mRNA_D-mesarthrocarpus_Contig1079.6.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig1079.6.1
Unique NamemRNA_D-mesarthrocarpus_Contig1079.6.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig1079.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig1079contigD-mesarthrocarpus_Contig1079:11420..13303 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1620
Hectar predicted targeting categoryother localisation
Exons2
Cds size1608
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789212.1993747-CDS-D-mesarthrocarpus_Contig1079:11419..125051680789212.1993747-CDS-D-mesarthrocarpus_Contig1079:11419..12505Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1079 11420..12505 -
1680789212.2146585-CDS-D-mesarthrocarpus_Contig1079:12771..132931680789212.2146585-CDS-D-mesarthrocarpus_Contig1079:12771..13293Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1079 12772..13293 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789212.2240844-UTR-D-mesarthrocarpus_Contig1079:13293..133031680789212.2240844-UTR-D-mesarthrocarpus_Contig1079:13293..13303Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig1079 13294..13303 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig1079.6.1prot_D-mesarthrocarpus_Contig1079.6.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig1079 11420..13293 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig1079.6.1

>prot_D-mesarthrocarpus_Contig1079.6.1 ID=prot_D-mesarthrocarpus_Contig1079.6.1|Name=mRNA_D-mesarthrocarpus_Contig1079.6.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=536bp
MLENQQISGEDQPPTPEGSELNRGQCSASLPVVTPHLSEPGPFYSFPSNF
VMGPLTDLTMEPISLGPTSSSLSQSERKERLGGGEGDGCMETPGGTSSAH
VPPSPGRPSRMSSTCRVVTARAACEVSNITATPKSKRRTEYQTAYKAKRR
LEERTKKFECNKQKRQVYIDRLYKILEKDAYEDIVIWDTPATSRAPPSGL
TALPTAPSDLRSCPPVTPTPTTHMPETPVVMTRTAATTASSACGGMTFPA
AMTTPLPAPTSAGLSLFMSDLDRAGEALSEEAEGQARLRSPSDHATGSRP
GGEPAHRSPCSGVGRERGNQLTRHSMLHLHRRCMALYNYFTKLNEAGVSR
KTTTLLEEAAASVVPRVHLRTLRTWEKEFVSNGMMFRAPARGKWERAYVA
QQVAGTAVAGPGPGPRLGPGAGVAALVSAPVGVEEAPAPEEEREGAGTVA
SVDIDHSEEGGAAMVHMGGDITEALQETAGVSAVSAVSAVSAVSDSIGTG
RTLLVHTPPRPLIGCGVGGGTVLTSSTVNEACEGEG
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mRNA from alignment at D-mesarthrocarpus_Contig1079:11420..13303-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig1079.6.1 ID=mRNA_D-mesarthrocarpus_Contig1079.6.1|Name=mRNA_D-mesarthrocarpus_Contig1079.6.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1884bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1079:11420..13303- (Discosporangium mesarthrocarpum MT17_79)
GGGTGAACTGATGTTGGAAAATCAGCAGATATCAGGGGAAGACCAACCAC
CCACCCCGGAGGGATCGGAGCTCAACCGGGGTCAATGTAGTGCGTCGTTG
CCCGTTGTGACCCCGCACCTCTCCGAGCCTGGTCCCTTCTATTCCTTCCC
CTCAAATTTCGTGATGGGCCCTCTTACAGATCTGACTATGGAGCCTATCT
CTCTAGGGCCTACCTCTTCTTCCCTCTCACAGTCAGAGAGAAAGGAGAGA
TTGGGGGGGGGGGAAGGAGATGGCTGCATGGAAACCCCTGGTGGAACATC
TTCTGCTCATGTCCCTCCCAGTCCAGGGCGACCATCAAGAATGAGTTCCA
CCTGTAGAGTTGTTACGGCTAGAGCTGCATGTGAAGTGAGCAATATCACC
GCGACGCCAAAGTCGAAGCGGAGAACAGAGTACCAGACAGCATATAAAGC
GAAGAGGAGACTGGAAGAACGAACGAAGAAGTTTGAATGTAATAAGCAGA
AGAGGCAGGTGTACATCGACAGGTTATACAAGGTGTGTATAGAGGTGCTG
AAGGAGCAGCGCCGCGGGGGGAATGCCGTGGAAGCCGAAATTGTGACTTT
TTCATCGCCAGTTGATATATTGAGTGGCTTCGGTTACTCGGTGAATCTAA
AGTCAATCCCTCTGCAGAAAATATATCTCTCTCCTCACCTTCTCCCTTGT
