mRNA_D-mesarthrocarpus_Contig10797.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10797.2.1
Unique NamemRNA_D-mesarthrocarpus_Contig10797.2.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10797.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10797contigD-mesarthrocarpus_Contig10797:3745..3972 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LJG5
PFAMszf-C3HC4_3
Model size228
Max annot lvl2759|Eukaryota
KEGG koko:K17592
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0006457,GO:0008150,GO:0009987,GO:0030424,GO:0030425,GO:0030544,GO:0031072,GO:0036477,GO:0042995,GO:0043005,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044087,GO:0044424,GO:0044444,GO:0044463,GO:0044464,GO:0044877,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051087,GO:0051128,GO:0051129,GO:0065007,GO:0070628,GO:0070852,GO:0090083,GO:0090084,GO:0097447,GO:0097458,GO:0120025,GO:0120038
Exons1
Evalue2.22e-15
EggNOG OGs28IDA@1|root,2QQPY@2759|Eukaryota
Descriptionnegative regulation of inclusion body assembly
Cds size228
COG categoryS
BRITEko00000,ko01009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789212.8990607-CDS-D-mesarthrocarpus_Contig10797:3744..39721680789212.8990607-CDS-D-mesarthrocarpus_Contig10797:3744..3972Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10797 3745..3972 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10797.2.1prot_D-mesarthrocarpus_Contig10797.2.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10797 3745..3972 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10797.2.1

>prot_D-mesarthrocarpus_Contig10797.2.1 ID=prot_D-mesarthrocarpus_Contig10797.2.1|Name=mRNA_D-mesarthrocarpus_Contig10797.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=76bp
STSARVAPPDRVRPESDMWQCSSRLGVLRGSINSRALMMAFGWDRPVGGK
VAAVQLSALSQKFKVGLLYRYAFIA*
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mRNA from alignment at D-mesarthrocarpus_Contig10797:3745..3972-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10797.2.1 ID=mRNA_D-mesarthrocarpus_Contig10797.2.1|Name=mRNA_D-mesarthrocarpus_Contig10797.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=228bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10797:3745..3972- (Discosporangium mesarthrocarpum MT17_79)
TCCACCTCTGCCAGGGTTGCACCCCCAGATAGAGTGCGGCCTGAGTCCGA
CATGTGGCAGTGCAGCTCGCGTTTGGGGGTACTCCGTGGGAGCATCAACA
GCCGCGCCTTGATGATGGCATTTGGGTGGGACAGGCCAGTCGGGGGCAAG
GTGGCAGCGGTGCAGCTATCGGCCCTCTCCCAGAAGTTCAAGGTAGGTCT
ACTGTATAGGTATGCTTTTATTGCTTGA
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10797:3745..3972-

>mRNA_D-mesarthrocarpus_Contig10797.2.1 ID=mRNA_D-mesarthrocarpus_Contig10797.2.1|Name=mRNA_D-mesarthrocarpus_Contig10797.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=228bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10797:3745..3972- (Discosporangium mesarthrocarpum MT17_79)
TCCACCTCTGCCAGGGTTGCACCCCCAGATAGAGTGCGGCCTGAGTCCGA
CATGTGGCAGTGCAGCTCGCGTTTGGGGGTACTCCGTGGGAGCATCAACA
GCCGCGCCTTGATGATGGCATTTGGGTGGGACAGGCCAGTCGGGGGCAAG
GTGGCAGCGGTGCAGCTATCGGCCCTCTCCCAGAAGTTCAAGGTAGGTCT
ACTGTATAGGTATGCTTTTATTGCTTGA
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