mRNA_D-mesarthrocarpus_Contig10820.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10820.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10820.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10820.1.1 vs. uniprot
Match: A0A6H5JHN3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JHN3_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 2.770e-19
Identity = 38/65 (58.46%), Postives = 49/65 (75.38%), Query Frame = 1 
Query:    1 QVTVVPRYCVVNLLEDQAVWLRQPGSPLSTAVEVDPGGRLPWHWP-SKNEPKGLLLHTAGAAWSY 192
            QVTV+PRYCVVNLL D  +WL++ G+P ++AV + PGGRLPWHW   KN+  G+ + T G AWSY
Sbjct: 2264 QVTVIPRYCVVNLLRDDNIWLKEAGAPEASAVCIPPGGRLPWHWMLGKNKQSGVRVRTEGTAWSY 2328
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BLAST of mRNA_D-mesarthrocarpus_Contig10820.1.1 vs. uniprot
Match: D8LPW3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPW3_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 5.160e-19
Identity = 36/65 (55.38%), Postives = 51/65 (78.46%), Query Frame = 1 
Query:    1 QVTVVPRYCVVNLLEDQAVWLRQPGSPLSTAVEVDPGGRLPWHWP-SKNEPKGLLLHTAGAAWSY 192
            QVTV+PR+C+VNLLED+ +WL++ G+P S+A+ + PGGRLPWHW   +N+  G+ + T G AWSY
Sbjct: 2632 QVTVIPRFCMVNLLEDENIWLKEAGAPESSAICIPPGGRLPWHWMLGRNQRAGVRVRTEGTAWSY 2696
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BLAST of mRNA_D-mesarthrocarpus_Contig10820.1.1 vs. uniprot
Match: A0A6H5L0S6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0S6_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 1.790e-18
Identity = 36/65 (55.38%), Postives = 50/65 (76.92%), Query Frame = 1 
Query:    1 QVTVVPRYCVVNLLEDQAVWLRQPGSPLSTAVEVDPGGRLPWHWP-SKNEPKGLLLHTAGAAWSY 192
            QVTVVPR+C+VNLL D+ +WL++ G+P S+A+ + PGGRLPWHW   +N+  G+ + T G AWSY
Sbjct: 2018 QVTVVPRFCMVNLLGDENIWLKEAGAPESSAIYIPPGGRLPWHWMLGRNQRAGVRVRTEGTAWSY 2082
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BLAST of mRNA_D-mesarthrocarpus_Contig10820.1.1 vs. uniprot
Match: A0A836C8S3_9STRA (Peroxin/Ferlin domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8S3_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 2.970e-9
Identity = 27/62 (43.55%), Postives = 37/62 (59.68%), Query Frame = 1 
Query:    4 VTVVPRYCVVNLLEDQAVWLRQPGSPLSTAVEVDPGGRLPWHWPSKNEPKGLLLHTAGAAWS 189
            VT+VPR+CVVNLL D  + +RQ G+  ++ + V  G   PWHWP     K + L   G+ WS
Sbjct: 2887 VTIVPRFCVVNLLRDGPLLVRQAGAHTASPLCVQAGAHSPWHWPEGRGEKVVELRAMGSDWS 2948
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BLAST of mRNA_D-mesarthrocarpus_Contig10820.1.1 vs. uniprot
Match: A0A0L0D9R2_THETB (Vacuolar protein sorting-associated protein 13C n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0D9R2_THETB)

HSP 1 Score: 56.2 bits (134), Expect = 1.270e-7
Identity = 27/62 (43.55%), Postives = 36/62 (58.06%), Query Frame = 1 
Query:    1 QVTVVPRYCVVNLLEDQAVWLRQPGSPLSTAVEVDPGGRLPWHWPSKNEPKGLLLHTAGAAW 186
            QVTV PR+ +VN + D  V ++Q G+P  T V V  GGR P+HW S    + + L   GA W
Sbjct: 2753 QVTVAPRFVIVNRVADFGVRVQQVGAPEGTGVPVAAGGRTPFHWVSSKLKRHVSLVVEGAGW 2814
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10820.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JHN3_9PHAE2.770e-1958.46Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LPW3_ECTSI5.160e-1955.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L0S6_9PHAE1.790e-1855.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836C8S3_9STRA2.970e-943.55Peroxin/Ferlin domain-containing protein n=1 Tax=T... [more]
A0A0L0D9R2_THETB1.270e-743.55Vacuolar protein sorting-associated protein 13C n=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10820contigD-mesarthrocarpus_Contig10820:1..192 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G938
PFAMsATG_C,Chorein_N,SHR-BD,VPS13,VPS13_C,VPS13_mid_rpt
Model size192
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.46e-20
EggNOG OGsCOG5043@1|root,KOG1809@2759|Eukaryota
Descriptionregulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization
Cds size192
COG categoryU
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789215.8128247-CDS-D-mesarthrocarpus_Contig10820:0..1921680789215.8128247-CDS-D-mesarthrocarpus_Contig10820:0..192Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10820 1..192 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10820.1.1prot_D-mesarthrocarpus_Contig10820.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10820 1..192 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10820.1.1

>prot_D-mesarthrocarpus_Contig10820.1.1 ID=prot_D-mesarthrocarpus_Contig10820.1.1|Name=mRNA_D-mesarthrocarpus_Contig10820.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=64bp
QVTVVPRYCVVNLLEDQAVWLRQPGSPLSTAVEVDPGGRLPWHWPSKNEP
KGLLLHTAGAAWSY
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mRNA from alignment at D-mesarthrocarpus_Contig10820:1..192-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10820.1.1 ID=mRNA_D-mesarthrocarpus_Contig10820.1.1|Name=mRNA_D-mesarthrocarpus_Contig10820.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=192bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10820:1..192- (Discosporangium mesarthrocarpum MT17_79)
CAGGTGACAGTGGTGCCCAGATACTGCGTGGTGAACCTACTAGAAGACCA
GGCAGTGTGGCTGCGCCAGCCGGGATCCCCTCTTTCCACAGCTGTGGAGG
TGGACCCAGGGGGTCGCCTACCCTGGCACTGGCCCAGTAAGAACGAGCCC
AAGGGGCTGCTCCTCCACACAGCTGGTGCGGCCTGGAGCTAT
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10820:1..192-

>mRNA_D-mesarthrocarpus_Contig10820.1.1 ID=mRNA_D-mesarthrocarpus_Contig10820.1.1|Name=mRNA_D-mesarthrocarpus_Contig10820.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=192bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10820:1..192- (Discosporangium mesarthrocarpum MT17_79)
CAGGTGACAGTGGTGCCCAGATACTGCGTGGTGAACCTACTAGAAGACCA
GGCAGTGTGGCTGCGCCAGCCGGGATCCCCTCTTTCCACAGCTGTGGAGG
TGGACCCAGGGGGTCGCCTACCCTGGCACTGGCCCAGTAAGAACGAGCCC
AAGGGGCTGCTCCTCCACACAGCTGGTGCGGCCTGGAGCTAT
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