TTTAGCCGACTTGCTCATCAAGGGCCGTGGTTGGAGGCTCGTTCTCTTCG
TCACTCTAACAGCCCCGCTTGTCACATACCCGACCCTTCCACCTCCAGAT
ACTCGAGAAGGATGCCTACGAGGATATAGTCATCTGGGACACCCCAGCCA
CATCGAGGGCACCGCCTTCAGGGTTGACTGCGTTGCCGACAGCCCCGTCC
GATCTTCGGTCTTGCCCCCCAGTCACCCCCACGCCCACGACGCACATGCC
CGAGACGCCGGTGGTCATGACGAGAACGGCAGCAACCACAGCTTCCTCAG
CCTGCGGCGGAATGACATTCCCCGCGGCAATGACCACCCCCTTGCCTGCC
CCAACCTCGGCGGGCCTTTCGCTTTTTATGTCGGACCTGGATCGAGCGGG
AGAGGCGCTGTCGGAAGAGGCGGAGGGGCAGGCGCGTTTGCGCTCGCCCT
CAGACCACGCCACTGGATCAAGGCCTGGGGGGGAGCCGGCCCATCGATCT
CCCTGCTCGGGCGTGGGCAGGGAGCGGGGCAATCAGCTGACGAGGCACTC
CATGCTACACCTCCACCGGCGCTGTATGGCCTTGTACAACTACTTCACCA
AGCTCAACGAGGCCGGGGTTTCCAGGAAGACCACCACACTTCTGGAGGAG
GCGGCCGCCAGCGTTGTGCCCCGCGTCCACCTCCGGACACTCCGAACCTG
GGAGAAGGAATTTGTATCCAACGGAATGATGTTCCGCGCACCCGCCAGGG
GGAAGTGGGAGAGAGCGTATGTTGCCCAGCAGGTCGCGGGAACGGCGGTG
GCAGGACCAGGACCAGGGCCACGGCTGGGTCCAGGGGCAGGGGTAGCAGC
GTTGGTTTCGGCACCGGTTGGGGTGGAAGAAGCACCGGCGCCAGAGGAGG
AGAGGGAGGGTGCGGGGACAGTAGCATCAGTGGATATTGACCACTCCGAG
GAGGGGGGTGCGGCCATGGTTCACATGGGGGGCGACATCACAGAGGCCCT
GCAAGAGACAGCAGGAGTTTCAGCGGTTTCAGCGGTTTCAGCGGTCTCAG
CAGTTTCAGACAGCATAGGTACAGGGCGCACCCTGCTAGTGCACACACCT
CCCCGCCCTCTGATTGGCTGTGGTGTTGGGGGGGGCACAGTGCTGACCTC
AAGCACTGTCAATGAGGCATGTGAGGGGGAAGGG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig1079:11420..13303-

>mRNA_D-mesarthrocarpus_Contig1079.6.1 ID=mRNA_D-mesarthrocarpus_Contig1079.6.1|Name=mRNA_D-mesarthrocarpus_Contig1079.6.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=1608bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1079:11420..13303- (Discosporangium mesarthrocarpum MT17_79)
ATGTTGGAAAATCAGCAGATATCAGGGGAAGACCAACCACCCACCCCGGA
GGGATCGGAGCTCAACCGGGGTCAATGTAGTGCGTCGTTGCCCGTTGTGA
CCCCGCACCTCTCCGAGCCTGGTCCCTTCTATTCCTTCCCCTCAAATTTC
GTGATGGGCCCTCTTACAGATCTGACTATGGAGCCTATCTCTCTAGGGCC
TACCTCTTCTTCCCTCTCACAGTCAGAGAGAAAGGAGAGATTGGGGGGGG
GGGAAGGAGATGGCTGCATGGAAACCCCTGGTGGAACATCTTCTGCTCAT
GTCCCTCCCAGTCCAGGGCGACCATCAAGAATGAGTTCCACCTGTAGAGT
TGTTACGGCTAGAGCTGCATGTGAAGTGAGCAATATCACCGCGACGCCAA
AGTCGAAGCGGAGAACAGAGTACCAGACAGCATATAAAGCGAAGAGGAGA
CTGGAAGAACGAACGAAGAAGTTTGAATGTAATAAGCAGAAGAGGCAGGT
GTACATCGACAGGTTATACAAGATACTCGAGAAGGATGCCTACGAGGATA
TAGTCATCTGGGACACCCCAGCCACATCGAGGGCACCGCCTTCAGGGTTG
ACTGCGTTGCCGACAGCCCCGTCCGATCTTCGGTCTTGCCCCCCAGTCAC
CCCCACGCCCACGACGCACATGCCCGAGACGCCGGTGGTCATGACGAGAA
CGGCAGCAACCACAGCTTCCTCAGCCTGCGGCGGAATGACATTCCCCGCG
GCAATGACCACCCCCTTGCCTGCCCCAACCTCGGCGGGCCTTTCGCTTTT
TATGTCGGACCTGGATCGAGCGGGAGAGGCGCTGTCGGAAGAGGCGGAGG
GGCAGGCGCGTTTGCGCTCGCCCTCAGACCACGCCACTGGATCAAGGCCT
GGGGGGGAGCCGGCCCATCGATCTCCCTGCTCGGGCGTGGGCAGGGAGCG
GGGCAATCAGCTGACGAGGCACTCCATGCTACACCTCCACCGGCGCTGTA
TGGCCTTGTACAACTACTTCACCAAGCTCAACGAGGCCGGGGTTTCCAGG
AAGACCACCACACTTCTGGAGGAGGCGGCCGCCAGCGTTGTGCCCCGCGT
CCACCTCCGGACACTCCGAACCTGGGAGAAGGAATTTGTATCCAACGGAA
TGATGTTCCGCGCACCCGCCAGGGGGAAGTGGGAGAGAGCGTATGTTGCC
CAGCAGGTCGCGGGAACGGCGGTGGCAGGACCAGGACCAGGGCCACGGCT
GGGTCCAGGGGCAGGGGTAGCAGCGTTGGTTTCGGCACCGGTTGGGGTGG
AAGAAGCACCGGCGCCAGAGGAGGAGAGGGAGGGTGCGGGGACAGTAGCA
TCAGTGGATATTGACCACTCCGAGGAGGGGGGTGCGGCCATGGTTCACAT
GGGGGGCGACATCACAGAGGCCCTGCAAGAGACAGCAGGAGTTTCAGCGG
TTTCAGCGGTTTCAGCGGTCTCAGCAGTTTCAGACAGCATAGGTACAGGG
CGCACCCTGCTAGTGCACACACCTCCCCGCCCTCTGATTGGCTGTGGTGT
TGGGGGGGGCACAGTGCTGACCTCAAGCACTGTCAATGAGGCATGTGAGG
GGGAAGGG
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