mRNA_D-mesarthrocarpus_Contig10780.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10780.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10780.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10780.1.1 vs. uniprot
Match: A0A6H5KNG5_9PHAE (BEACH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNG5_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 2.940e-28
Identity = 87/225 (38.67%), Postives = 110/225 (48.89%), Query Frame = 1 
Query:   13 DQQILAASSSSVLHYDLRQEHLIRGGREGCVIPPAAVWPLSGPLRDLRACSLA-------HNHGGVREQLEGT-----GLSCICDGKNGEWISVGSSGGQVVVLDKRLGGGRPLYRWNAHSSVVERVFPISRNLLLTVSRDLTAVVWDLSISMTDPLSGVPVPAGRRLSR-------VVENGGMGLRDRSFSSAPMPVEVPPARVSTTVGLPHYGHGLSPATVLV 630
            DQQI A+    V+H+D RQ    R G     + P A W +   L+ L A   +       H HG    +         GL  +C+G+ G W++ GS  G VVV DKR  GGRPL+ WNAH  VV  VF ++R+L+LT+SRD TAV+WDLS S  +         G  L R          +GG G             E  P RVST  GLP    GLSPATVL+
Sbjct: 2524 DQQITASYGGGVVHFDCRQG---RSGGTAQDVFPVAQWDVDARLQSLLALPSSKGQSRGDHRHGSSSRRNGDAAPLPVGLCTVCEGE-GSWVAAGSGAGNVVVFDKRRPGGRPLFWWNAHGGVVVGVFHVARHLVLTMSRDRTAVLWDLSRSPGEGSGIDSTGTGPALLRHPSWGVGAYSSGGQGSGLTGGGEGGYG-EASPVRVSTAFGLPDAAPGLSPATVLM 2743
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BLAST of mRNA_D-mesarthrocarpus_Contig10780.1.1 vs. uniprot
Match: D8LHG8_ECTSI (BEACH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHG8_ECTSI)

HSP 1 Score: 126 bits (316), Expect = 3.970e-28
Identity = 86/228 (37.72%), Postives = 110/228 (48.25%), Query Frame = 1 
Query:   13 DQQILAASSSSVLHYDLRQEHLIRGGREGCVIP---PAAVWPLSGPLRDLRACSLA-------HNHGGVREQLEGT-----GLSCICDGKNGEWISVGSSGGQVVVLDKRLGGGRPLYRWNAHSSVVERVFPISRNLLLTVSRDLTAVVWDLSISMTDPLSGVPVPAGRRLSR-------VVENGGMGLRDRSFSSAPMPVEVPPARVSTTVGLPHYGHGLSPATVLV 630
            DQQ+ A+    V+H+D RQ      GR G  +    P A W +   L+ L A   +       H HG    +         GL  +C+G+ G W++ GS  G VVV DKR  GGRPL+ WNAH  VV  VF ++R+LLLT+SRD TAV+WDLS S  +         G  L R          +GG      +        E  P RVST  GLP    GLSPA VL+
Sbjct: 2420 DQQLTASYGGGVVHFDCRQ------GRSGGTVQDLFPVAQWDVDARLQSLLALPSSKGQSRGDHRHGSSSRRNGDAAPLPVGLCTVCEGE-GSWVAAGSGAGNVVVFDKRRPGGRPLFWWNAHGGVVVGVFHVARHLLLTMSRDRTAVLWDLSRSPAEGSGFDSTGTGPALLRHPSWGVGAYSSGGQEGSGLAGGGEGGHGEASPVRVSTAFGLPDAAPGLSPAAVLM 2640
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10780.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KNG5_9PHAE2.940e-2838.67BEACH domain-containing protein n=1 Tax=Ectocarpus... [more]
