mRNA_D-mesarthrocarpus_Contig10789.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10789.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10789.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10789.1.1 vs. uniprot
Match: D7FZG5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZG5_ECTSI)

HSP 1 Score: 58.5 bits (140), Expect = 5.240e-9
Identity = 27/38 (71.05%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:    1 QARLPLLLAHGVIHLLGYDHEDEEDYEAMVAVEERVLK 114
            Q R  +LL HG+IHLLGYDHE E DY+AMVAVEE VL+
Sbjct:  249 QERASMLLVHGLIHLLGYDHETESDYKAMVAVEEEVLR 286
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BLAST of mRNA_D-mesarthrocarpus_Contig10789.1.1 vs. uniprot
Match: A0A835Z8A0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8A0_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 1.340e-8
Identity = 25/38 (65.79%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:    1 QARLPLLLAHGVIHLLGYDHEDEEDYEAMVAVEERVLK 114
            Q RLPLL  HG++HL+GYDHE +EDYE MVA EE +L+
Sbjct:  185 QERLPLLCIHGLLHLVGYDHETDEDYEVMVAREEELLR 222
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BLAST of mRNA_D-mesarthrocarpus_Contig10789.1.1 vs. uniprot
Match: A0A7S1GRK6_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GRK6_CYCTE)

HSP 1 Score: 54.7 bits (130), Expect = 2.920e-8
Identity = 23/38 (60.53%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:    1 QARLPLLLAHGVIHLLGYDHEDEEDYEAMVAVEERVLK 114
            + RL +LL HG++HL+GYDH D+EDYE MVA E+ +LK
Sbjct:   87 EKRLHMLLVHGMLHLVGYDHIDDEDYEVMVAKEDEILK 124
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BLAST of mRNA_D-mesarthrocarpus_Contig10789.1.1 vs. uniprot
Match: A0A1Z5JES7_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JES7_FISSO)

HSP 1 Score: 55.5 bits (132), Expect = 5.150e-8
Identity = 23/37 (62.16%), Postives = 31/37 (83.78%), Query Frame = 1 
Query:    1 QARLPLLLAHGVIHLLGYDHEDEEDYEAMVAVEERVL 111
            + R+ +LL HG++HL+GYDHED+EDYE MVA EE +L
Sbjct:  190 EERIHMLLIHGMLHLVGYDHEDDEDYELMVAKEEEIL 226
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BLAST of mRNA_D-mesarthrocarpus_Contig10789.1.1 vs. uniprot
Match: A0A1Z5K9I9_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K9I9_FISSO)

HSP 1 Score: 54.7 bits (130), Expect = 9.770e-8
Identity = 22/37 (59.46%), Postives = 31/37 (83.78%), Query Frame = 1 
Query:    1 QARLPLLLAHGVIHLLGYDHEDEEDYEAMVAVEERVL 111
            + R+ +LL HG++HL+GYDHED++DYE MVA EE +L
Sbjct:  188 EERIHMLLVHGMLHLVGYDHEDDDDYELMVAKEEEIL 224
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BLAST of mRNA_D-mesarthrocarpus_Contig10789.1.1 vs. uniprot
Match: A0A482V1W2_9ARCH (rRNA maturation RNase YbeY n=1 Tax=archaeon TaxID=1906665 RepID=A0A482V1W2_9ARCH)

HSP 1 Score: 51.6 bits (122), Expect = 3.950e-7
Identity = 21/38 (55.26%), Postives = 30/38 (78.95%), Query Frame = 1 
Query:    1 QARLPLLLAHGVIHLLGYDHEDEEDYEAMVAVEERVLK 114
            Q RLPLL+ HG++HL+GYDHE + D+EAM   EE +++
Sbjct:   84 QDRLPLLMVHGLLHLIGYDHETDGDWEAMTRREEEIIQ 121
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BLAST of mRNA_D-mesarthrocarpus_Contig10789.1.1 vs. uniprot
Match: A0A397SQL6_9GLOM (Uncharacterized protein (Fragment) n=1 Tax=Glomus cerebriforme TaxID=658196 RepID=A0A397SQL6_9GLOM)

HSP 1 Score: 50.4 bits (119), Expect = 3.960e-7
Identity = 20/38 (52.63%), Postives = 29/38 (76.32%), Query Frame = 1 
Query:    1 QARLPLLLAHGVIHLLGYDHEDEEDYEAMVAVEERVLK 114
            + RLP+L  HG+ HL+GYDHE++E+YE M   E+ +LK
Sbjct:   15 EKRLPVLYTHGICHLIGYDHENDEEYEKMNKKEQEILK 52
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BLAST of mRNA_D-mesarthrocarpus_Contig10789.1.1 vs. uniprot
Match: M4BDU5_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BDU5_HYAAE)

