mRNA_D-mesarthrocarpus_Contig10813.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10813.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10813.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig10813.1.1 vs. uniprot
Match: UPI00077A45EF (ATP-dependent DNA helicase PIF7-like n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077A45EF)

HSP 1 Score: 51.6 bits (122), Expect = 4.650e-5
Identity = 36/125 (28.80%), Postives = 58/125 (46.40%), Query Frame = 1 
Query:    1 PPALPVFMLVDFGG-YVDPSFDEEDARCVPTTHVEVTGSVAGGDILSQCSRRQFPLASCCDYTDAQT-GPNPRH-----GPAERIAGLTYISMIRVKEIDDFMVFTFPFDRSEGSNNTPSVQARL 354
            P  LP+ ++V F   Y+ P+F      CVP   V    +       + C R QFPL      T  ++ G   +      GP+E++AGL Y+++ RV+ I D ++    F+R      T + + RL
Sbjct:  621 PTMLPIAIIVQFDNDYIGPTFCHNTPNCVPIYPVSNCSTQD-----ASCERIQFPLKLAWSITIHKSQGLTLKSCIIDLGPSEKVAGLAYVALSRVRRITDLVIKPMSFERLHLLKKTSNYKFRL 740
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10813.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI00077A45EF4.650e-528.80ATP-dependent DNA helicase PIF7-like n=1 Tax=Acrop... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10813contigD-mesarthrocarpus_Contig10813:1030..1401 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size372
Hectar predicted targeting categoryother localisation
Exons1
Cds size351
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789215.1766224-CDS-D-mesarthrocarpus_Contig10813:1029..13801680789215.1766224-CDS-D-mesarthrocarpus_Contig10813:1029..1380Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10813 1030..1380 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789215.185464-UTR-D-mesarthrocarpus_Contig10813:1380..14011680789215.185464-UTR-D-mesarthrocarpus_Contig10813:1380..1401Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig10813 1381..1401 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10813.1.1prot_D-mesarthrocarpus_Contig10813.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10813 1030..1380 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10813.1.1

>prot_D-mesarthrocarpus_Contig10813.1.1 ID=prot_D-mesarthrocarpus_Contig10813.1.1|Name=mRNA_D-mesarthrocarpus_Contig10813.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=117bp
MLVDFGGYVDPSFDEEDARCVPTTHVEVTGSVAGGDILSQCSRRQFPLAS
CCDYTDAQTGPNPRHGPAERIAGLTYISMIRVKEIDDFMVFTFPFDRSEG
SNNTPSVQARLKDVNN*
back to top

mRNA from alignment at D-mesarthrocarpus_Contig10813:1030..1401-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10813.1.1 ID=mRNA_D-mesarthrocarpus_Contig10813.1.1|Name=mRNA_D-mesarthrocarpus_Contig10813.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=372bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10813:1030..1401- (Discosporangium mesarthrocarpum MT17_79)
CCCCCTGCACTGCCTGTTTTTATGCTGGTGGACTTTGGTGGTTACGTTGA
CCCTTCTTTCGATGAGGAGGATGCAAGATGTGTTCCCACTACCCATGTCG
AAGTCACTGGGTCTGTAGCAGGGGGCGACATCTTGTCGCAATGCTCCCGG
CGGCAGTTTCCACTCGCCTCCTGTTGTGACTATACCGATGCACAAACAGG
GCCAAACCCTCGACACGGGCCTGCAGAGAGAATAGCAGGACTGACCTATA
TCTCTATGATTAGAGTGAAAGAGATAGACGATTTTATGGTTTTTACCTTT
CCCTTTGACAGGAGCGAGGGATCGAACAACACGCCCTCCGTTCAGGCTAG
GCTAAAAGATGTAAACAATTGA
back to top

Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10813:1030..1401-

>mRNA_D-mesarthrocarpus_Contig10813.1.1 ID=mRNA_D-mesarthrocarpus_Contig10813.1.1|Name=mRNA_D-mesarthrocarpus_Contig10813.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=351bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10813:1030..1401- (Discosporangium mesarthrocarpum MT17_79)
ATGCTGGTGGACTTTGGTGGTTACGTTGACCCTTCTTTCGATGAGGAGGA
TGCAAGATGTGTTCCCACTACCCATGTCGAAGTCACTGGGTCTGTAGCAG
GGGGCGACATCTTGTCGCAATGCTCCCGGCGGCAGTTTCCACTCGCCTCC
TGTTGTGACTATACCGATGCACAAACAGGGCCAAACCCTCGACACGGGCC
TGCAGAGAGAATAGCAGGACTGACCTATATCTCTATGATTAGAGTGAAAG
AGATAGACGATTTTATGGTTTTTACCTTTCCCTTTGACAGGAGCGAGGGA
TCGAACAACACGCCCTCCGTTCAGGCTAGGCTAAAAGATGTAAACAATTG
A
back to top