSLQYHRRKLMNL 1244          
BLAST of mRNA_D-mesarthrocarpus_Contig10836.1.1 vs. uniprot
Match: A0A6H5JV80_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV80_9PHAE)

HSP 1 Score: 347 bits (889), Expect = 5.510e-109
Identity = 190/461 (41.21%), Postives = 280/461 (60.74%), Query Frame = 1
Query:    4 GRKAIGGRWVWKGKYNELGFVTRAKARLVAKGYSQQEELDCFDTYAPTPSSSTIRLLAAFANETNRGMVHFDAEQALIQADIDTEVL--------------VRLNRALYGLKQASRRWNDRSTQVLLGLGFDPSKADPCLFRY-----ATSFVTVHIDDMFVVGTREDCDALSKALSFEFPTNNLGPLSLHTGCVFARDWERGQLLISQTAFINQLCERVDVCSSSPTPAAPNARLLPRQEGEGAGNARLRELIGALIWAADMTRPDISNSVRSLTRSSQDPSEEPSKGAIRVLQYLHGSREQGIVYEQGSGLELAA--FADSSFSGDRAGRRYVSGGAVVFGRAAVPWFSRTQRTVALSTSEAEYMAMGKVVKEALFVRNILFFMQPQCGVPEGICVYKDNNGAIDLAKNPLSTVRTKHINVRYHFLGDLVQSKDISIYHVSTERQAADVLTKALEKESF 1323
            G   I  RWV+K K +E G + +AKARLVAKG+ Q+  +D  +T++PT ++++IRL+ A A + N  ++H D EQA  Q+ +D EVL              VRLN++LYGLKQASR +  R    LL +GF+ S +DPC+ R+         + +H+DD+   GT+   + + +AL    PT NLG +    GC F+RD E G + ISQ ++I  + ER ++C +S  PA+P        E E AG+   RE++G L+W A+ TRP+ SN+VR++ R S +P +   K A ++L YL  +    + Y+Q + +++    + D+ F+     RR VSG  V+     V WFS TQ+ V+LSTSEAEY+AMG  VKEALFV  +L  ++P    P  I V++DN GAI LA+NPLS+ R+KHI+VR+HFL +L +   I + HV ++ Q AD+LTKAL +  F
Sbjct:  254 GCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFFQSKLDHEVLMKLPPGCDSMSGKIVRLNKSLYGLKQASRTFYKRLVSDLLRIGFEQSLSDPCVLRFMMGDEVMGIIAIHVDDILYAGTKRLAEVIVEALGDSLPTKNLGEVRFFLGCAFSRDREAGTIEISQESYIRSVLERFNICRTSSIPASPANDSRSVMEDEEAGDVPFREVVGCLMWIANNTRPETSNAVRTVARHSHEPKKSDWKAAQKILSYLKETAHLTLKYKQDTTVDVGTLVYVDADFASKATDRRSVSGALVLVAGCLVSWFSWTQKCVSLSTSEAEYIAMGDGVKEALFVNGMLQLLRPSAK-PRKIDVFEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTKALPRNLF 713          
BLAST of mRNA_D-mesarthrocarpus_Contig10836.1.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 359 bits (922), Expect = 8.080e-108
Identity = 203/469 (43.28%), Postives = 288/469 (61.41%), Query Frame = 1
Query:    4 GRKAIGGRWVWKGKYNELGFVTRAKARLVAKGYSQQEELDCFDTYAPTPSSSTIRLLAAFANETNRGMVHFDAEQALIQADIDTEVLVRL--------------NRALYGLKQASRRWNDRSTQVLLGLGFDPSKADPCLFR-----YATSFVTVHIDDMFVVGTREDCDALSKALSFEFPTNNLGPLSLHTGCVFARDWERGQLLISQTAFINQLCERVDVCSSSPTPAAPNARLLPRQEGEGAGNARLRELIGALIWAADMTRPDISNSVRSLTRSSQDPSEEPSKGAIRVLQYLHGSREQGIVYEQGSGLELAAFADSSFSGDRAGRRYVSGGAVVFGRAAVPWFSRTQRTVALSTSEAEYMAMGKVVKEALFVRNILFFMQPQCGVPEGICVYKDNNGAIDLAKNPLSTVRTKHINVRYHFLGDLVQSKDISIYHVSTERQAADVLTKALEKESFFRHI-KLMNL 1350
            GR+ +  +W +  K N+ G +   KARLVA+G+SQ   +D F + +P PSS++I+L+ A ANE    + H+D +QA   A +D EV ++L               RA+YGLKQ+ R+W   +   L+  GF+  KADPC+FR          + +++DD+ V G+ EDC+ L  +L+ +FPT NLG      GC   RD E G L ISQTA+I+ + ER DV S+S  PA P A L P++E E  G   +RE IG+++W +  +RPD+S +VR++ R +  P++       ++L YL G+R+ GI Y++GSGL LA + D+S++ D   RR VSG A   G   V   S+TQ  V+LS++EAEY+A G+ VKEALFVR +L F+ P+      I V +DN GAI L +NPLS+ RTKHI+VRYHF+  L +S DIS+  V T  Q AD+LTKAL + S   H  KLMNL
