mRNA_D-mesarthrocarpus_Contig10801.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10801.2.1
Unique NamemRNA_D-mesarthrocarpus_Contig10801.2.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10801.2.1 vs. uniprot
Match: D8LBZ5_ECTSI (Spindle pole body component n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBZ5_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 9.060e-17
Identity = 36/54 (66.67%), Postives = 45/54 (83.33%), Query Frame = 1 
Query:    1 QGELFPRLASIKHYFLLDRGDLFEHFMDVAEEELNTAVDQISIPRMESLLYLAV 162
            +G+L PRL SIKHYFLLDRGD FEH +D AE EL+  + QIS+PR+ESLL+L+V
Sbjct:  942 EGQLLPRLESIKHYFLLDRGDFFEHLLDCAETELDKVIPQISVPRLESLLHLSV 995
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BLAST of mRNA_D-mesarthrocarpus_Contig10801.2.1 vs. uniprot
Match: M4BRC2_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BRC2_HYAAE)

HSP 1 Score: 72.0 bits (175), Expect = 2.210e-13
Identity = 32/53 (60.38%), Postives = 43/53 (81.13%), Query Frame = 1 
Query:    1 QGELFPRLASIKHYFLLDRGDLFEHFMDVAEEELNTAVDQISIPRMESLLYLA 159
            + +L  RLAS+KHYFL+D+GD F  FMDVAEEEL    D++S+PR+ESLL+L+
Sbjct:  805 ENDLENRLASLKHYFLMDQGDFFVDFMDVAEEELKLRADKLSLPRLESLLHLS 857
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BLAST of mRNA_D-mesarthrocarpus_Contig10801.2.1 vs. uniprot
Match: A0A3Q3E6X1_HIPCM (Gamma-tubulin complex component n=6 Tax=Syngnathidae TaxID=72045 RepID=A0A3Q3E6X1_HIPCM)

HSP 1 Score: 71.6 bits (174), Expect = 3.020e-13
Identity = 33/53 (62.26%), Postives = 40/53 (75.47%), Query Frame = 1 
Query:    1 QGELFPRLASIKHYFLLDRGDLFEHFMDVAEEELNTAVDQISIPRMESLLYLA 159
            + EL  RL SIKHYFL+D+GD F HFMD+ EEEL   VD I+ PR+E+LL LA
Sbjct:  507 EKELVARLRSIKHYFLMDKGDFFVHFMDLTEEELRKPVDDIAAPRLEALLELA 559
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BLAST of mRNA_D-mesarthrocarpus_Contig10801.2.1 vs. uniprot
Match: A0A5C6PTC0_9TELE (Gamma-tubulin complex component 2 n=1 Tax=Takifugu flavidus TaxID=433684 RepID=A0A5C6PTC0_9TELE)

HSP 1 Score: 70.5 bits (171), Expect = 7.730e-13
Identity = 34/53 (64.15%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:    1 QGELFPRLASIKHYFLLDRGDLFEHFMDVAEEELNTAVDQISIPRMESLLYLA 159
            + EL  RL SIKHYFLLD+GD F HFMD+ EEEL   VD I  PR+E+LL LA
Sbjct:  543 EKELVSRLRSIKHYFLLDKGDFFVHFMDLTEEELKKPVDDIVPPRLEALLELA 595
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BLAST of mRNA_D-mesarthrocarpus_Contig10801.2.1 vs. uniprot
Match: UPI0015AFD9A0 (gamma-tubulin complex component 2 isoform X1 n=2 Tax=Anguilla anguilla TaxID=7936 RepID=UPI0015AFD9A0)

HSP 1 Score: 70.1 bits (170), Expect = 1.050e-12
Identity = 33/53 (62.26%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:    1 QGELFPRLASIKHYFLLDRGDLFEHFMDVAEEELNTAVDQISIPRMESLLYLA 159
            + EL  RL SIKHYFL+D+GD F HFMD+ EEEL   VD I  PR+E+LL LA
Sbjct:  506 EKELVTRLRSIKHYFLMDKGDFFVHFMDLTEEELKKPVDDIISPRLEALLELA 558
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BLAST of mRNA_D-mesarthrocarpus_Contig10801.2.1 vs. uniprot
Match: G4YPB7_PHYSP (Spindle pole body component n=3 Tax=Phytophthora TaxID=4783 RepID=G4YPB7_PHYSP)

