mRNA_D-mesarthrocarpus_Contig1078.7.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig1078.7.1
Unique NamemRNA_D-mesarthrocarpus_Contig1078.7.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig1078.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig1078contigD-mesarthrocarpus_Contig1078:10858..12072 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size300
Hectar predicted targeting categoryother localisation
Exons2
Cds size279
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789210.9534554-CDS-D-mesarthrocarpus_Contig1078:10857..109351680789210.9534554-CDS-D-mesarthrocarpus_Contig1078:10857..10935Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1078 10858..10935 -
1680789210.9638076-CDS-D-mesarthrocarpus_Contig1078:11852..120531680789210.9638076-CDS-D-mesarthrocarpus_Contig1078:11852..12053Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1078 11853..12053 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789210.9751039-UTR-D-mesarthrocarpus_Contig1078:12053..120721680789210.9751039-UTR-D-mesarthrocarpus_Contig1078:12053..12072Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig1078 12054..12072 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig1078.7.1prot_D-mesarthrocarpus_Contig1078.7.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig1078 10858..12053 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig1078.7.1

>prot_D-mesarthrocarpus_Contig1078.7.1 ID=prot_D-mesarthrocarpus_Contig1078.7.1|Name=mRNA_D-mesarthrocarpus_Contig1078.7.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=93bp
MWARRAAGGGLGSACWDNGSKDRVMEREAKGRKRGMGRGKWMVKPSLTPL
KTRAEWDPRFWVPVSPSPSSSVPLWPCGGHKRSRDCEPSHTFP
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mRNA from alignment at D-mesarthrocarpus_Contig1078:10858..12072-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig1078.7.1 ID=mRNA_D-mesarthrocarpus_Contig1078.7.1|Name=mRNA_D-mesarthrocarpus_Contig1078.7.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1215bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1078:10858..12072- (Discosporangium mesarthrocarpum MT17_79)
GGGGCGTACAGGAGGATCAATGTGGGCAAGGAGGGCTGCAGGGGGTGGTC
TTGGGAGTGCTTGTTGGGACAACGGGAGCAAGGACCGGGTAATGGAGAGG
GAAGCAAAGGGAAGGAAGAGGGGAATGGGGAGAGGGAAGTGGATGGTTAA
GCCCAGCCTGACTCCCCTCAAAACGAGAGCAGAATGGGACCCAAGGTTCT
GGGTGCCAGTGTCCCCATCGGTGGGTGGGGGTAGTGGTGAAGGGGGGTTG
TGATTCTTGCATCCCCGCTAATGTTGTTCCTTGCCTTTGGACACATGATC
GGACTTGTTGGTGGCAACCGCAGCAACTAGTTTGTCCCACCGACGTACAT
GACCAAGTGTGGGGACGGTTTCAAAGGGTCAGGTACCTCGATCAGCACTA
AGCACTAGAACACACTCAAAGAACCTCTGAGTATATACACATCCACCGTG
AAATCACTTTTTTGCTGCCACCTACTACTGACTGCACTATGACTGCCTAC
AAATCGGTGATAATGGGGTGGCAATCCGGCCTAGAAGAGGGGGCAATGTT
TTTAGAAGTACCCCTGCCTGCCCCAAAACACCCCCTACTGGACGGCACTT
CAGTGCACACTTTACATCATCTTCTGTTCCTCCCCTCACTTTTTTTTTTT
TACCTCTTCCGATGGAAGCATCGCACAAACTCATGCACTGTCATGTGGAT
GCATTGCCAAGACTCAACCCTTGGCTCACAGAAATTACTGCCACTCTCAC
CACCAAGATCCAGGCCCCGCACACAGTCAACCCTCACCCAACCCACCCTA
ACTCTCTTTCCACACCCATGTTTGGCCCTCCACCCTCCCCATCGCCTATC
CTACCACAACCTCTCCCCATCATCACCTCTTCTACCAAAAACCATCCCCA
TCCCACTACTATACCCCTATTCCACCACCATCTCTTATCCCACCACCATC
TCTTATCCCACCACCATCTCTTATCCCACCACCATCTCACATCCTCTCCC
CATCTCCCACCCTACTACAATATCACATCCCATTCCCACCTTCTTCCCAT
CCAACCACCTCCCATCCACCCACCATCTTCAACCCTGCTGCAATCTCCCG
TCCCACCGTCACTTTCCTTCCCACCATTACCACCCAGCCAAGTTCATCTG
TTCCTCTGTGGCCATGTGGGGGGCATAAACGATCTCGGGATTGTGAACCT
TCCCACACCTTCCCA
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig1078:10858..12072-

>mRNA_D-mesarthrocarpus_Contig1078.7.1 ID=mRNA_D-mesarthrocarpus_Contig1078.7.1|Name=mRNA_D-mesarthrocarpus_Contig1078.7.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=279bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1078:10858..12072- (Discosporangium mesarthrocarpum MT17_79)
ATGTGGGCAAGGAGGGCTGCAGGGGGTGGTCTTGGGAGTGCTTGTTGGGA
CAACGGGAGCAAGGACCGGGTAATGGAGAGGGAAGCAAAGGGAAGGAAGA
GGGGAATGGGGAGAGGGAAGTGGATGGTTAAGCCCAGCCTGACTCCCCTC
AAAACGAGAGCAGAATGGGACCCAAGGTTCTGGGTGCCAGTGTCCCCATC
GCCAAGTTCATCTGTTCCTCTGTGGCCATGTGGGGGGCATAAACGATCTC
GGGATTGTGAACCTTCCCACACCTTCCCA
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