Sbjct: 1157 GRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYA-DTEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETS-GSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRVSLQYHRRKLMNL 1623          
BLAST of mRNA_D-mesarthrocarpus_Contig10836.1.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 359 bits (922), Expect = 1.570e-107
Identity = 203/469 (43.28%), Postives = 288/469 (61.41%), Query Frame = 1
Query:    4 GRKAIGGRWVWKGKYNELGFVTRAKARLVAKGYSQQEELDCFDTYAPTPSSSTIRLLAAFANETNRGMVHFDAEQALIQADIDTEVLVRL--------------NRALYGLKQASRRWNDRSTQVLLGLGFDPSKADPCLFR-----YATSFVTVHIDDMFVVGTREDCDALSKALSFEFPTNNLGPLSLHTGCVFARDWERGQLLISQTAFINQLCERVDVCSSSPTPAAPNARLLPRQEGEGAGNARLRELIGALIWAADMTRPDISNSVRSLTRSSQDPSEEPSKGAIRVLQYLHGSREQGIVYEQGSGLELAAFADSSFSGDRAGRRYVSGGAVVFGRAAVPWFSRTQRTVALSTSEAEYMAMGKVVKEALFVRNILFFMQPQCGVPEGICVYKDNNGAIDLAKNPLSTVRTKHINVRYHFLGDLVQSKDISIYHVSTERQAADVLTKALEKESFFRHI-KLMNL 1350
            GR+ +  +W +  K N+ G +   KARLVA+G+SQ   +D F + +P PSS++I+L+ A ANE    + H+D +QA   A +D EV ++L               RA+YGLKQ+ R+W   +   L+  GF+  KADPC+FR          + +++DD+ V G+ EDC+ L  +L+ +FPT NLG      GC   RD E G L ISQTA+I+ + ER DV S+S  PA P A L P++E E  G   +RE IG+++W +  +RPD+S +VR++ R +  P++       ++L YL G+R+ GI Y++GSGL LA + D+S++ D   RR VSG A   G   V   S+TQ  V+LS++EAEY+A G+ VKEALFVR +L F+ P+      I V +DN GAI L +NPLS+ RTKHI+VRYHF+  L +S DIS+  V T  Q AD+LTKAL + S   H  KLMNL
Sbjct: 1320 GRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYA-DTEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETS-GSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRVSLQYHRRKLMNL 1786          
BLAST of mRNA_D-mesarthrocarpus_Contig10836.1.1 vs. uniprot
Match: A0A6H5KKK1_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK1_9PHAE)

HSP 1 Score: 345 bits (886), Expect = 3.710e-106
Identity = 189/460 (41.09%), Postives = 281/460 (61.09%), Query Frame = 1
Query:   16 IGGRWVWKGKYNELGFVTRAKARLVAKGYSQQEELDCFDTYAPTPSSSTIRLLAAFANETNRGMVHFDAEQALIQADIDTEV--------------LVRLNRALYGLKQASRRWNDRSTQVLLGLGFDPSKADPCLFRY-----ATSFVTVHIDDMFVVGTREDCDALSKALSFEFPTNNLGPLSLHTGCVFARDWERGQLLISQTAFINQLCERVDVCSSSPTPAAPNARLLPRQEGEGAGNARLRELIGALIWAADMTRPDISNSVRSLTRSSQDPSEEPSKGAIRVLQYLHGSREQGIVYEQGSGLELAA--FADSSFSGDRAGRRYVSGGAVVFGRAAVPWFSRTQRTVALSTSEAEYMAMGKVVKEALFVRNILFFMQPQCGVPEGICVYKDNNGAIDLAKNPLSTVRTKHINVRYHFLGDLVQSKDISIYHVSTERQAADVLTKALEKESFFRH 1332
