mRNA_D-mesarthrocarpus_Contig10824.3.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10824.3.1
Unique NamemRNA_D-mesarthrocarpus_Contig10824.3.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig10824.3.1 vs. uniprot
Match: A0A6H5JYW5_9PHAE (Helicase ATP-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYW5_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 1.280e-25
Identity = 48/66 (72.73%), Postives = 60/66 (90.91%), Query Frame = 1
Query:    1 NVRRTQRPRALVLVPTRELASQVLEVAKRVSRVAKLSSCAVVGGEDYGKQKRQLAGTVDLIVASPG 198
            ++R+T+RPRA+VLVPTRELA QVLEVAKR+SR  K SSC VVGGEDYGKQ+++LAGTVD++V +PG
Sbjct:   15 SIRQTKRPRAIVLVPTRELAVQVLEVAKRLSRSCKFSSCGVVGGEDYGKQRQRLAGTVDIVVGTPG 80          
BLAST of mRNA_D-mesarthrocarpus_Contig10824.3.1 vs. uniprot
Match: D7FZQ1_ECTSI (DEAD box helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZQ1_ECTSI)

HSP 1 Score: 101 bits (252), Expect = 1.080e-23
Identity = 48/68 (70.59%), Postives = 61/68 (89.71%), Query Frame = 1
Query:    1 NVRRTQRPRALVLVPTRELASQVLEVAKRVSRVAKLSSCAVVGGEDYGKQKRQLAGTVDLIVASPGEV 204
            ++R+T+RPRA+VLVPTRELA QVLEVAKR+SR  K SSC VVGGEDYGKQ+++LAGTVD++V +PG +
Sbjct:   93 SIRQTKRPRAIVLVPTRELAMQVLEVAKRLSRSCKFSSCGVVGGEDYGKQRQRLAGTVDIVVGTPGRL 160          
BLAST of mRNA_D-mesarthrocarpus_Contig10824.3.1 vs. uniprot
Match: A0A6H5KY63_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY63_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 2.020e-23
Identity = 48/68 (70.59%), Postives = 61/68 (89.71%), Query Frame = 1
Query:    1 NVRRTQRPRALVLVPTRELASQVLEVAKRVSRVAKLSSCAVVGGEDYGKQKRQLAGTVDLIVASPGEV 204
            ++R+T+RPRA+VLVPTRELA QVLEVAKR+SR  K SSC VVGGEDYGKQ+++LAGTVD++V +PG +
Sbjct:  210 SIRQTKRPRAIVLVPTRELAVQVLEVAKRLSRSCKFSSCGVVGGEDYGKQRQRLAGTVDIVVGTPGRL 277          
BLAST of mRNA_D-mesarthrocarpus_Contig10824.3.1 vs. uniprot
Match: A0A7S2V6I9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6I9_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 5.140e-22
Identity = 47/68 (69.12%), Postives = 58/68 (85.29%), Query Frame = 1
Query:    1 NVRRTQRPRALVLVPTRELASQVLEVAKRVSRVAKLSSCAVVGGEDYGKQKRQLAGTVDLIVASPGEV 204
            +VR  +RPRA+VLVPTRELA+QVL V K++ R AK+S C+VVGGEDYGKQ R LAGTVDL+VA+PG +
Sbjct:  192 SVRAPKRPRAVVLVPTRELAAQVLAVTKQIGRYAKVSCCSVVGGEDYGKQARALAGTVDLVVATPGRL 259          
BLAST of mRNA_D-mesarthrocarpus_Contig10824.3.1 vs. uniprot
Match: A0A7S2WDP9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WDP9_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 6.490e-20
Identity = 47/66 (71.21%), Postives = 55/66 (83.33%), Query Frame = 1
Query:    7 RRTQRPRALVLVPTRELASQVLEVAKRVSRVAKLSSCAVVGGEDYGKQKRQLAGTVDLIVASPGEV 204
            R  +RPRALVLVPTRELA QVL VAKR+S  AK SSCAVVGG D+G+Q+R LAG VD++VASPG +
Sbjct:  152 RAPKRPRALVLVPTRELAVQVLSVAKRLSHNAKFSSCAVVGGGDHGQQRRALAGVVDVVVASPGRL 217          
BLAST of mRNA_D-mesarthrocarpus_Contig10824.3.1 vs. uniprot
Match: A0A836CEI1_9STRA (DEAD box helicase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEI1_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 2.170e-19
Identity = 44/67 (65.67%), Postives = 54/67 (80.60%), Query Frame = 1
Query:    4 VRRTQRPRALVLVPTRELASQVLEVAKRVSRVAKLSSCAVVGGEDYGKQKRQLAGTVDLIVASPGEV 204
            VR+  RPRALVLVPTRELA+QVL V K+V+  AK+SSC + GGEDYGKQKR+LA   D++V SPG +
Sbjct:   92 VRKPGRPRALVLVPTRELAAQVLGVTKQVAHTAKVSSCGIFGGEDYGKQKRELAACQDVVVGSPGRL 158          
BLAST of mRNA_D-mesarthrocarpus_Contig10824.3.1 vs. uniprot
Match: A0A4D9D2M2_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D2M2_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 5.990e-19
Identity = 44/66 (66.67%), Postives = 54/66 (81.82%), Query Frame = 1
Query:    7 RRTQRPRALVLVPTRELASQVLEVAKRVSRVAKLSSCAVVGGEDYGKQKRQLAGTVDLIVASPGEV 204
            R+T RPRAL+LVPTREL +QVLEV K +S V KLSSC + GGED+G Q+R+L G VDL+VASPG +
Sbjct:  202 RQTCRPRALILVPTRELVTQVLEVIKSLSHVIKLSSCGLHGGEDFGVQRRRLGGMVDLVVASPGRL 267          
BLAST of mRNA_D-mesarthrocarpus_Contig10824.3.1 vs. uniprot
Match: A0A0G4F3L1_VITBC (Uncharacterized protein n=4 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4F3L1_VITBC)

