mRNA_D-mesarthrocarpus_Contig10788.1.2 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10788.1.2
Unique NamemRNA_D-mesarthrocarpus_Contig10788.1.2
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10788.1.2 vs. uniprot
Match: A0A6H5JC72_9PHAE (GLOBIN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC72_9PHAE)

HSP 1 Score: 179 bits (455), Expect = 1.410e-46
Identity = 111/250 (44.40%), Postives = 151/250 (60.40%), Query Frame = 1 
Query:  130 YQLRVAVLDTMGKLLVVLRALFRPPHSRSVQKGVAPLLDAHQDVLRDKAATVLGKLSLCGKDVPDGSGLGLVPEWINVAISVSLEAHSLLQEAWPDEGVAPGKVPPSKLDIILREHRLLPPLHTLHQDQQGQQGLLGPEEYVLALGRRFPALCKLLSTLLRDTLPRPSEMQSQEVGLDGAVAPQDDNNQNPPSTASXXXXXXXXXXXXXXXXXXXXXXXXQFPFLVSVTLSLVERVLRMGQQATKMLEDK 879
            Y L+VAVL+TM + L +LRALF+PP S  VQK VAPLLDA ++VLR+KAA VLGKLSLCG+D            W N+AI VSLE+H+LLQ+AWPDE V  G++P ++++ I+ EH LLPP+    QD   +  +   E +VL++GRRFPALCKLL+TL+  + P+  E +                 +   S+ S                        Q PFLVS+++SLV+RVLRMG+QA   LE++
Sbjct:  992 YLLKVAVLETMNRFLTILRALFKPPQSTRVQKVVAPLLDASEEVLREKAAAVLGKLSLCGRDTLT---------WANIAIKVSLESHNLLQDAWPDEIV--GQIPSAQVETIMGEHPLLPPI----QDTFNKGDV---EAHVLSIGRRFPALCKLLATLVTASPPKSQEPEEGXXXXXXXXXXXXXXKEIDGSSDSAPF---------------------QTPFLVSLSISLVQRVLRMGEQAWAKLEEE 1202
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BLAST of mRNA_D-mesarthrocarpus_Contig10788.1.2 vs. uniprot
Match: D7FHK6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHK6_ECTSI)

HSP 1 Score: 167 bits (424), Expect = 5.120e-43
Identity = 93/169 (55.03%), Postives = 121/169 (71.60%), Query Frame = 1 
Query:  130 YQLRVAVLDTMGKLLVVLRALFRPPHSRSVQKGVAPLLDAHQDVLRDKAATVLGKLSLCGKDVPDGSGLGLVPEWINVAISVSLEAHSLLQEAWPDEGVAPGKVPPSKLDIILREHRLLPPLHTLHQDQQGQQGLLGPEEYVLALGRRFPALCKLLSTLLRDTLPRPSE 636
            Y L+VAVL+TM + L VLRALFRPP S  VQK VAPLLDA ++VL++KAA VLGKLSLCG+D           +W N+AI VSLE+H+LLQ+AWPDE V  G+VP ++++ I+ EH LLPP+    QD   +  +   E YVL++GRRFPALCKLL+TL+  + P+  E
Sbjct:  159 YLLKVAVLETMNRFLTVLRALFRPPQSTRVQKVVAPLLDASEEVLKEKAAAVLGKLSLCGRDTL---------KWANIAIKVSLESHNLLQDAWPDEIV--GQVPSAQVETIMGEHPLLPPI----QDTFNKGDV---EAYVLSIGRRFPALCKLLATLVTASPPKSQE 309
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10788.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JC72_9PHAE1.410e-4644.40GLOBIN domain-containing protein n=1 Tax=Ectocarpu... [more]
D7FHK6_ECTSI5.120e-4355.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10788contigD-mesarthrocarpus_Contig10788:70..4074 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1034
Hectar predicted targeting categoryother localisation
Exons5
Cds size1032