            I  RWV+K K +E G + +AKARLVAKG+ Q+  +D  +T++PT ++++ RL+ A A + N  ++H+D EQA +Q+++D EV              +VRLN++LYGLKQASR +  R    L  +GF+ S +DPC+ R+         V +H+DD+   GT+   + +  AL    PT NLG +    GC F RD E G + +SQ ++I  + ER +VC +S  PA+P        E EGAG+   RE++G+L+W A+ TRPDISN+VR++ R S +P +   K A ++L YL  +    + ++  + ++ +   + D+ F+     RR VSG  V+     V W S+TQ+ V+ STSEAEY+AMG  VKEALFV  +L F++P    P  I V +DN GAI LA+NPLS+ R+KHI+VR+HFL +L +   I + HV +E Q AD+LTKAL ++ F  H
Sbjct:  493 IDARWVFKWKADETGKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDILYAGTKSLAEVVVAALGDSLPTKNLGEVRFFLGCAFVRDREAGTIEMSQESYIRSVLERFNVCRTSSIPASPTNDYRSVMEDEGAGDVPFREVVGSLMWIANQTRPDISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKPDNSVDASTLVYVDADFASKANDRRSVSGAIVLVASMPVVWISKTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQFLRPSAK-PRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSEEQHADILTKALPRDLFEVH 951          
BLAST of mRNA_D-mesarthrocarpus_Contig10836.1.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 354 bits (908), Expect = 9.400e-106
Identity = 196/456 (42.98%), Postives = 281/456 (61.62%), Query Frame = 1
Query:    4 GRKAIGGRWVWKGKYNELGFVTRAKARLVAKGYSQQEELDCFDTYAPTPSSSTIRLLAAFANETNRGMVHFDAEQALIQADIDTEVLVRL--------------NRALYGLKQASRRWNDRSTQVLLGLGFDPSKADPCLFR-----YATSFVTVHIDDMFVVGTREDCDALSKALSFEFPTNNLGPLSLHTGCVFARDWERGQLLISQTAFINQLCERVDVCSSSPTPAAPNARLLPRQEGEGAGNARLRELIGALIWAADMTRPDISNSVRSLTRSSQDPSEEPSKGAIRVLQYLHGSREQGIVYEQGSGLELAAFADSSFSGDRAGRRYVSGGAVVFGRAAVPWFSRTQRTVALSTSEAEYMAMGKVVKEALFVRNILFFMQPQCGVPEGICVYKDNNGAIDLAKNPLSTVRTKHINVRYHFLGDLVQSKDISIYHVSTERQAADVLTKALEK 1314
            GR+ +  +W +  K N+ G +   KARLVA+G+SQ   +D F + +P PSS++I+L+ A ANE    + H+D +QA   A +D EV ++L               RA+YGLKQ+ R+W   +   L+  GF+  KADPC+FR          + +++DD+ V G+ EDC+ L  +L+ +FPT NLG      GC   RD E G L ISQTA+I+ + ER DV S+S  PA P A L P++E E  G   +RE IG+++W +  +RPD+S +VR++ R +  P++       ++L YL G+R+ GI Y++GSGL LA + D+S++ D   RR VSG A   G   V   S+TQ  V+LS++EAEY+A G+ VKEALFVR +L F+ P+      I V +DN GAI L +NPLS+ RTKHI+VRYHF+  L +S DIS+  V T  Q AD+LTKAL +
Sbjct: 1177 GRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYA-DTEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETS-GSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKALSR 1630          
BLAST of mRNA_D-mesarthrocarpus_Contig10836.1.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE)

HSP 1 Score: 346 bits (888), Expect = 2.300e-104
Identity = 190/464 (40.95%), Postives = 282/464 (60.78%), Query Frame = 1
Query:    4 GRKAIGGRWVWKGKYNELGFVTRAKARLVAKGYSQQEELDCFDTYAPTPSSSTIRLLAAFANETNRGMVHFDAEQALIQADIDTEV--------------LVRLNRALYGLKQASRRWNDRSTQVLLGLGFDPSKADPCLFRY-----ATSFVTVHIDDMFVVGTREDCDALSKALSFEFPTNNLGPLSLHTGCVFARDWERGQLLISQTAFINQLCERVDVCSSSPTPAAPNARLLPRQEGEGAGNARLRELIGALIWAADMTRPDISNSVRSLTRSSQDPSEEPSKGAIRVLQYLHGSREQGIVYEQGSGLELAA--FADSSFSGDRAGRRYVSGGAVVFGRAAVPWFSRTQRTVALSTSEAEYMAMGKVVKEALFVRNILFFMQPQCGVPEGICVYKDNNGAIDLAKNPLSTVRTKHINVRYHFLGDLVQSKDISIYHVSTERQAADVLTKALEKESFFRH 1332