HSP 1 Score: 50.8 bits (120), Expect = 4.840e-7
Identity = 20/38 (52.63%), Postives = 29/38 (76.32%), Query Frame = 1 
Query:    1 QARLPLLLAHGVIHLLGYDHEDEEDYEAMVAVEERVLK 114
            + RLP+L+AHG+ HL+GYDHE ++DYE M   E  +L+
Sbjct:   46 EERLPVLMAHGLCHLMGYDHEQDDDYEHMQKAETHILR 83
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BLAST of mRNA_D-mesarthrocarpus_Contig10789.1.1 vs. uniprot
Match: W7UC15_9STRA (Rrna maturation factor n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7UC15_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 9.090e-7
Identity = 23/37 (62.16%), Postives = 29/37 (78.38%), Query Frame = 1 
Query:    1 QARLPLLLAHGVIHLLGYDHEDEEDYEAMVAVEERVL 111
            Q RLP L+ HGV+HLLG+DHE ++DY  MV  E+RVL
Sbjct:  347 QDRLPFLVIHGVLHLLGFDHETDKDYNEMVKEEDRVL 383
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BLAST of mRNA_D-mesarthrocarpus_Contig10789.1.1 vs. uniprot
Match: B7FP01_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FP01_PHATC)

HSP 1 Score: 51.2 bits (121), Expect = 1.330e-6
Identity = 20/38 (52.63%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:    1 QARLPLLLAHGVIHLLGYDHEDEEDYEAMVAVEERVLK 114
            + R+ +LL HG++HL+GYDH D++DY+ MVA EE +L+
Sbjct:  148 EERINMLLVHGMLHLVGYDHIDDDDYQLMVAKEEEILR 185
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10789.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZG5_ECTSI5.240e-971.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z8A0_9STRA1.340e-865.79Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1GRK6_CYCTE2.920e-860.53Hypothetical protein (Fragment) n=1 Tax=Cyclophora... [more]
A0A1Z5JES7_FISSO5.150e-862.16Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A1Z5K9I9_FISSO9.770e-859.46Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A482V1W2_9ARCH3.950e-755.26rRNA maturation RNase YbeY n=1 Tax=archaeon TaxID=... [more]
A0A397SQL6_9GLOM3.960e-752.63Uncharacterized protein (Fragment) n=1 Tax=Glomus ... [more]
M4BDU5_HYAAE4.840e-752.63Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
W7UC15_9STRA9.090e-762.16Rrna maturation factor n=1 Tax=Nannochloropsis gad... [more]
B7FP01_PHATC1.330e-652.63Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10789contigD-mesarthrocarpus_Contig10789:3753..3866 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FZG5
Preferred nameYBEY
PFAMsUPF0054
Model size114
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464
Exons1
Evalue8.6e-10
EggNOG OGsCOG0319@1|root,2R6QZ@2759|Eukaryota
Ec32 ortholog descriptionEndoribonuclease YbeY
Ec32 orthologEc-19_003220.1
Descriptionmetalloendopeptidase activity
Cds size114
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789212.1266868-CDS-D-mesarthrocarpus_Contig10789:3752..38661680789212.1266868-CDS-D-mesarthrocarpus_Contig10789:3752..3866Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10789 3753..3866 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10789.1.1prot_D-mesarthrocarpus_Contig10789.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10789 3753..3866 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10789.1.1

>prot_D-mesarthrocarpus_Contig10789.1.1 ID=prot_D-mesarthrocarpus_Contig10789.1.1|Name=mRNA_D-mesarthrocarpus_Contig10789.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=38bp
QARLPLLLAHGVIHLLGYDHEDEEDYEAMVAVEERVLK
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mRNA from alignment at D-mesarthrocarpus_Contig10789:3753..3866-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10789.1.1 ID=mRNA_D-mesarthrocarpus_Contig10789.1.1|Name=mRNA_D-mesarthrocarpus_Contig10789.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=114bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10789:3753..3866- (Discosporangium mesarthrocarpum MT17_79)
CAGGCCCGCCTCCCGCTGCTCCTGGCACACGGAGTCATTCACCTCCTGGG
GTACGACCATGAGGACGAGGAAGACTACGAGGCCATGGTGGCGGTCGAGG
AGAGGGTCCTCAAG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10789:3753..3866-

>mRNA_D-mesarthrocarpus_Contig10789.1.1 ID=mRNA_D-mesarthrocarpus_Contig10789.1.1|Name=mRNA_D-mesarthrocarpus_Contig10789.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=114bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10789:3753..3866- (Discosporangium mesarthrocarpum MT17_79)
CAGGCCCGCCTCCCGCTGCTCCTGGCACACGGAGTCATTCACCTCCTGGG
GTACGACCATGAGGACGAGGAAGACTACGAGGCCATGGTGGCGGTCGAGG
AGAGGGTCCTCAAG
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