HSP 1 Score: 70.1 bits (170), Expect = 1.050e-12
Identity = 31/53 (58.49%), Postives = 42/53 (79.25%), Query Frame = 1 
Query:    1 QGELFPRLASIKHYFLLDRGDLFEHFMDVAEEELNTAVDQISIPRMESLLYLA 159
            + +L  RL S+KHYFL+D+GD F  FMDVAEEEL    D++S+PR+ESLL+L+
Sbjct:  596 ENDLQNRLISLKHYFLMDQGDFFVDFMDVAEEELKLRADKLSLPRLESLLHLS 648
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BLAST of mRNA_D-mesarthrocarpus_Contig10801.2.1 vs. uniprot
Match: A0A6G0PDJ8_9STRA (Gamma-tubulin complex component 2 n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0PDJ8_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 1.060e-12
Identity = 31/53 (58.49%), Postives = 42/53 (79.25%), Query Frame = 1 
Query:    1 QGELFPRLASIKHYFLLDRGDLFEHFMDVAEEELNTAVDQISIPRMESLLYLA 159
            + +L  RL S+KHYFL+D+GD F  FMDVAEEEL    D++S+PR+ESLL+L+
Sbjct:  802 ENDLQNRLISLKHYFLMDQGDFFVDFMDVAEEELKLRADKLSLPRLESLLHLS 854
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BLAST of mRNA_D-mesarthrocarpus_Contig10801.2.1 vs. uniprot
Match: A0A6G0S3R2_9STRA (Gamma-tubulin complex component 2 n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0S3R2_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 1.060e-12
Identity = 31/53 (58.49%), Postives = 42/53 (79.25%), Query Frame = 1 
Query:    1 QGELFPRLASIKHYFLLDRGDLFEHFMDVAEEELNTAVDQISIPRMESLLYLA 159
            + +L  RL S+KHYFL+D+GD F  FMDVAEEEL    D++S+PR+ESLL+L+
Sbjct:  772 ENDLQNRLISLKHYFLMDQGDFFVDFMDVAEEELKLRADKLSLPRLESLLHLS 824
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BLAST of mRNA_D-mesarthrocarpus_Contig10801.2.1 vs. uniprot
Match: A0A6A3NRQ6_9STRA (Gamma-tubulin complex component 2 n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3NRQ6_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 1.060e-12
Identity = 31/53 (58.49%), Postives = 42/53 (79.25%), Query Frame = 1 
Query:    1 QGELFPRLASIKHYFLLDRGDLFEHFMDVAEEELNTAVDQISIPRMESLLYLA 159
            + +L  RL S+KHYFL+D+GD F  FMDVAEEEL    D++S+PR+ESLL+L+
Sbjct:  802 ENDLQNRLISLKHYFLMDQGDFFVDFMDVAEEELKLRADKLSLPRLESLLHLS 854
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig10801.2.1 vs. uniprot
Match: A0A673KY90_9TELE (Gamma-tubulin complex component n=1 Tax=Sinocyclocheilus rhinocerous TaxID=307959 RepID=A0A673KY90_9TELE)

HSP 1 Score: 69.7 bits (169), Expect = 1.430e-12
Identity = 33/53 (62.26%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:    1 QGELFPRLASIKHYFLLDRGDLFEHFMDVAEEELNTAVDQISIPRMESLLYLA 159
            + EL  RL SIKHYFL+D+GD F HFMD+ EEEL   VD I  PR+E+LL LA
Sbjct:  370 EKELVSRLRSIKHYFLMDKGDFFVHFMDLTEEELKKPVDDIIPPRLEALLELA 422
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10801.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBZ5_ECTSI9.060e-1766.67Spindle pole body component n=1 Tax=Ectocarpus sil... [more]
M4BRC2_HYAAE2.210e-1360.38Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
A0A3Q3E6X1_HIPCM3.020e-1362.26Gamma-tubulin complex component n=6 Tax=Syngnathid... [more]
A0A5C6PTC0_9TELE7.730e-1364.15Gamma-tubulin complex component 2 n=1 Tax=Takifugu... [more]
UPI0015AFD9A01.050e-1262.26gamma-tubulin complex component 2 isoform X1 n=2 T... [more]
G4YPB7_PHYSP1.050e-1258.49Spindle pole body component n=3 Tax=Phytophthora T... [more]
A0A6G0PDJ8_9STRA1.060e-1258.49Gamma-tubulin complex component 2 n=1 Tax=Phytopht... [more]
A0A6G0S3R2_9STRA1.060e-1258.49Gamma-tubulin complex component 2 n=1 Tax=Phytopht... [more]
A0A6A3NRQ6_9STRA1.060e-1258.49Gamma-tubulin complex component 2 n=2 Tax=Phytopht... [more]
A0A673KY90_9TELE1.430e-1262.26Gamma-tubulin complex component n=1 Tax=Sinocycloc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10801contigD-mesarthrocarpus_Contig10801:2065..3107 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LBZ5
PFAMsSpc97_Spc98
Model size162
Max annot lvl2759|Eukaryota
KEGG koko:K16569
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000226,GO:0000278,GO:0000280,GO:0000923,GO:0000928,GO:0000930,GO:0003674,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005815,GO:0005816,GO:0005822,GO:0005824,GO:0005856,GO:0006996,GO:0007010,GO:0007017,GO:0007020,GO:0007049,GO:0007051,GO:0007052,GO:0008092,GO:0008150,GO:0008275,GO:0009987,GO:0015630,GO:0015631,GO:0016043,GO:0022402,GO:0022414,GO:0022607,GO:0031109,GO:0031122,GO:0032153,GO:0032155,GO:0032991,GO:0034622,GO:0043015,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044450,GO:0044464,GO:0046785,GO:0048285,GO:0051225,GO:0051258,GO:0051321,GO:0051415,GO:0051418,GO:0065003,GO:0070925,GO:0071840,GO:0090307,GO:0097435,GO:0140014,GO:1902850,GO:1903047
Exons2
Evalue1.49e-17
EggNOG OGsKOG2001@1|root,KOG2001@2759|Eukaryota
Descriptionmicrotubule nucleation by interphase microtubule organizing center
Cds size162
COG categoryH
BRITEko00000,ko03036,ko04147,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789214.130716-CDS-D-mesarthrocarpus_Contig10801:2064..21061680789214.130716-CDS-D-mesarthrocarpus_Contig10801:2064..2106Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10801 2065..2106 -
1680789214.1425152-CDS-D-mesarthrocarpus_Contig10801:2987..31071680789214.1425152-CDS-D-mesarthrocarpus_Contig10801:2987..3107Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10801 2988..3107 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10801.2.1prot_D-mesarthrocarpus_Contig10801.2.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10801 2065..3107 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10801.2.1