D8LHG8_ECTSI3.970e-2837.72BEACH domain-containing protein n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10780contigD-mesarthrocarpus_Contig10780:1046..4106 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LHG8
PFAMsBeach,Pkinase,WD40
Model size1045
Max annot lvl2759|Eukaryota
KEGG koko:K17601
Hectar predicted targeting categoryother localisation
Exons4
Evalue6.5e-29
EggNOG OGsKOG1786@1|root,KOG1786@2759|Eukaryota
Descriptionaggrephagy
Cds size1044
COG categoryT
BRITEko00000,ko01009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789211.5533347-CDS-D-mesarthrocarpus_Contig10780:1045..11101680789211.5533347-CDS-D-mesarthrocarpus_Contig10780:1045..1110Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10780 1046..1110 +
1680789211.564055-CDS-D-mesarthrocarpus_Contig10780:1710..18271680789211.564055-CDS-D-mesarthrocarpus_Contig10780:1710..1827Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10780 1711..1827 +
1680789211.5734017-CDS-D-mesarthrocarpus_Contig10780:2738..29271680789211.5734017-CDS-D-mesarthrocarpus_Contig10780:2738..2927Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10780 2739..2927 +
1680789211.5831134-CDS-D-mesarthrocarpus_Contig10780:3432..41051680789211.5831134-CDS-D-mesarthrocarpus_Contig10780:3432..4105Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10780 3433..4105 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10780.1.1prot_D-mesarthrocarpus_Contig10780.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10780 1046..4105 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10780.1.1

>prot_D-mesarthrocarpus_Contig10780.1.1 ID=prot_D-mesarthrocarpus_Contig10780.1.1|Name=mRNA_D-mesarthrocarpus_Contig10780.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=348bp
GVGGDQQILAASSSSVLHYDLRQEHLIRGGREGCVIPPAAVWPLSGPLRD
LRACSLAHNHGGVREQLEGTGLSCICDGKNGEWISVGSSGGQVVVLDKRL
GGGRPLYRWNAHSSVVERVFPISRNLLLTVSRDLTAVVWDLSISMTDPLS
GVPVPAGRRLSRVVENGGMGLRDRSFSSAPMPVEVPPARVSTTVGLPHYG
HGLSPATVLVTEGSRGCSEDSSNIAIGRGGGWGHREDGQLAATFTSSSPP
SSPSPSSASTLPLPSMCSSNPSWPVLLAISGNRVTASPLTFAGVSTAAPG
QQVARRPEGGASRVGVGQTREEIVTKLGKPGRFSDHYSGHDKKYASLG
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mRNA from alignment at D-mesarthrocarpus_Contig10780:1046..4106+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10780.1.1 ID=mRNA_D-mesarthrocarpus_Contig10780.1.1|Name=mRNA_D-mesarthrocarpus_Contig10780.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=3061bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10780:1046..4106+ (Discosporangium mesarthrocarpum MT17_79)
