mRNA_D-mesarthrocarpus_Contig10835.4.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10835.4.1
Unique NamemRNA_D-mesarthrocarpus_Contig10835.4.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10835.4.1 vs. uniprot
Match: D8LCZ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCZ5_ECTSI)

HSP 1 Score: 229 bits (584), Expect = 1.380e-63
Identity = 158/366 (43.17%), Postives = 202/366 (55.19%), Query Frame = 1 
Query:    4 AGSSHARDTTA-AHVTARRLVVFLQLVLFRGWRPTWWPLAKGPFPENSREASCGRSEGGRGXXXXXXXXXXXXXXRDAPLSGDEPASECFHTLEVALTPLVLSLLNVA-----------HTSG-TLGLGGGEGAGESARCSSAVEQGTMAVAPATVFAARVEDALLRSVEGQLWEASRQSYGDQGWAVTAATEVDDRRCLCHPRLPYVRWAARLVQAGSGAAGTEVARRVFRAWGVGLRSPSLPLKQHVCAELSRLLDGALAALDLAR----GP-------------GGGVEATVAAS------------QHLRRCLDGLPLRRLRSLARRRLLKEAEDEPMMSRVLQALIDLVATAELAEQVLNK 975
            A S  A  T+      +R+   FLQLVLFRGW P WWPLA     +NS        E G                    L   EP  ECF +L V +TP+VLSL+  A           H+S  + G   G G G+ +R S  ++Q          F A VE+A+L+SV  QL  A+R  +GD  WA + A+E+ D  CL +PRL YV WAAR+VQAGSGA    V RR+FRAW   LRSPSLP+KQ VCAELSRLLD A+ A+D A     GP             GGG E++  +S            + LR+C++ LPL RLRSLA RR+LKE EDEPM+SR LQ+++DLV++AELA +VL +
Sbjct: 4700 AASPRASSTSLRTRAASRQFSSFLQLVLFRGWHPGWWPLA-----DNSSGRWSESLEAGEAGAGGRREDGEEEDENRGVLDDKEPMPECFRSLPVVITPVVLSLIRAAAAQKAAASPPAHSSPKSPGTSKGLGLGQPSRSSLQLQQ-------QQPFGAYVEEAILQSVASQLRLATRIGHGDHAWAPSDASELSDSHCLRYPRLRYVNWAARVVQAGSGA--PTVPRRIFRAWATALRSPSLPVKQQVCAELSRLLDEAVQAVDRAHRAEAGPSSAPAAVRAVTAAGGGGESSAVSSGEAVRLQRAAVLKRLRQCVEILPLERLRSLAERRMLKEGEDEPMLSRALQSIVDLVSSAELALRVLRE 5051
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BLAST of mRNA_D-mesarthrocarpus_Contig10835.4.1 vs. uniprot
Match: A0A6H5KT07_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT07_9PHAE)

HSP 1 Score: 224 bits (571), Expect = 7.530e-62
Identity = 159/364 (43.68%), Postives = 201/364 (55.22%), Query Frame = 1 
Query:   10 SSHARDTTAAHVTARRLVVFLQLVLFRGWRPTWWPLAKGPFPENSREASCGRS-EGGRGXXXXXXXXXXXXXXRDAPLSGDEPASECFHTLEVALTPLVLSLLNVA-----------HTSG-TLGLGGGEGAGESARCSSAVEQGTMAVAPATVFAARVEDALLRSVEGQLWEASRQSYGDQGWAVTAATEVDDRRCLCHPRLPYVRWAARLVQAGSGAAGTEVARRVFRAWGVGLRSPSLPLKQHVCAELSRLLDGALAALDLAR----GP-------------GGGVEATVAAS------------QHLRRCLDGLPLRRLRSLARRRLLKEAEDEPMMSRVLQALIDLVATAELAEQVLNK 975
            SS A  T AA   AR+   FLQLVLFRGW P WWPLA       S     G +  GGR                D      EP  ECF +L V +TP+VLSL+  A           H+S  + G   G G G+ +R S  ++Q          F A VE+A+L+SV  QL  A+R  +GD  W+ + A+E+ D  CL +PRL YV WAAR+VQAGSG     V RR+FRAW   LRSPSLP+KQ VCAELSRLLD A+ A+D A     GP             GG  E++  +S              LR+C++ LPL RLRSLA RR+LKE EDEPM+SR LQ+++DLV++AELA +VL +
