mRNA_D-mesarthrocarpus_Contig10798.3.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10798.3.1
Unique NamemRNA_D-mesarthrocarpus_Contig10798.3.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig10798.3.1 vs. uniprot
Match: D7FQ28_ECTSI (Similar to calcyphosine-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ28_ECTSI)

HSP 1 Score: 138 bits (348), Expect = 4.500e-35
Identity = 79/181 (43.65%), Postives = 122/181 (67.40%), Query Frame = 1 
Query:    1 QVLMLLNSYYLAFYAIYFVAQALEEPSTYFWIIVLPAPILLGVVVAYRRMLPIYALLAAVV---ENDIVAADKESDIADKVRRKVVTKVQEKLSIRIIVAAGHPLRKTCMERDYAELLLEEWDLNHDKTIDTEELLRGLENFEVNLTFQQQREFMRLADPDRSGSIDVLELADLLYDIGQE 534
            ++LMLLNSYYLAFYA+YF+++A +  + + WIIVLP PIL GV++AYRR+LP+ ALL+ +V     D+   ++E++  +K+RRK+V +V++ L       A     +   +   A  LL+ WD + +  +  +EL +GLE   + L+ +Q+RE +RLADPDRSG +D+ ELA+LLYD+  E
Sbjct:  331 EILMLLNSYYLAFYAVYFISRASKSETEWVWIIVLPLPILAGVLMAYRRVLPLIALLSTIVMMQPTDVADVEQEAEELNKLRRKLVMRVEDVLEQEFKACAESGETRADGQTS-AAFLLKRWDEDDNGNLSHQELHKGLEEIGLLLSSKQRRELIRLADPDRSGGVDIKELAELLYDVEVE 510
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig10798.3.1 vs. uniprot
Match: A0A6H5JCN8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCN8_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 1.860e-18
Identity = 49/109 (44.95%), Postives = 76/109 (69.72%), Query Frame = 1 
Query:    1 QVLMLLNSYYLAFYAIYFVAQALEEPSTYFWIIVLPAPILLGVVVAYRRMLPIYALLAAVV---ENDIVAADKESDIADKVRRKVVTKVQEKLSIRIIVAAGHPLRKTC 318
            ++LMLLNSYYLAFYA+YF+++A +  + + WIIVLP PIL GV++AYRR+LP+ ALL+ +V     D+   ++E++  +K+RRK+V +V++ L      +     R TC
Sbjct:  456 EILMLLNSYYLAFYAVYFISRASKSDTEWVWIIVLPLPILAGVLMAYRRVLPLIALLSTIVMMQPTDVADVEQEAEELNKLRRKLVMRVEDVLEQEFKASLRRERRDTC 564
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10798.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FQ28_ECTSI4.500e-3543.65Similar to calcyphosine-like protein n=1 Tax=Ectoc... [more]
A0A6H5JCN8_9PHAE1.860e-1844.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10798contigD-mesarthrocarpus_Contig10798:1218..3985 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size534
Hectar predicted targeting categorysignal peptide
Exons4
Ec32 ortholog descriptionEF-hand domain pair
Ec32 orthologEc-01_007690.1
Cds size525
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789212.936676-CDS-D-mesarthrocarpus_Contig10798:1217..13501680789212.936676-CDS-D-mesarthrocarpus_Contig10798:1217..1350Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10798 1218..1350 -
1680789212.9538608-CDS-D-mesarthrocarpus_Contig10798:1764..18801680789212.9538608-CDS-D-mesarthrocarpus_Contig10798:1764..1880Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10798 1765..1880 -
1680789212.963831-CDS-D-mesarthrocarpus_Contig10798:2916..29911680789212.963831-CDS-D-mesarthrocarpus_Contig10798:2916..2991Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10798 2917..2991 -
1680789212.9767604-CDS-D-mesarthrocarpus_Contig10798:3775..39761680789212.9767604-CDS-D-mesarthrocarpus_Contig10798:3775..3976Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10798 3776..3976 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789212.993668-UTR-D-mesarthrocarpus_Contig10798:3976..39851680789212.993668-UTR-D-mesarthrocarpus_Contig10798:3976..3985Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig10798 3977..3985 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10798.3.1prot_D-mesarthrocarpus_Contig10798.3.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10798 1218..3976 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10798.3.1