>prot_D-mesarthrocarpus_Contig10801.2.1 ID=prot_D-mesarthrocarpus_Contig10801.2.1|Name=mRNA_D-mesarthrocarpus_Contig10801.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=54bp
QGELFPRLASIKHYFLLDRGDLFEHFMDVAEEELNTAVDQISIPRMESLL
YLAV
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mRNA from alignment at D-mesarthrocarpus_Contig10801:2065..3107-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10801.2.1 ID=mRNA_D-mesarthrocarpus_Contig10801.2.1|Name=mRNA_D-mesarthrocarpus_Contig10801.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1043bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10801:2065..3107- (Discosporangium mesarthrocarpum MT17_79)
CAGGGTGAGCTCTTCCCCCGCCTGGCCTCTATCAAGCACTACTTCTTGCT
GGACAGGGGGGATCTCTTCGAGCACTTCATGGATGTGGCAGAGGAGGAGC
TGAACACTGCGGTGGACCAGGTGTTTGGTTGTGGTGCACTGTGCAGCGCC
AAGTCTTCTGCTGAGTGTCCTGTCTCAGTCTGTGCTCCGGTTTTTGTTAC
GAGCGTCTGAGCCTGTTTTTTTTTTTTGCCATTCGCGGCGCTGACCGCGC
ACACCATCCAGGTGCTGTGATGACGGCATGGGAATGTCCCTGCGGTCTGT
GTTCTTTCAAGGTACAGCAGTGGTAATTTCTGCCGTGCTGTAGGGGTCCT
TCCTACTGGTTCTCTTCTACAGTAGGGACCTTCTCTACAGTGTTTTGACA
CGTCTCTGCTCGTTGTGCAACTGCGCGGAAGAGTCATCGGAAGAGTTGAT
CACGGAAGGGCGGCTGACGTTAACCTTGAAGTTGCACACTCTTGAAGTTG
CACGCGTTCGAGGATGGCCAACGTCTCTTGCAGAAAAAAAAAGGGCGTGG
TACAGAGCACAACGTGCCCGGGTATTTTTTTTTTTATTCCCCGAAGCATT
TGTTTTTTTGTTTTTCACACACCAAAATCGAAGATGTCTGGGAGTACCAC
CCTACTTGACCGTTTTGAAATCTCAGCTAACTGGGCCACTGCTGTATTTT
CTGTACCTTTTTTCCTCCCCTGTGGTTAGGTAAACCCCTCCCCCCTGTGG
TTAGGTAAACACTTCCCCCTGTGGTTAGGTAAACACTTCCCCCTGTGGTT
AGGTAAACCATCCCCCCTGTGGGTAGGTAAACGCTCTTCAGCGGTGAGGC
CTCACAGCAATCCTGATTCTGATGAAGCATTTCTGATTGGGTCCTTGCTC
CTTCCTTGCAGCAGGACTTTTTGCCCTCCTTTTTCCCTATTTCTCAAGTC
ACTGCTGCAACAACTACCTCCCCTCCCCCCTCCTGTCCTCTGGGTGCACA
GATCTCTATCCCCCGCATGGAGTCACTGCTTTACCTGGCAGTT
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10801:2065..3107-

>mRNA_D-mesarthrocarpus_Contig10801.2.1 ID=mRNA_D-mesarthrocarpus_Contig10801.2.1|Name=mRNA_D-mesarthrocarpus_Contig10801.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=162bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10801:2065..3107- (Discosporangium mesarthrocarpum MT17_79)
CAGGGTGAGCTCTTCCCCCGCCTGGCCTCTATCAAGCACTACTTCTTGCT
GGACAGGGGGGATCTCTTCGAGCACTTCATGGATGTGGCAGAGGAGGAGC
TGAACACTGCGGTGGACCAGATCTCTATCCCCCGCATGGAGTCACTGCTT
TACCTGGCAGTT
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