Sbjct: 5268 SSTALRTRAA---ARQFSSFLQLVLFRGWHPGWWPLADSSSGRWSESLEAGEAGAGGRREDGEKEEEEDRGVLDDK-----EPMPECFRSLPVVITPVVLSLIRAAAAQKAXXSPPAHSSPKSPGTRKGLGLGQPSRSSQQLQQ-------QQPFGAYVEEAMLQSVASQLRLATRIGHGDHAWSPSDASELSDSHCLRYPRLRYVNWAARVVQAGSGT--PTVLRRIFRAWATALRSPSLPVKQQVCAELSRLLDEAVQAVDRAHRAELGPSSAPAAVRAVTAAGGSGESSAFSSGEAVRLQRAAVLNRLRQCVEILPLERLRSLAERRMLKEGEDEPMLSRALQSIVDLVSSAELALRVLRE 5614
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10835.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LCZ5_ECTSI1.380e-6343.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KT07_9PHAE7.530e-6243.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10835contigD-mesarthrocarpus_Contig10835:2382..3439 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LCZ5
PFAMsRCC1
Model size1058
Max annot lvl2759|Eukaryota
KEGG koko:K10614
KEGG Pathwayko04120,map04120
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.27e-64
EggNOG OGsCOG5184@1|root,KOG1426@2759|Eukaryota
EC2.3.2.26
Descriptionguanyl-nucleotide exchange factor activity
Cds size1056
COG categoryDZ
BRITEko00000,ko00001,ko01000,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789216.9505098-CDS-D-mesarthrocarpus_Contig10835:2383..34391680789216.9505098-CDS-D-mesarthrocarpus_Contig10835:2383..3439Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10835 2384..3439 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10835.4.1prot_D-mesarthrocarpus_Contig10835.4.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10835 2384..3439 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10835.4.1

>prot_D-mesarthrocarpus_Contig10835.4.1 ID=prot_D-mesarthrocarpus_Contig10835.4.1|Name=mRNA_D-mesarthrocarpus_Contig10835.4.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=352bp
AAGSSHARDTTAAHVTARRLVVFLQLVLFRGWRPTWWPLAKGPFPENSRE
ASCGRSEGGRGRSTATGAAPEPEPERDAPLSGDEPASECFHTLEVALTPL
VLSLLNVAHTSGTLGLGGGEGAGESARCSSAVEQGTMAVAPATVFAARVE
DALLRSVEGQLWEASRQSYGDQGWAVTAATEVDDRRCLCHPRLPYVRWAA
RLVQAGSGAAGTEVARRVFRAWGVGLRSPSLPLKQHVCAELSRLLDGALA
ALDLARGPGGGVEATVAASQHLRRCLDGLPLRRLRSLARRRLLKEAEDEP
MMSRVLQALIDLVATAELAEQVLNKRGLEEGKEVGKDKKLAGAGAGAGAG
TG
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mRNA from alignment at D-mesarthrocarpus_Contig10835:2382..3439-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10835.4.1 ID=mRNA_D-mesarthrocarpus_Contig10835.4.1|Name=mRNA_D-mesarthrocarpus_Contig10835.4.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1058bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10835:2382..3439- (Discosporangium mesarthrocarpum MT17_79)