>prot_D-mesarthrocarpus_Contig10798.3.1 ID=prot_D-mesarthrocarpus_Contig10798.3.1|Name=mRNA_D-mesarthrocarpus_Contig10798.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=175bp
MLLNSYYLAFYAIYFVAQALEEPSTYFWIIVLPAPILLGVVVAYRRMLPI
YALLAAVVENDIVAADKESDIADKVRRKVVTKVQEKLSIRIIVAAGHPLR
KTCMERDYAELLLEEWDLNHDKTIDTEELLRGLENFEVNLTFQQQREFMR
LADPDRSGSIDVLELADLLYDIGQE
back to top

mRNA from alignment at D-mesarthrocarpus_Contig10798:1218..3985-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10798.3.1 ID=mRNA_D-mesarthrocarpus_Contig10798.3.1|Name=mRNA_D-mesarthrocarpus_Contig10798.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=2768bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10798:1218..3985- (Discosporangium mesarthrocarpum MT17_79)
CAGGTCCTGATGCTGCTCAATTCATACTATCTGGCGTTCTATGCTATCTA
CTTTGTTGCCCAAGCCCTTGAGGAGCCATCGACCTACTTCTGGATCATAG
TTCTGCCGGCACCAATCCTATTGGGGGTGGTGGTGGCATACCGCCGTATG
CTTCCCATCTATGCCCTCCTGGCGGCTGTAGTGGAGAACGATATAGTGGC
TGCAGACAAGGTGCTGTACCGTGCAGAGATCACAGCATAGTGAGGGCAAT
TGCTCTCCCCCCTTTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGTGTGTG
TCTTGTTCAGGGGTCATTCCTCTTGTGGACCTCCAGGGGTTATCGTTCAG
TAGATCAGCTGTGGTGGTGATGTTGTCTGACTGACATGCGACCAACTTGT
GGTCCTTTTTCCTGAGCTCATCCCATGGAAAGCTCTTTCAAGCACGATGG
GTTTTGTGAAGGGAAGGGTACGTCGTAGTATGTGCTCTGTGGCTCTCGTG
GCTGGGCTCAGCCCAGCACCGCTACTGCTGCTGCTGCCATGGATGTAGGT
GTCTGTGTGCCTGTTGGGGCTAAGGATGCGGACCTTGTGATTTCTCAGCC
CTAAGCCTTTTGTGTGCCAGCATGTTGGCATGGTATTGCGCTACATAACC
CAGAGCTATTCACCAGAGCACTTCACAAGTAGGGGCGCTCTGGGCAGTTG
CTATAGTGGCCAAAAAATGGGGTGCTTTTCTACCTTGTCAGGCGTAGAGC
TGATGGTTCCTTGGGGAGGTGAGTGGTATCCCATGTGGTACCAGAGAGGC
AGAGGATAGGTTCGCTTTGTTTGTGGACACCCCTAAGCTGGTCTCTTGCC
ATACCTAACCTTTTCTGTGAGCATGTGTGTGACCATGGAATGTCGTGGCC
ATTACCACTTTGTGATAACCTCATCTATGTGCCTGCCATGACATGAAAGC
CTGTGGATGCTGACTTGTGGGTGTGAATTCGGCAGGTGAGCAAGGAGAGC
GACATCGCGGACAAAGTGCGGCGGAAGGTGGTGACCAAAGTCCAGGAGAA
GCTCTCCATCAGAATCATTGTGAGAATTCTGTTCATTCTGAAGTCAAGTA
CCACTGGTAGTCCTTTGATTTCCATCTTGCAGCCGAGTCCATATAGTAAC
GTGCCTTCTCACGTGTTGAATAAAGCTGGCATGCCCTCCTCGGTTAGGGG
ATAAAGACATCTTGCCATTGAGTGCAGCAGTCAGCCTGGATCTCTCTAGA
TGACACAGAGAGGCCATCTCTCACACTGAACGAAAATATTTGGCTGCTAA
GTCCTCAAACTCCAAGCCTAGCGGGCCATACAAGCAGAGTAGCCCAGAAT
TTCGAATTACTGTCGTGAGATGTTTTCAAGTTTTCTTGCAGGATGTTTCT
TCTTTTAGCTCTTCCTCGAACACAGCATGAGGACTGCTAGTGTTATGAAT
CATTTCTGCGAACCTTGGGCCAAGCTATGCCTGGAACGTGGCTTGAAAAG
CTCAGGCTTTTTGGAGTGCTGTTTTTTAGTGCATGAATGAAGAACAATTT
GTTTGGCAAGAGTTGTTCAGGATAAGAGATGGCCTAATAGGGACAGGGAC
ACACTTCTGGCAAGGGGTTTATTAAACGTAGCACATGGTATATTACAGAA
CTCTACAGAACAGTTGCAGTACTACTACAGCAGTCACTTGTACTCTCTGT
ATCTTGTCTTTTTTCGTTTGTGTAAGTTCAATTGTAGAGCATATATTCAT
GATGCTCTTCCGGCCTACAGATTTGGCTTGGTCCTTCTGTCCCCAACAGT
TTTTTTGCCTCATGTCTGCCCTGTTCTTGTGGAGTGGGCGTCCACTCTAT
CTGTGCCGATGTGGACAGGATCAACCTCTGTTGTCTCTTTATGCGAGAGT
ACAGACCTGCCAAGCATAGCTCAGTGGTGAGTTCTTCCAAACACCTTGTG
TTGGGGGGAGACGTTTTGTTCTTGATCTTCCCCCCCCCTGCACTGATGTT
GGCTTCGAAGTACTGCACAACGTACGTTCTTTGTCAAGAGCTTTATTTAC
CTCTTGCTTTCGTCGCTCCCCCGGTACCTGGGTGCAGGAGAGACGCGCGT
CTAAGGTGGCTGCAGGTCATCCACTGAGAAAAACGTGCATGGAAAGGGAC
TACGCAGAGCTGCTGTTGGAGGAGTGGGACCTGAACCACGACAAGACCAT
TGACACTGAGGAGCTTCTGCGGTAGGTCTTTCTTTCTTTCTTGCATGCCG
AGGGGTGGGCTAGAGGTGTTTACTCTGGGCTACATTTGATGGGTTCCTTC
CCTGTGGCGAAAACGCCTCCACCGGTGTGGTTTGTTCCCTGTCAAAAAAA
AAAAACCCTTCACAGAATTGTTCTGCTTTTTTTTTTTTGCTGAGCTAAGC
AGAACAGGTTTCGTGGAGATATTAGCCAAGCCAGTATGGGAGCCCTTTTG
GTCACTGGGGAGTTCCATACCATTTATTCAGTCATGCATGAAGTCAGAAA
CACACCTTGACTTCCCGCCCTCGCCCCCCTGCTTCCCGCCCCCCACCTCC
CCATCCTTCCCGCTCCGCTTCCCCCGCCGCGGCCCCCTGTGTGTGTGTGC
ATATGCCGGATGCCCAACCATCCCCCATCGCCTAGTGGGCTCGAAAACTT
CGAGGTGAACCTCACCTTCCAGCAGCAGAGGGAGTTCATGCGGCTCGCAG
ACCCCGATCGCAGTGGCAGCATTGATGTCCTAGAGCTGGCTGACCTCCTA
TATGACATTGGTCAGGAG
back to top

Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10798:1218..3985-

>mRNA_D-mesarthrocarpus_Contig10798.3.1 ID=mRNA_D-mesarthrocarpus_Contig10798.3.1|Name=mRNA_D-mesarthrocarpus_Contig10798.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=525bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10798:1218..3985- (Discosporangium mesarthrocarpum MT17_79)
ATGCTGCTCAATTCATACTATCTGGCGTTCTATGCTATCTACTTTGTTGC
CCAAGCCCTTGAGGAGCCATCGACCTACTTCTGGATCATAGTTCTGCCGG
CACCAATCCTATTGGGGGTGGTGGTGGCATACCGCCGTATGCTTCCCATC
TATGCCCTCCTGGCGGCTGTAGTGGAGAACGATATAGTGGCTGCAGACAA
GGAGAGCGACATCGCGGACAAAGTGCGGCGGAAGGTGGTGACCAAAGTCC
AGGAGAAGCTCTCCATCAGAATCATTGTGGCTGCAGGTCATCCACTGAGA
AAAACGTGCATGGAAAGGGACTACGCAGAGCTGCTGTTGGAGGAGTGGGA
CCTGAACCACGACAAGACCATTGACACTGAGGAGCTTCTGCGTGGGCTCG
AAAACTTCGAGGTGAACCTCACCTTCCAGCAGCAGAGGGAGTTCATGCGG
CTCGCAGACCCCGATCGCAGTGGCAGCATTGATGTCCTAGAGCTGGCTGA
CCTCCTATATGACATTGGTCAGGAG
back to top