            G   I  RWV+K K +E G + +AKARLVAKG+ Q+  +D  +T++PT ++++ RL+ A A + N  ++H+D EQA +Q+++D EV              +VRLN++LYGLKQASR +  R    L  +GF+ S +DPC+ R+         V +H+DD+   GT+   + +  AL    PT NLG +    GC F RD E G + +SQ ++I  + ER +VC +S  PA+P        E EGAG+   RE++G+L+W A+ TRPDISN+VR++ R S +P +   K A ++L YL  +    + ++  + ++ +   + D+ F+     RR VSG  V+     V W S+TQ+ V+ STSEAEY+AMG  VKEALFV  +L F++P    P  I V +DN GAI LA+NPLS+ R+KHI+VR+HFL +L +   I + HV +E Q AD+LTKAL ++ F  H
Sbjct:  756 GCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDILYAGTKSLAEVVVAALGDSLPTKNLGEVRFFLGCAFVRDREAGTIEMSQESYIRSVLERFNVCRTSSIPASPTNDYRSVMEDEGAGDVPFREVVGSLMWIANQTRPDISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKPDNSVDASTLVYVDADFASKANDRRSVSGAIVLVASMPVVWISKTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQFLRPSAK-PRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSEEQHADILTKALPRDLFEVH 1218          
BLAST of mRNA_D-mesarthrocarpus_Contig10836.1.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE)

HSP 1 Score: 325 bits (832), Expect = 8.110e-104
Identity = 178/430 (41.40%), Postives = 256/430 (59.53%), Query Frame = 1
Query:  106 QQEELDCFDTYAPTPSSSTIRLLAAFANETNRGMVHFDAEQALIQADIDTEV--------------LVRLNRALYGLKQASRRWNDRSTQVLLGLGFDPSKADPCLFRYATS-----FVTVHIDDMFVVGTREDCDALSKALSFEFPTNNLGPLSLHTGCVFARDWERGQLLISQTAFINQLCERVDVCSSSPTPAAPNARLLPRQEGEGAGNARLRELIGALIWAADMTRPDISNSVRSLTRSSQDPSEEPSKGAIRVLQYLHGSREQGIVYEQGS--GLELAAFADSSFSGDRAGRRYVSGGAVVFGRAAVPWFSRTQRTVALSTSEAEYMAMGKVVKEALFVRNILFFMQPQCGVPEGICVYKDNNGAIDLAKNPLSTVRTKHINVRYHFLGDLVQSKDISIYHVSTERQAADVLTKALEKESFFRH 1332
            Q+  +DC +TYAPT + S++RLLAA A E N  + HFD +QA +Q+D+D +V              +V+LN++LYGLKQASR+W+    + L+ LGF    AD C+FR          + VH+DD+F +G  E CD   + L+   P  NLG L  ++GC + RDW+ G L ISQ  +  +L     V      P     +L    + E   +   RELIG+L+W A  TRPDI+N+VR++ R    P E   +  + +L Y+  + + GI + +GS  GL +  F D+ ++   A RR VSGG V+ G   + WFSRTQ+ V LST+EAEY+++  V+KE LF+R +  FM P+ G+P  I V++DN GAI LA+NP+S   +KHI+VR+HF+ +LV  K+ISI+HV +  Q AD LTKAL    F  H
Sbjct:    2 QRVHVDCGETYAPTVAVSSVRLLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERCDQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLKLSEFDQDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMP-CIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKALHAGDFEFH 430          
BLAST of mRNA_D-mesarthrocarpus_Contig10836.1.1 vs. uniprot
Match: A0A6H5KPV1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPV1_9PHAE)

HSP 1 Score: 331 bits (848), Expect = 2.970e-103