GCAGCGGGTAGCAGCCATGCAAGGGACACGACGGCAGCTCATGTGACGGC
AAGGAGGCTGGTCGTGTTCCTGCAGCTGGTGCTGTTCCGGGGCTGGCGGC
CCACTTGGTGGCCCCTCGCCAAGGGACCCTTTCCAGAGAACAGCAGGGAG
GCTTCCTGTGGCCGCTCTGAGGGAGGGAGGGGAAGGTCGACCGCCACTGG
GGCTGCTCCAGAGCCAGAACCGGAGAGAGATGCTCCCCTCAGCGGGGACG
AACCAGCGTCAGAGTGCTTCCACACCCTCGAGGTGGCACTGACCCCACTC
GTCTTGAGCCTGCTCAATGTTGCCCACACCAGCGGTACCCTGGGGCTAGG
TGGGGGAGAAGGAGCAGGGGAAAGCGCGAGGTGTAGCTCCGCCGTGGAGC
AGGGGACGATGGCAGTGGCGCCAGCGACGGTGTTCGCCGCGCGGGTGGAA
GATGCCCTCTTGCGATCGGTCGAGGGGCAGCTGTGGGAGGCCTCCCGGCA
GTCCTACGGGGACCAGGGCTGGGCGGTGACGGCTGCGACGGAGGTGGACG
ACCGCCGCTGCCTTTGCCATCCCCGCCTGCCGTATGTCCGTTGGGCGGCA
CGCTTGGTCCAGGCTGGCTCAGGGGCGGCGGGGACAGAGGTGGCCCGCCG
TGTCTTCCGGGCCTGGGGGGTCGGACTTCGCTCCCCATCTCTTCCCCTCA
AGCAGCATGTCTGTGCCGAGCTCAGTCGGCTGTTGGATGGCGCCCTGGCA
GCGCTGGACCTCGCCCGTGGCCCGGGGGGGGGGGTGGAGGCGACCGTGGC
TGCAAGCCAGCACCTCCGCCGGTGCCTAGATGGGCTACCGCTCCGACGGC
TCCGGTCCCTCGCCCGCCGGCGCTTGCTGAAGGAGGCTGAGGACGAGCCA
ATGATGTCGAGGGTGCTGCAGGCCCTCATTGACCTCGTGGCCACTGCTGA
GTTGGCCGAGCAGGTTCTCAACAAGAGAGGGTTGGAGGAGGGAAAGGAGG
TGGGTAAGGACAAGAAACTCGCCGGGGCAGGAGCAGGAGCAGGGGCTGGG
ACCGGGGC
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10835:2382..3439-

>mRNA_D-mesarthrocarpus_Contig10835.4.1 ID=mRNA_D-mesarthrocarpus_Contig10835.4.1|Name=mRNA_D-mesarthrocarpus_Contig10835.4.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=1056bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10835:2382..3439- (Discosporangium mesarthrocarpum MT17_79)
GCAGCGGGTAGCAGCCATGCAAGGGACACGACGGCAGCTCATGTGACGGC
AAGGAGGCTGGTCGTGTTCCTGCAGCTGGTGCTGTTCCGGGGCTGGCGGC
CCACTTGGTGGCCCCTCGCCAAGGGACCCTTTCCAGAGAACAGCAGGGAG
GCTTCCTGTGGCCGCTCTGAGGGAGGGAGGGGAAGGTCGACCGCCACTGG
GGCTGCTCCAGAGCCAGAACCGGAGAGAGATGCTCCCCTCAGCGGGGACG
AACCAGCGTCAGAGTGCTTCCACACCCTCGAGGTGGCACTGACCCCACTC
GTCTTGAGCCTGCTCAATGTTGCCCACACCAGCGGTACCCTGGGGCTAGG
TGGGGGAGAAGGAGCAGGGGAAAGCGCGAGGTGTAGCTCCGCCGTGGAGC
AGGGGACGATGGCAGTGGCGCCAGCGACGGTGTTCGCCGCGCGGGTGGAA
GATGCCCTCTTGCGATCGGTCGAGGGGCAGCTGTGGGAGGCCTCCCGGCA
GTCCTACGGGGACCAGGGCTGGGCGGTGACGGCTGCGACGGAGGTGGACG
ACCGCCGCTGCCTTTGCCATCCCCGCCTGCCGTATGTCCGTTGGGCGGCA
CGCTTGGTCCAGGCTGGCTCAGGGGCGGCGGGGACAGAGGTGGCCCGCCG
TGTCTTCCGGGCCTGGGGGGTCGGACTTCGCTCCCCATCTCTTCCCCTCA
AGCAGCATGTCTGTGCCGAGCTCAGTCGGCTGTTGGATGGCGCCCTGGCA
GCGCTGGACCTCGCCCGTGGCCCGGGGGGGGGGGTGGAGGCGACCGTGGC
TGCAAGCCAGCACCTCCGCCGGTGCCTAGATGGGCTACCGCTCCGACGGC
TCCGGTCCCTCGCCCGCCGGCGCTTGCTGAAGGAGGCTGAGGACGAGCCA
ATGATGTCGAGGGTGCTGCAGGCCCTCATTGACCTCGTGGCCACTGCTGA
GTTGGCCGAGCAGGTTCTCAACAAGAGAGGGTTGGAGGAGGGAAAGGAGG
TGGGTAAGGACAAGAAACTCGCCGGGGCAGGAGCAGGAGCAGGGGCTGGG
ACCGGG
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