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789212.0434043-CDS-D-mesarthrocarpus_Contig10788:71..4611680789212.0434043-CDS-D-mesarthrocarpus_Contig10788:71..461Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10788 72..461 -
1680789212.054148-CDS-D-mesarthrocarpus_Contig10788:1029..12331680789212.054148-CDS-D-mesarthrocarpus_Contig10788:1029..1233Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10788 1030..1233 -
1680789212.0694573-CDS-D-mesarthrocarpus_Contig10788:1911..20551680789212.0694573-CDS-D-mesarthrocarpus_Contig10788:1911..2055Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10788 1912..2055 -
1680789212.078938-CDS-D-mesarthrocarpus_Contig10788:3050..31771680789212.078938-CDS-D-mesarthrocarpus_Contig10788:3050..3177Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10788 3051..3177 -
1680789212.088358-CDS-D-mesarthrocarpus_Contig10788:3907..40741680789212.088358-CDS-D-mesarthrocarpus_Contig10788:3907..4074Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10788 3908..4074 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10788.1.2prot_D-mesarthrocarpus_Contig10788.1.2Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10788 72..4074 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10788.1.2

>prot_D-mesarthrocarpus_Contig10788.1.2 ID=prot_D-mesarthrocarpus_Contig10788.1.2|Name=mRNA_D-mesarthrocarpus_Contig10788.1.2|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=344bp
GEGGEGEGEGGEGEGGEGEGEGEGDKDHESHRVAVNRLHMHHHYQLRVAV
LDTMGKLLVVLRALFRPPHSRSVQKGVAPLLDAHQDVLRDKAATVLGKLS
LCGKDVPDGSGLGLVPEWINVAISVSLEAHSLLQEAWPDEGVAPGKVPPS
KLDIILREHRLLPPLHTLHQDQQGQQGLLGPEEYVLALGRRFPALCKLLS
TLLRDTLPRPSEMQSQEVGLDGAVAPQDDNNQNPPSTASTSSASTSTSTS
PTPSSSSSSSPSSQFPFLVSVTLSLVERVLRMGQQATKMLEDKILDMDVG
SGVDGADDVTGVSGVEGTVGVDRGEGVEGAFGEDGIGLGLQESH
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mRNA from alignment at D-mesarthrocarpus_Contig10788:70..4074-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10788.1.2 ID=mRNA_D-mesarthrocarpus_Contig10788.1.2|Name=mRNA_D-mesarthrocarpus_Contig10788.1.2|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=4005bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10788:70..4074- (Discosporangium mesarthrocarpum MT17_79)
GGTGAGGGGGGTGAGGGTGAGGGTGAGGGGGGAGAGGGTGAGGGGGGTGA
GGGTGAGGGTGAGGGTGAGGGGGACAAAGATCATGAAAGCCACAGGGTGG
CTGTCAACAGGCTCCACATGCACCACCACTACCAGCTGAGGGTTGCTGTG
CTGGACACCATGGGAAAGTGAGTGAGAGAAGAAGAGAGGGGGTTTAGGGT
TACTTTACTGTTCTGTGTGTTGCGCCAAGTGATGAGAGGTGATGAGGTGA
GGAGATGATGTGGTGTGGTAGCCCTAGCCCCAATCCTAACCCTTATTGTA
TGTGGACAGGGGAGGGATTGAGGTTGGGGCTCAATGGCAAATCATAAATG