Identity = 193/464 (41.59%), Postives = 269/464 (57.97%), Query Frame = 1
Query:    4 GRKAIGGRWVWKGKYNELGFVTRAKARLVAKGYSQQEELDCFDTYAPTPSSSTIRLLAAFANETNRGMVHFDAEQALIQADIDTEV--------------LVRLNRALYGLKQASRRWNDRSTQVLLGLGFDPSKADPCLFRY-----ATSFVTVHIDDMFVVGTREDCDALSKALSFEFPTNNLGPLSLHTGCVFARDWERGQLLISQTAFINQLCERVDVCSSSPTPAAPNARLLPRQEGEGAGNARLRELIGALIWAADMTRPDISNSVRSLTRSSQDPSEEPSKGAIRVLQYLHGSREQGIVYEQGSGLELAA--FADSSFSGDRAGRRYVSGGAVVFGRAAVPWFSRTQRTVALSTSEAEYMAMGKVVKEALFVRNILFFMQPQCGVPEGICVYKDNNGAIDLAKNPLSTVRTKHINVRYHFLGDLVQSKDISIYHVSTERQAADVLTKALEKESFFRH 1332
            G   I  RWV+K K +E G + +AKARLVAKG+ Q+  +D   T++PT ++++IRLL A A + N  ++H D EQA +Q  +D  V              +VRLN++LYGLKQASR +  R    L  +GF+ S +DPC+ R+         V +H+DD+   G++   + +  AL    PT NLG +    GC F RD E G + ISQ ++I  + ER +V  +S  PA+P        E E AG+   RE++G  +W A  TRPDISN VR++ R S +P     K A ++L YL G+    + +++ S +++    + D+ F+     RR VSG  V      V W SRTQ+ VA STSEAEY+AMG  VKEALF   +L F++P     E I V +DN GAI LA NPLS+ R KHI+VR+HFL  L +   I I HVS++ Q AD+LTKAL +E F  H
Sbjct:  208 GCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGIDYLLTFSPTANAASIRLLVALACKYNLELLHLDIEQAFVQTKLDHAVFMKLPPGCGTMSGKVVRLNKSLYGLKQASRTFYMRLVSDLKRIGFEQSLSDPCVLRFMMGDEVMGMVAIHVDDILYAGSKSLAETVVAALGDSLPTKNLGEVKFFLGCAFRRDREAGTIEISQESYIRSVLERFNVVRTSSIPASPTVVNRSVMENEEAGDVPFREVVGCAMWIASQTRPDISNVVRAVARHSHEPKLSHWKAAQKILNYLLGTAHLSLNFKRDSSVDVGTLVYVDADFASKATDRRSVSGALVFVAGMLVVWTSRTQKCVAQSTSEAEYLAMGDGVKEALFEDGMLQFLRPSEKSRE-IKVLEDNEGAIALADNPLSSGRRKHIDVRHHFLRSLTEEGRIKISHVSSKEQHADILTKALPRELFEVH 670          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10836.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JCG0_9PHAE6.900e-11142.52Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KSG8_9PHAE2.400e-10943.28Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JV80_9PHAE5.510e-10941.21Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZQ8_9PHAE8.080e-10843.28Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE1.570e-10743.28Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6H5KKK1_9PHAE3.710e-10641.09Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5JN00_9PHAE9.400e-10642.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRL9_9PHAE2.300e-10440.95Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5JLN0_9PHAE8.110e-10441.40Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KPV1_9PHAE2.970e-10341.59Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10836contigD-mesarthrocarpus_Contig10836:1181..2588 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog67593.Physo141588
PFAMsDUF4219,RVT_2,Retrotran_gag_2,gag_pre-integrs,rve,zf-CCHC
Model size1353