HSP 1 Score: 81.3 bits (199), Expect = 2.270e-16
Identity = 38/68 (55.88%), Postives = 55/68 (80.88%), Query Frame = 1
Query:    1 NVRRTQRPRALVLVPTRELASQVLEVAKRVSRVAKLSSCAVVGGEDYGKQKRQLAGTVDLIVASPGEV 204
            ++RR +RPRAL+L PTREL+ QVLEV +  S++AKLSSC+V+GG+ + KQKR L+  +D++V +PG V
Sbjct:  916 SLRRPKRPRALILSPTRELSQQVLEVLRGSSQLAKLSSCSVIGGDSFAKQKRDLSKILDVVVGTPGRV 983          
BLAST of mRNA_D-mesarthrocarpus_Contig10824.3.1 vs. uniprot
Match: A0A7S4LLS1_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4LLS1_9EUGL)

HSP 1 Score: 77.8 bits (190), Expect = 3.670e-15
Identity = 39/63 (61.90%), Postives = 48/63 (76.19%), Query Frame = 1
Query:   16 QRPRALVLVPTRELASQVLEVAKRVSRVAKLSSCAVVGGEDYGKQKRQLAGTVDLIVASPGEV 204
            +RPRA+V VPTREL  QVL V K +S  AK+SS  VVGGEDYGKQ+R L   VD++VA+PG +
Sbjct:  138 KRPRAIVFVPTRELGQQVLSVLKALSHHAKISSTLVVGGEDYGKQRRALDRPVDVVVATPGRL 200          
BLAST of mRNA_D-mesarthrocarpus_Contig10824.3.1 vs. uniprot
Match: A0A7S1I2D0_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1I2D0_9EUGL)