ATGACTACACCCGTTGAGTCAATGCCATTAAGGTTAGGGTTGGGGTTCTC
TAATGTAAGACATTGCGATACTTATTAAGTTGTTGAGTAATTGACAAGGG
AACAGAATGGGAACAGAATGGGCAAAGGCTCCAGCCAGAATTTACTGCTT
TACTCATTTAAGTACTTAAAGGATTAGGGTTACTGTAAGGGTGGTTTCCT
GTTCTCACTTTATCTCATTACTATATACTGAAGCGTGACGGTGTTTTTTT
CTTCCTTGGATAAGGTATGTTAAAATGTGTATGCTTCACCGTTAACCTTA
GTCCTAAATCTTTGTCCCAATGTTTAAATGTATTTTTTCTTGTTCTTTCC
ACAAGCTATCGTGTATGTATCACATGCTCTATTCCTAACCTTATTCCTAT
CCTATTCCTAACCCTAACCCTAACCCTAAGCCTAATTCTAACTCTCGACA
CCTCAACACAACAGTGCAAGAGTGTGTCCACATCATGTCTTTTAGAGTAT
TGAACTGCTTTACTGAGCCACGGTTGTTGTGTGCTGTTATTCTGCAGGCT
GCTTGTGGTTCTCCGAGCACTGTTCCGCCCCCCTCACTCCAGGAGTGTCC
AGAAGGGAGTAGCGCCCCTATTGGACGCACATCAGGATGTCCTTAGGGAT
AAGGCTGCTACCGTGCTTGGAAAGGTGGGAGCGATTGCCCTAACCCTAAC
CCTAACCCTAACCCTTTACTGAATGGTACGATACATGCCCTAACCCTAAC
CCAGATGTTGCTTTACTGAATGGTACGATACATGCCCTAACCCTAACCCA
GATGTTGCTTTACTGAATGCTACGATACATGCCCTAACCCTAACCCAGAT
GTTGCTTTACTGAATGCTACGATACATGCCCTAACCCTAACCCAGATGTT
GCTTTACTGAATGGTACGATACATGCCCTAACTGTAGAATCCCTAACCCT
AACCCTAACCCTACTATCTGCTCTAATCTAATCCTAACCCTAACTCCAAC
ACTGCTATCCGCTCCAGTCTAAACCCTTACCCTGACCCTACCATCCACCC
ACCCTAAACCCTAACCCTAACCTTAATCCTAACCCTAGCCCTAAATCCTG
ATCCTAACCCTAACCCTAACCCTAAACCTAAACCTAAACCTAACCCTAAC
CCTAATCCTAGCCCTGACGTGCAACTTGTGCGCTGACTCTTTGAGACTCT
TTCAGTGGACACTAACCCTTGAGAGGCTGGTAGGCAACAGAGCAACCCCA
ACTCTTACCTTGACCTTAAGCTTTTATTTGACACCAGAACCTTGGCTGTA
ACCCCTGTAACCTTGTCCACAACGCAAAGACAGAAACTATGATGCAGTCT
CTCTCAGTGCATATCCACGGCTGCATAGTAGTACTTTCAAGTATGAACTT
GCATACACTGCCAAGCATGTAATACTTAGTGTGGAGTGTGAAGTATGTAT
TATGTGGTATGCCACAGCACACAAACGGGAATGATGCGATCATTCGCTTG
TCGGGCAGTCCAGTTTGTCCATCTGCGCTGGGGACGTTTTTTTTTTCCCT
TTTTGCTTTTTCTTAAAGTTTTTGCTTTTTTTTTTTTTTGTCTGATCGTT
TTGTATTCGCACCCTCCTGTTTTGTTTGTTTGCACTTTTTTCTCCGGTTT
GTTTCTCTTTCTCTCTCAGCTTTCTCTCTGTGGAAAGGATGTACCCGATG
GGTCAGGGTTAGGGTTGGTGCCGGAGTGGATCAACGTTGCCATCTCAGTA
TCCCTGGAGGCACACAGCCTCCTGCAAGAGGCCTGGCCAGATGAGGGAGT
GGCACCAGGAAAGGTACAGCAGGGTTAGGGTTAGGGTTAGGGTTAGGGTT
GGGGGTTAGAGTTGATTTAGAGCCGCCTATTCTGTAGGTACTGTAACATC
GTTGATTTAGAAGTAGTGATGTTTTGCCTGATACCTGTTTTATGTGTTCC
ATCTTATTTCTGTCTTTCATGTGTTTTTTTGGCTTGAGGATATCTTATGT
GAGGTAAGGTGTTCTTGCCCCACTCATATTTTAGATTGTTTTTGTGTCCC
TCTGTCAAAGTGATTATTAAAAAGAATTAATAGGGCTAGGGTTAGGGTTA
GTATAGGGGTTTGTGATGGTTGGAGGCTGAGTGCTTTTCAGCTGGTCACC
AAGCCAAGCTATTGTTGAGGACACCCATCACCCGTCAACCGAACCCCTTG
TGTTTATGTGGCACATGTTCTCTATCATCAACATATGAATCGAAGTCAAC
CTCTAGGGTTGGGGGTTTTCAATGCACACCTTCCGTTCTTCCTGTGACTC
ACAAAGCTCTACTGAGATATTGCCCCCCATCCACCCATCTCCACCCCTAC
TCCTACCCTACCCCTAACCCTAACCCTGTCTCTTCTTGGCACTTGGTACT
TGATCATTTATAGTTGATGTTTGCCTGCTGACTTTGTCCCTTTACTTTGT
TCCCTGACTCTGTTCCTTTACTTTACCCTTAACTTTAAAAGGTGCCTCCG
TCAAAGCTGGACATCATTCTCCGGGAACACCGCCTGCTACCGCCACTTCA