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.18e-70
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3QHJF@4776|Peronosporales
Descriptiongag-polypeptide of LTR copia-type
Cds size1353
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789217.0246885-CDS-D-mesarthrocarpus_Contig10836:1180..14421680789217.0246885-CDS-D-mesarthrocarpus_Contig10836:1180..1442Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10836 1181..1442 +
1680789217.0343335-CDS-D-mesarthrocarpus_Contig10836:1482..16141680789217.0343335-CDS-D-mesarthrocarpus_Contig10836:1482..1614Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10836 1483..1614 +
1680789217.0436609-CDS-D-mesarthrocarpus_Contig10836:1629..25881680789217.0436609-CDS-D-mesarthrocarpus_Contig10836:1629..2588Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10836 1630..2588 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10836.1.1prot_D-mesarthrocarpus_Contig10836.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10836 1181..2588 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10836.1.1

>prot_D-mesarthrocarpus_Contig10836.1.1 ID=prot_D-mesarthrocarpus_Contig10836.1.1|Name=mRNA_D-mesarthrocarpus_Contig10836.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=451bp
TGRKAIGGRWVWKGKYNELGFVTRAKARLVAKGYSQQEELDCFDTYAPTP
SSSTIRLLAAFANETNRGMVHFDAEQALIQADIDTEVLVRLNRALYGLKQ
ASRRWNDRSTQVLLGLGFDPSKADPCLFRYATSFVTVHIDDMFVVGTRED
CDALSKALSFEFPTNNLGPLSLHTGCVFARDWERGQLLISQTAFINQLCE
RVDVCSSSPTPAAPNARLLPRQEGEGAGNARLRELIGALIWAADMTRPDI
SNSVRSLTRSSQDPSEEPSKGAIRVLQYLHGSREQGIVYEQGSGLELAAF
ADSSFSGDRAGRRYVSGGAVVFGRAAVPWFSRTQRTVALSTSEAEYMAMG
KVVKEALFVRNILFFMQPQCGVPEGICVYKDNNGAIDLAKNPLSTVRTKH
INVRYHFLGDLVQSKDISIYHVSTERQAADVLTKALEKESFFRHIKLMNL
*
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mRNA from alignment at D-mesarthrocarpus_Contig10836:1181..2588+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10836.1.1 ID=mRNA_D-mesarthrocarpus_Contig10836.1.1|Name=mRNA_D-mesarthrocarpus_Contig10836.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1408bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10836:1181..2588+ (Discosporangium mesarthrocarpum MT17_79)
ACTGGACGAAAGGCGATTGGGGGTAGGTGGGTGTGGAAAGGGAAATATAA CGAGCTCGGCTTTGTCACTAGAGCCAAGGCTAGATTAGTGGCGAAGGGGT ACAGCCAACAGGAAGAGTTGGATTGCTTCGACACTTACGCGCCAACCCCT TCATCATCCACAATACGTCTTCTGGCAGCATTTGCTAATGAGACTAACCG AGGGATGGTACACTTTGACGCTGAACAGGCGTTAATCCAAGCTGACATCG ATACAGAAGTATGTCAAGCTCCCACAAGGGTGTGAATAATTGTCCAACAC AGTAGTCCGTCTCAATCGCGCTTTGTATGGCCTGAAACAAGCCAGTAGGC GTTGGAACGACAGATCCACACAAGTTCTACTCGGGCTGGGTTTTGATCCG AGTAAGGCGGATCCATGTCTATTCCGGTATGCCAGTAACTAAGATACAGC CTCGTTCGTTACCGTCCATATCGATGATATGTTTGTGGTGGGTACGCGCG AGGATTGTGACGCGTTGAGTAAAGCTCTTTCTTTTGAGTTCCCAACCAAC