mRNA_D-mesarthrocarpus_Contig1078.8.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig1078.8.1
Unique NamemRNA_D-mesarthrocarpus_Contig1078.8.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig1078.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig1078contigD-mesarthrocarpus_Contig1078:12630..13741 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size540
Hectar predicted targeting categoryother localisation
Exons2
Cds size540
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789211.0123565-CDS-D-mesarthrocarpus_Contig1078:12629..131071680789211.0123565-CDS-D-mesarthrocarpus_Contig1078:12629..13107Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1078 12630..13107 -
1680789211.0250375-CDS-D-mesarthrocarpus_Contig1078:13679..137411680789211.0250375-CDS-D-mesarthrocarpus_Contig1078:13679..13741Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1078 13680..13741 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig1078.8.1prot_D-mesarthrocarpus_Contig1078.8.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig1078 12630..13741 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig1078.8.1

>prot_D-mesarthrocarpus_Contig1078.8.1 ID=prot_D-mesarthrocarpus_Contig1078.8.1|Name=mRNA_D-mesarthrocarpus_Contig1078.8.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=180bp
QKGGGHRPPWRGGWGAPAGSRGSFPFPAPPLPKHRGGSKGDEAGDKGREQ
RREKGAKNAENDNGNKTHDGSNKGNSTGSNQSRLRATIAGKALPSVVGEF
VGRIIHRAVLNVANRPWRRSGLRLLIPGEAGRGKGSGRSRGGSSENKDPC
GKRGGEGKIRPWPAAEGAAVMMTRETRQEE
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mRNA from alignment at D-mesarthrocarpus_Contig1078:12630..13741-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig1078.8.1 ID=mRNA_D-mesarthrocarpus_Contig1078.8.1|Name=mRNA_D-mesarthrocarpus_Contig1078.8.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1112bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1078:12630..13741- (Discosporangium mesarthrocarpum MT17_79)
CAGAAAGGAGGAGGACACCGCCCGCCTTGGCGAGGGGGGTGGGGGGCTCC
AGCAGGGTCAAGGTATGGTGGATGAGGTAACTGCATCTTACTATATATGT
GTTCTTTGTACGTTGGAGTATCTCCTTGGTAAAATTGAACTGCAGAAGAA
AATATAGGGGTTTATGAGCTGGTGCAGGACTTAGGAAAGTGCGGGGGGGG
GGCATGATGTGTGTGTGTGTGTGTGAGGGTGCTGCCCATGAAAGATCCAA
CCAAACAAGAAATGTGCATGAAACCAGGGGAAAAGGCATAAAACCAGGGG
AAAAGGCATAAAACCAGGAAAAAAGGCATAAAACCAGGAAAAAAGGCATA
AAACCAGGGGAAAAGGCACTACACGAAGTGTGTCAACTTGACATTTTTGA
CGACTCATGATGAACAAAAAAACCATCACCACACAACGCCTTTTCTAGCG
ACCATGTCAAAATGCCCCTTCAGCTATCGTACACCTCTCACCCGGTCCCC
CCTGCCCCCCCCCATCCACAACCCTTTTGATCCACCCACCTGTTTCTCCA
CCTGTTCACGTGCTGGTCACGCCGCTCCCCATTCCTGGACGGTTCTTGGA
TCGTTCCTGGGCCTACGCACCCCATGTAATCCAGGGGATCCTTCCCCTTC
CCTGCCCCTCCGCTGCCAAAGCATAGAGGCGGTTCCAAAGGGGATGAAGC
GGGAGACAAGGGTCGAGAACAAAGAAGGGAAAAGGGGGCAAAGAACGCCG
AGAATGACAATGGCAACAAAACCCACGACGGCAGCAATAAGGGGAACAGC
ACTGGGAGCAACCAGAGTAGGCTCCGCGCCACCATTGCCGGAAAGGCCCT
ACCAAGCGTGGTGGGAGAATTTGTGGGGAGGATCATCCACCGGGCCGTTC
TGAATGTGGCCAATCGCCCCTGGAGACGCTCTGGCCTGAGGCTGTTGATC
CCCGGGGAAGCGGGGCGGGGTAAGGGCAGTGGCAGGTCCAGAGGTGGCAG
CAGCGAGAACAAGGACCCTTGTGGGAAACGCGGGGGTGAGGGCAAGATCA
GACCGTGGCCAGCTGCAGAAGGGGCAGCAGTAATGATGACAAGGGAGACC
AGGCAGGAGGAG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig1078:12630..13741-

>mRNA_D-mesarthrocarpus_Contig1078.8.1 ID=mRNA_D-mesarthrocarpus_Contig1078.8.1|Name=mRNA_D-mesarthrocarpus_Contig1078.8.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=540bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1078:12630..13741- (Discosporangium mesarthrocarpum MT17_79)
CAGAAAGGAGGAGGACACCGCCCGCCTTGGCGAGGGGGGTGGGGGGCTCC
AGCAGGGTCAAGGGGATCCTTCCCCTTCCCTGCCCCTCCGCTGCCAAAGC
ATAGAGGCGGTTCCAAAGGGGATGAAGCGGGAGACAAGGGTCGAGAACAA
AGAAGGGAAAAGGGGGCAAAGAACGCCGAGAATGACAATGGCAACAAAAC
CCACGACGGCAGCAATAAGGGGAACAGCACTGGGAGCAACCAGAGTAGGC
TCCGCGCCACCATTGCCGGAAAGGCCCTACCAAGCGTGGTGGGAGAATTT
GTGGGGAGGATCATCCACCGGGCCGTTCTGAATGTGGCCAATCGCCCCTG
GAGACGCTCTGGCCTGAGGCTGTTGATCCCCGGGGAAGCGGGGCGGGGTA
AGGGCAGTGGCAGGTCCAGAGGTGGCAGCAGCGAGAACAAGGACCCTTGT
GGGAAACGCGGGGGTGAGGGCAAGATCAGACCGTGGCCAGCTGCAGAAGG
GGCAGCAGTAATGATGACAAGGGAGACCAGGCAGGAGGAG
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