GGGGTGGGGGGTGACCAGCAGATTCTCGCCGCTTCCTCCTCGTCTGTTCT
CCACTATGACCTGAGGTAGGCGGTGCTTCCCGAGGAGTCATGATGCCCTT
TTGGGTGTCGCGGAGACATCCAGTGCGCCCCTATGTAGCTGCGGTCTCGC
TGGGATTGATGGACTCCTGGTGTGTATCATTGTCATTTTTTCTCAGGGCT
TTGGCATGGGGATGGTTGGGAAGGGAAGGGAAGGGAGCGAAACAAGATCA
GCGTCTTAGTATGAGCCACATTCACTGCCCATAGCTTATTCTGACATTGG
GCCTGTGAATTTGTAGGATTCTTTCGTTTGACTGCATTCAATGTGGTGCT
GATTACTCAATCATTGTACAGCACCTCTACTGTGCTTATGAGTCTATTCT
CACGAACAAACGGTCTAGATCTTGCCCCAGCCCTCTGATTCCCTCTGACC
TCGACCCTCTTGTCTATCTATGGTGAGGCAAAGCGGCACAGTCCTCTCAG
CAGATTCCTCACAGACTTCATACCTCTGATACAATCCTAGCACCCCTTTC
ATTGGGATACAGGTTCCCATCGCTGAGTTTCCCCCCCCACCTCCCCCAGA
GCCACATCTGCATTCCCTCGCCATTCATAAGAGACCCGTGCATTGTTTTG
TCCAATCTCTCTCAGGCAAGAGCACTTGATCAGGGGGGGAAGGGAAGGAT
GCGTGATTCCTCCTGCTGCAGTGTGGCCCTTGTCAGGACCTCTCAGGGAC
TTGCGGGCCTGCTCGCTGGCCCACAATCACGGGTGAGCGAGCGAGCGCAT
CCTTGATCATGTGGCAACTTGTCATTCTCTTAATTTGCACGTACAGTGTG
TGTATCGCTTCAATTCTCCCCTCCACTAGTTGATAAGGTGCTTCAGACCT
GTCATTTCAGTTTCGTATGACAGACTGACTTTCGTTAGTACGAGGTATGT
AGTACTTACTCCCTGTACCCATCCTGCAGCTATTACCGTTGCTGCTGGCA
CCAGTCTTGCCCTCCATTGGACCCCTGATGATGACTTTTTGATTGTTCTC
ATTCCAGTCGCCATACCCAGAAGATCCCGCCTGGTATTGTTGTTTATCGT
CGTGTCATTTCTTTTTGAAGGCTGTGTCTTCCAGCAAAAACGTTTCCTCA
ACAACGGGCTTAAACAGCGCGCGCACTAGGCGCGACGATACCCGGAGCTT
TACATGCCCATCATGGGTAGAGGAGCTCTAGGGATATCCAGCGATTCCGT
TCCATCTACCAACTCTTCGTATATCACGAGATACGAACGTGTGTATTTTG
GTTGCAGAATGAATTTTGGCTGAAAATAAATGTTTTTCCTGTATGTACGC
TTTAGTACAAAGTAGTATATGAGAATATCCTTAAGGTTGTCATGGGCATT
CCGCTGGAAGAAACTCATTCCTGTCTACATGTTGCGAAGACGACGTTTGT
GAGATTCGATTTCTTCCTCTTGACGTCGATTGCGTGTTGCAATTTGTACT
CCGTATGAAGTTATTTGTTTTCCAACCAAACCTCCCAACCCCCAACAAGT
GTGCTCCCTTCCCTCTTCCCTCCTCCCCCTATCACATATTCCAAATCCTT
AAGCGGTTCGAAATGATTCAATTATACGCCCTCCGTGCCAATCGCTTCGC
ATGTGAACCTCAAACCTCACCCGACACCTCGCTCCTTACCAAGGGGAGTC
CGAGAACAGTTAGAAGGCACAGGCCTCTCCTGCATCTGTGATGGCAAGAA
TGGGGAGTGGATCTCAGTGGGATCTTCCGGTGGCCAGGTAGTGGTGTTGG
ATAAGAGACTTGGCGGGGGGAGACCTCTGTATCGGTGGAATGCCCACTCA
AGCGTGGTCGAGAGGGTATTCCCGATTTCCAGGTGGGTGCATTGATGTTG
TCGTTACCACAAGGAGAAAATGACGGACGGAGTGAGCAGACAGAGGGACC
AGTCCTGTATTTTTGGTTCGACTTACGTCTACTACTACTGTAGGTCGTAG
GACATTTTGATGAATATCTAACTGTCCCTCACCCCTTCCCTTGCTTGTAA
CTTCAATACATGATTAGGAGTGTATTTGTGGATTAAGGCAAACATCGTGT
TGGAAGTTTTGCGCTTGGCAATGCTTCTTGAGAGGAACAAAAAAGATGCT