CACGCTTCACCAGGACCAACAGGGCCAACAAGGGTTACTAGGCCCAGAGG
AGTATGTGCTGGCCCTGGGGCGGAGGTTCCCAGCGCTTTGCAAGCTGCTG
TCAACCCTTCTCAGGGACACCCTTCCACGACCATCAGAGATGCAGGTGGG
AATGCTTCAACAACTACAGTTACTCCTTTACTGTTTTCTTTATAGTTCAT
ACTTTAAAGTACATTTTGCTCGAATTATGTTGAGGGAATAACCACACCCT
TAATTCAGCTGCTACTAATGCAGTTGGAAAAGTATACATACCACTGATAT
AGTTTTAAGTATGTTGCTACTAGTATAGTTTGAAGTATGCGGCTACTGGT
GTAAGTTGAAGTATGCTGCTGCTGATGTGTACGTTGAAGTACATAGTATG
CAGTACTACATATTTGTAAGGCTAAGGGCTCTACAATAATCCCTACCCCT
AACCCAAACCCTAAGTTTTTTGGTGGGTTGTAGTAGGTTAATGGTAGTCA
ACTTAGGAGTATAGGAGTGCATAGTTGTAATAGCTGTGTTCTGTAGTAGG
ATTTTTAGCTTGAAACAAAAGTACTTGAAATAAGAGAACAAAGTGTTATG
GTGTGATTCAGTGTACTTGGTACATTCACAGTGCATAGCACTACTACAGT
CCTAACCCTAAACCTCCCCTGCCCCTCCCTCTAACCCTAACCCTAACCCT
AACCCATTTGCAGAGCCAAGAGGTGGGGCTGGACGGTGCCGTGGCACCAC
AGGATGACAACAACCAGAACCCACCGTCCACTGCCTCAACATCATCAGCT
TCAACATCAACATCAACATCCCCAACACCGTCCTCTTCATCCTCCTCCTC
ACCATCAAGTCAGTTTCCCTTCCTCGTCTCAGTGACCCTCTCCCTGGTTG
AAAGGGTGCTGCGCATGGGGCAGCAGGCCACCAAGATGCTAGAGGACAAG
ATACTGGACATGGACGTGGGCAGTGGTGTTGATGGTGCTGATGATGTCAC
TGGGGTCAGTGGTGTTGAAGGCACCGTGGGGGTTGACAGGGGTGAGGGGG
TTGAGGGTGCCTTTGGAGAGGACGGGATAGGGTTAGGGTTACAGGAGAGC
CACCG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10788:70..4074-

>mRNA_D-mesarthrocarpus_Contig10788.1.2 ID=mRNA_D-mesarthrocarpus_Contig10788.1.2|Name=mRNA_D-mesarthrocarpus_Contig10788.1.2|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=1032bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10788:70..4074- (Discosporangium mesarthrocarpum MT17_79)
GGTGAGGGGGGTGAGGGTGAGGGTGAGGGGGGAGAGGGTGAGGGGGGTGA
GGGTGAGGGTGAGGGTGAGGGGGACAAAGATCATGAAAGCCACAGGGTGG
CTGTCAACAGGCTCCACATGCACCACCACTACCAGCTGAGGGTTGCTGTG
CTGGACACCATGGGAAAGCTGCTTGTGGTTCTCCGAGCACTGTTCCGCCC
CCCTCACTCCAGGAGTGTCCAGAAGGGAGTAGCGCCCCTATTGGACGCAC
ATCAGGATGTCCTTAGGGATAAGGCTGCTACCGTGCTTGGAAAGCTTTCT
CTCTGTGGAAAGGATGTACCCGATGGGTCAGGGTTAGGGTTGGTGCCGGA
GTGGATCAACGTTGCCATCTCAGTATCCCTGGAGGCACACAGCCTCCTGC
AAGAGGCCTGGCCAGATGAGGGAGTGGCACCAGGAAAGGTGCCTCCGTCA
AAGCTGGACATCATTCTCCGGGAACACCGCCTGCTACCGCCACTTCACAC
GCTTCACCAGGACCAACAGGGCCAACAAGGGTTACTAGGCCCAGAGGAGT
ATGTGCTGGCCCTGGGGCGGAGGTTCCCAGCGCTTTGCAAGCTGCTGTCA
ACCCTTCTCAGGGACACCCTTCCACGACCATCAGAGATGCAGAGCCAAGA
GGTGGGGCTGGACGGTGCCGTGGCACCACAGGATGACAACAACCAGAACC
CACCGTCCACTGCCTCAACATCATCAGCTTCAACATCAACATCAACATCC
CCAACACCGTCCTCTTCATCCTCCTCCTCACCATCAAGTCAGTTTCCCTT
CCTCGTCTCAGTGACCCTCTCCCTGGTTGAAAGGGTGCTGCGCATGGGGC
AGCAGGCCACCAAGATGCTAGAGGACAAGATACTGGACATGGACGTGGGC
AGTGGTGTTGATGGTGCTGATGATGTCACTGGGGTCAGTGGTGTTGAAGG
CACCGTGGGGGTTGACAGGGGTGAGGGGGTTGAGGGTGCCTTTGGAGAGG
ACGGGATAGGGTTAGGGTTACAGGAGAGCCAC
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