mRNA_D-mesarthrocarpus_Contig1077.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig1077.2.1
Unique NamemRNA_D-mesarthrocarpus_Contig1077.2.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig1077.2.1 vs. uniprot
Match: UPI001CF2D10D (uncharacterized protein LOC114971351 n=2 Tax=Acropora TaxID=6127 RepID=UPI001CF2D10D)

HSP 1 Score: 58.9 bits (141), Expect = 1.750e-8
Identity = 30/70 (42.86%), Postives = 39/70 (55.71%), Query Frame = 1 
Query:    4 RIGVRHAFGKACNLWGFLDHKRNLKLGQNLVGDLHLVEALLTKIRTCEYGSQVTEPCREIPPYVEAYFML 213
            RI V   FG   N +GFLD K+NLK+G + VG ++ V ALL    TC YGS  +      PP +  YF +
Sbjct:  290 RIAVEWVFGDIVNYFGFLDFKKNLKIGLSPVGKMYCVCALLRNALTCLYGSSTSSFFELQPPSIHDYFQV 359
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig1077.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI001CF2D10D1.750e-842.86uncharacterized protein LOC114971351 n=2 Tax=Acrop... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig1077contigD-mesarthrocarpus_Contig1077:13262..13474 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog78898.MVEG_01652T0
PFAMsDDE_Tnp_4
Model size213
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.97e-07
EggNOG OGs2AWDH@1|root,2RZYI@2759|Eukaryota,3A38W@33154|Opisthokonta,3P75M@4751|Fungi
DescriptionMortierella verticillata NRRL 6337
Cds size213
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789210.0981858-CDS-D-mesarthrocarpus_Contig1077:13261..134741680789210.0981858-CDS-D-mesarthrocarpus_Contig1077:13261..13474Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1077 13262..13474 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig1077.2.1prot_D-mesarthrocarpus_Contig1077.2.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig1077 13262..13474 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig1077.2.1

>prot_D-mesarthrocarpus_Contig1077.2.1 ID=prot_D-mesarthrocarpus_Contig1077.2.1|Name=mRNA_D-mesarthrocarpus_Contig1077.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=71bp
HRIGVRHAFGKACNLWGFLDHKRNLKLGQNLVGDLHLVEALLTKIRTCEY
GSQVTEPCREIPPYVEAYFML
back to top

mRNA from alignment at D-mesarthrocarpus_Contig1077:13262..13474+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig1077.2.1 ID=mRNA_D-mesarthrocarpus_Contig1077.2.1|Name=mRNA_D-mesarthrocarpus_Contig1077.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=213bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1077:13262..13474+ (Discosporangium mesarthrocarpum MT17_79)
CATAGGATAGGTGTGAGACACGCATTCGGAAAAGCATGCAACCTCTGGGG
ATTCTTAGATCACAAAAGGAATTTGAAACTGGGGCAGAACCTAGTAGGTG
ACCTTCATTTGGTGGAAGCACTCTTGACAAAAATACGCACGTGCGAGTAT
GGTAGCCAAGTAACGGAGCCCTGCCGTGAAATCCCTCCCTACGTGGAGGC
CTACTTTATGCTA
back to top

Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig1077:13262..13474+

>mRNA_D-mesarthrocarpus_Contig1077.2.1 ID=mRNA_D-mesarthrocarpus_Contig1077.2.1|Name=mRNA_D-mesarthrocarpus_Contig1077.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=213bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1077:13262..13474+ (Discosporangium mesarthrocarpum MT17_79)
CATAGGATAGGTGTGAGACACGCATTCGGAAAAGCATGCAACCTCTGGGG
ATTCTTAGATCACAAAAGGAATTTGAAACTGGGGCAGAACCTAGTAGGTG
ACCTTCATTTGGTGGAAGCACTCTTGACAAAAATACGCACGTGCGAGTAT
GGTAGCCAAGTAACGGAGCCCTGCCGTGAAATCCCTCCCTACGTGGAGGC
CTACTTTATGCTA
back to top