HSP 1 Score: 77.8 bits (190), Expect = 3.700e-15
Identity = 39/66 (59.09%), Postives = 49/66 (74.24%), Query Frame = 1
Query:    7 RRTQRPRALVLVPTRELASQVLEVAKRVSRVAKLSSCAVVGGEDYGKQKRQLAGTVDLIVASPGEV 204
            R+ QRPRA++ VPTRELA QV+ V K +S  AKLSS  VVGG   G Q+R LAG VD++VA+PG +
Sbjct:  202 RKPQRPRAIIFVPTRELAEQVIGVTKSLSHYAKLSSTMVVGGGSAGNQRRALAGPVDIVVATPGRL 267          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10824.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JYW5_9PHAE1.280e-2572.73Helicase ATP-binding domain-containing protein n=1... [more]
D7FZQ1_ECTSI1.080e-2370.59DEAD box helicase n=1 Tax=Ectocarpus siliculosus T... [more]
A0A6H5KY63_9PHAE2.020e-2370.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2V6I9_9STRA5.140e-2269.12Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S2WDP9_9STRA6.490e-2071.21Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A836CEI1_9STRA2.170e-1965.67DEAD box helicase n=1 Tax=Tribonema minus TaxID=30... [more]
A0A4D9D2M2_9STRA5.990e-1966.67Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A0G4F3L1_VITBC2.270e-1655.88Uncharacterized protein n=4 Tax=Vitrella brassicaf... [more]
A0A7S4LLS1_9EUGL3.670e-1561.90Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A7S1I2D0_9EUGL3.700e-1559.09Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10824contigD-mesarthrocarpus_Contig10824:3093..3296 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FZQ1
PFAMsDEAD,Helicase_C
Model size204
Max annot lvl2759|Eukaryota
KEGG koko:K20096
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.78e-24
EggNOG OGsCOG0513@1|root,KOG0331@2759|Eukaryota
EC3.6.4.13
Descriptionhelicase activity
Cds size204
COG categoryL
BRITEko00000,ko01000,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789216.1071177-CDS-D-mesarthrocarpus_Contig10824:3092..32961680789216.1071177-CDS-D-mesarthrocarpus_Contig10824:3092..3296Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10824 3093..3296 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10824.3.1prot_D-mesarthrocarpus_Contig10824.3.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10824 3093..3296 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10824.3.1

>prot_D-mesarthrocarpus_Contig10824.3.1 ID=prot_D-mesarthrocarpus_Contig10824.3.1|Name=mRNA_D-mesarthrocarpus_Contig10824.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=68bp
NVRRTQRPRALVLVPTRELASQVLEVAKRVSRVAKLSSCAVVGGEDYGKQ
KRQLAGTVDLIVASPGEV
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mRNA from alignment at D-mesarthrocarpus_Contig10824:3093..3296-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10824.3.1 ID=mRNA_D-mesarthrocarpus_Contig10824.3.1|Name=mRNA_D-mesarthrocarpus_Contig10824.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=204bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10824:3093..3296- (Discosporangium mesarthrocarpum MT17_79)
AACGTGCGTCGAACGCAGCGCCCCAGGGCCCTGGTGCTGGTGCCCACACG GGAGCTTGCATCCCAGGTGCTCGAGGTGGCCAAGCGGGTGTCCCGGGTGG CTAAGCTCTCCTCCTGCGCTGTGGTCGGGGGGGAGGATTATGGGAAGCAA AAGAGGCAGCTTGCGGGCACCGTGGACCTCATTGTCGCGTCTCCGGGTGA GGTC
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10824:3093..3296-

>mRNA_D-mesarthrocarpus_Contig10824.3.1 ID=mRNA_D-mesarthrocarpus_Contig10824.3.1|Name=mRNA_D-mesarthrocarpus_Contig10824.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=204bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10824:3093..3296- (Discosporangium mesarthrocarpum MT17_79)
AACGTGCGTCGAACGCAGCGCCCCAGGGCCCTGGTGCTGGTGCCCACACG
GGAGCTTGCATCCCAGGTGCTCGAGGTGGCCAAGCGGGTGTCCCGGGTGG
CTAAGCTCTCCTCCTGCGCTGTGGTCGGGGGGGAGGATTATGGGAAGCAA
AAGAGGCAGCTTGCGGGCACCGTGGACCTCATTGTCGCGTCTCCGGGTGA
GGTC
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