AACCTTGGGCCTTTGAGCTTGCACACGGGATGTGTGTTTGCTCGGGATTG GGAGAGAGGACAATTGTTGATCTCACAAACTGCTTTCATCAACCAACTCT GTGAACGTGTTGATGTGTGTTCCTCAAGCCCCACCCCAGCAGCACCAAAT GCAAGGCTCTTGCCTCGACAGGAAGGTGAAGGCGCAGGGAATGCGAGGCT CCGGGAACTAATTGGTGCCCTTATTTGGGCAGCCGATATGACCCGACCTG ACATATCAAACAGTGTGAGAAGCCTGACAAGGTCCTCTCAAGACCCCAGT GAGGAACCTTCGAAGGGAGCCATTCGGGTCCTTCAATATCTCCACGGATC TCGGGAACAAGGAATAGTTTATGAACAGGGGAGTGGGCTAGAGTTAGCTG CCTTTGCAGATTCTTCCTTTTCCGGAGACCGAGCAGGCAGACGTTACGTT TCCGGAGGGGCTGTGGTTTTTGGGAGAGCTGCAGTACCTTGGTTTTCAAG GACACAGAGAACTGTGGCATTGTCTACATCTGAAGCCGAGTACATGGCCA TGGGGAAGGTCGTCAAGGAGGCACTTTTTGTGCGCAACATTCTGTTTTTC ATGCAACCACAGTGTGGGGTACCTGAGGGCATTTGTGTGTACAAGGACAA CAATGGGGCAATTGACCTAGCTAAGAACCCCTTGAGTACAGTAAGGACAA AGCACATTAATGTGCGGTATCACTTCCTTGGGGACCTAGTGCAGAGTAAG GACATTAGTATATACCATGTATCCACAGAGAGACAAGCAGCTGATGTACT GACTAAGGCATTGGAGAAAGAGAGCTTCTTTAGACATATAAAACTCATGA ATTTGTGA
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10836:1181..2588+

>mRNA_D-mesarthrocarpus_Contig10836.1.1 ID=mRNA_D-mesarthrocarpus_Contig10836.1.1|Name=mRNA_D-mesarthrocarpus_Contig10836.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=1353bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10836:1181..2588+ (Discosporangium mesarthrocarpum MT17_79)
ACTGGACGAAAGGCGATTGGGGGTAGGTGGGTGTGGAAAGGGAAATATAA
CGAGCTCGGCTTTGTCACTAGAGCCAAGGCTAGATTAGTGGCGAAGGGGT
ACAGCCAACAGGAAGAGTTGGATTGCTTCGACACTTACGCGCCAACCCCT
TCATCATCCACAATACGTCTTCTGGCAGCATTTGCTAATGAGACTAACCG
AGGGATGGTACACTTTGACGCTGAACAGGCGTTAATCCAAGCTGACATCG
ATACAGAAGTATTAGTCCGTCTCAATCGCGCTTTGTATGGCCTGAAACAA
GCCAGTAGGCGTTGGAACGACAGATCCACACAAGTTCTACTCGGGCTGGG
TTTTGATCCGAGTAAGGCGGATCCATGTCTATTCCGGTATGCCACCTCGT
TCGTTACCGTCCATATCGATGATATGTTTGTGGTGGGTACGCGCGAGGAT
TGTGACGCGTTGAGTAAAGCTCTTTCTTTTGAGTTCCCAACCAACAACCT
TGGGCCTTTGAGCTTGCACACGGGATGTGTGTTTGCTCGGGATTGGGAGA
GAGGACAATTGTTGATCTCACAAACTGCTTTCATCAACCAACTCTGTGAA
CGTGTTGATGTGTGTTCCTCAAGCCCCACCCCAGCAGCACCAAATGCAAG
GCTCTTGCCTCGACAGGAAGGTGAAGGCGCAGGGAATGCGAGGCTCCGGG
AACTAATTGGTGCCCTTATTTGGGCAGCCGATATGACCCGACCTGACATA
TCAAACAGTGTGAGAAGCCTGACAAGGTCCTCTCAAGACCCCAGTGAGGA
ACCTTCGAAGGGAGCCATTCGGGTCCTTCAATATCTCCACGGATCTCGGG
AACAAGGAATAGTTTATGAACAGGGGAGTGGGCTAGAGTTAGCTGCCTTT
GCAGATTCTTCCTTTTCCGGAGACCGAGCAGGCAGACGTTACGTTTCCGG
AGGGGCTGTGGTTTTTGGGAGAGCTGCAGTACCTTGGTTTTCAAGGACAC
AGAGAACTGTGGCATTGTCTACATCTGAAGCCGAGTACATGGCCATGGGG
AAGGTCGTCAAGGAGGCACTTTTTGTGCGCAACATTCTGTTTTTCATGCA
ACCACAGTGTGGGGTACCTGAGGGCATTTGTGTGTACAAGGACAACAATG
GGGCAATTGACCTAGCTAAGAACCCCTTGAGTACAGTAAGGACAAAGCAC
ATTAATGTGCGGTATCACTTCCTTGGGGACCTAGTGCAGAGTAAGGACAT
TAGTATATACCATGTATCCACAGAGAGACAAGCAGCTGATGTACTGACTA
AGGCATTGGAGAAAGAGAGCTTCTTTAGACATATAAAACTCATGAATTTG
TGA
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