ATGCCTGACATTCCTCCCTTGTCATGTAACTTTGGTGTACTTTGTAGCTG
TTCCTTTTTTGTTCGTAGAAGGTCGCCGCGTGTAGAGCTGTCAAGCGCGG
GGAACATGTGCCTCACAATGCTCCACTCGCCTTGTTGGAAGCCCTCGTTT
TCCAGTTTGCCCTCTCACTCCCTCGTAGAACCAGCCCAGATGGAACCACC
AACCCACCCCACATAGCCCCTGGCTTGGCTCCCCCAGGAACCTTCTCCTA
ACCGTATCCCGAGATTTGACGGCTGTGGTCTGGGACCTCAGCATCTCCAT
GACCGATCCCCTTTCGGGCGTGCCAGTTCCTGCTGGCAGAAGGCTGTCCA
GGGTGGTCGAGAACGGAGGGATGGGGCTGAGGGACCGCAGCTTCTCCTCA
GCTCCCATGCCTGTGGAAGTCCCCCCCGCGAGGGTCTCCACGACTGTTGG
GTTACCTCACTACGGCCATGGGTTGTCGCCTGCCACAGTCCTGGTGACTG
AGGGCTCCAGGGGCTGCAGTGAGGATAGTTCAAACATAGCAATAGGAAGG
GGTGGGGGGTGGGGGCATAGAGAAGATGGCCAACTAGCAGCCACCTTCAC
CTCCTCCTCCCCTCCCTCTTCTCCCTCCCCCTCCTCGGCCTCCACGTTGC
CGTTGCCATCCATGTGCTCCTCCAATCCCTCGTGGCCTGTACTCCTTGCG
ATCTCGGGGAATCGTGTCACAGCATCGCCGCTGACGTTCGCTGGAGTGTC
GACGGCGGCACCCGGGCAACAAGTGGCAAGAAGACCGGAAGGGGGAGCGT
CGAGGGTTGGTGTGGGGCAGACCAGGGAGGAGATAGTGACGAAGCTCGGC
AAGCCTGGGAGGTTCTCGGACCATTATTCTGGACACGACAAAAAGTATGC
CAGTCTCGGGG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10780:1046..4106+

>mRNA_D-mesarthrocarpus_Contig10780.1.1 ID=mRNA_D-mesarthrocarpus_Contig10780.1.1|Name=mRNA_D-mesarthrocarpus_Contig10780.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=1044bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10780:1046..4106+ (Discosporangium mesarthrocarpum MT17_79)
GGGGTGGGGGGTGACCAGCAGATTCTCGCCGCTTCCTCCTCGTCTGTTCT
CCACTATGACCTGAGGCAAGAGCACTTGATCAGGGGGGGAAGGGAAGGAT
GCGTGATTCCTCCTGCTGCAGTGTGGCCCTTGTCAGGACCTCTCAGGGAC
TTGCGGGCCTGCTCGCTGGCCCACAATCACGGGGGAGTCCGAGAACAGTT
AGAAGGCACAGGCCTCTCCTGCATCTGTGATGGCAAGAATGGGGAGTGGA
TCTCAGTGGGATCTTCCGGTGGCCAGGTAGTGGTGTTGGATAAGAGACTT
GGCGGGGGGAGACCTCTGTATCGGTGGAATGCCCACTCAAGCGTGGTCGA
GAGGGTATTCCCGATTTCCAGGAACCTTCTCCTAACCGTATCCCGAGATT
TGACGGCTGTGGTCTGGGACCTCAGCATCTCCATGACCGATCCCCTTTCG
GGCGTGCCAGTTCCTGCTGGCAGAAGGCTGTCCAGGGTGGTCGAGAACGG
AGGGATGGGGCTGAGGGACCGCAGCTTCTCCTCAGCTCCCATGCCTGTGG
AAGTCCCCCCCGCGAGGGTCTCCACGACTGTTGGGTTACCTCACTACGGC
CATGGGTTGTCGCCTGCCACAGTCCTGGTGACTGAGGGCTCCAGGGGCTG
CAGTGAGGATAGTTCAAACATAGCAATAGGAAGGGGTGGGGGGTGGGGGC
ATAGAGAAGATGGCCAACTAGCAGCCACCTTCACCTCCTCCTCCCCTCCC
TCTTCTCCCTCCCCCTCCTCGGCCTCCACGTTGCCGTTGCCATCCATGTG
CTCCTCCAATCCCTCGTGGCCTGTACTCCTTGCGATCTCGGGGAATCGTG
TCACAGCATCGCCGCTGACGTTCGCTGGAGTGTCGACGGCGGCACCCGGG
CAACAAGTGGCAAGAAGACCGGAAGGGGGAGCGTCGAGGGTTGGTGTGGG
GCAGACCAGGGAGGAGATAGTGACGAAGCTCGGCAAGCCTGGGAGGTTCT
CGGACCATTATTCTGGACACGACAAAAAGTATGCCAGTCTCGGG
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