mRNA_D-mesarthrocarpus_Contig10769.3.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10769.3.1
Unique NamemRNA_D-mesarthrocarpus_Contig10769.3.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10769.3.1 vs. uniprot
Match: A0A6H5JHG5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHG5_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 4.620e-18
Identity = 50/105 (47.62%), Postives = 68/105 (64.76%), Query Frame = 2 
Query:   53 VSPINVKDCLPQGG---SVAEG------VLWRSLTMRTALREAILSGDLKQASKMIQDKCPSLLHKREDLRFALKCQELIELIKKGELTAVLNLAQTELQAFREA 340
            V P+ V D L  GG   +   G       L  +L+ RT LR  ILSG+++ A+ M+Q + P LL KR D+RFALKCQE IEL+KKGE+TA ++LAQ +L  FR++
Sbjct:  642 VMPVPVTDLLADGGGGRAAGRGGKSRAVALAATLSFRTRLRREILSGNIRAATAMLQKERPGLLEKRADVRFALKCQEFIELVKKGEVTAAVSLAQRDLSRFRDS 746
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BLAST of mRNA_D-mesarthrocarpus_Contig10769.3.1 vs. uniprot
Match: D8LQC3_ECTSI (CTLH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQC3_ECTSI)

HSP 1 Score: 87.0 bits (214), Expect = 1.330e-17
Identity = 50/103 (48.54%), Postives = 68/103 (66.02%), Query Frame = 2 
Query:   59 PINVKDCLPQGGSV-AEGVLWRS--------LTMRTALREAILSGDLKQASKMIQDKCPSLLHKREDLRFALKCQELIELIKKGELTAVLNLAQTELQAFREA 340
            P+ V D L  GG   A G + +S        L+ RT LR  ILSG+++ A+ M+Q + P LL KR D+RFALKCQE IEL+KKGE+TA ++LAQ +L  FR++
Sbjct:    2 PVPVTDLLADGGGGGAAGRVGKSRAVALAATLSFRTKLRREILSGNIRAATTMLQRERPGLLEKRADVRFALKCQEFIELVKKGEVTAAVSLAQRDLSRFRDS 104
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BLAST of mRNA_D-mesarthrocarpus_Contig10769.3.1 vs. uniprot
Match: A0A1I7XIG7_HETBA (CTLH domain-containing protein n=1 Tax=Heterorhabditis bacteriophora TaxID=37862 RepID=A0A1I7XIG7_HETBA)

HSP 1 Score: 56.2 bits (134), Expect = 8.320e-7
Identity = 27/70 (38.57%), Postives = 45/70 (64.29%), Query Frame = 2 
Query:  119 RSLTMRTALREAILSGDLKQASKMIQDKCPSLLHKREDLRFALKCQELIELIKKGELTAVLNLAQTELQA 328
            ++L  R ++R AI+ G L  A + + + CP+LL +  ++RF L  Q LIE+I++G++ A L  AQT L +
Sbjct:  166 KNLDARMSIRNAIIEGRLDDAIREVSELCPTLLEENREVRFHLMQQNLIEMIRRGDMEASLQYAQTNLSS 235
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BLAST of mRNA_D-mesarthrocarpus_Contig10769.3.1 vs. uniprot
Match: A0A183G5L1_HELPZ (Uncharacterized protein n=1 Tax=Heligmosomoides polygyrus TaxID=6339 RepID=A0A183G5L1_HELPZ)

HSP 1 Score: 53.9 bits (128), Expect = 5.100e-6
Identity = 27/68 (39.71%), Postives = 44/68 (64.71%), Query Frame = 2 
Query:  119 RSLTMRTALREAILSGDLKQASKMIQDKCPSLLHKREDLRFALKCQELIELIKKGELTAVLNLAQTEL 322
            ++L  R  +R AI+ G L+ A K++++ CP+LL +  ++RF L  Q LIE+I++GE+   L  AQ  L
Sbjct:  186 KNLDARMNIRCAIIEGRLEDALKLVKELCPTLLEENREVRFHLMQQNLIEMIRRGEMEKSLEYAQENL 253
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BLAST of mRNA_D-mesarthrocarpus_Contig10769.3.1 vs. uniprot
Match: A0A3P6QJ45_CYLGO (CTLH domain-containing protein n=1 Tax=Cylicostephanus goldi TaxID=71465 RepID=A0A3P6QJ45_CYLGO)

HSP 1 Score: 52.0 bits (123), Expect = 5.650e-6
Identity = 25/68 (36.76%), Postives = 45/68 (66.18%), Query Frame = 2 
Query:  119 RSLTMRTALREAILSGDLKQASKMIQDKCPSLLHKREDLRFALKCQELIELIKKGELTAVLNLAQTEL 322
            ++L  R  +R AI+ G L+ A +++++ CP+LL +  ++RF L  Q +IE+I++GE+   L+ AQ  L
Sbjct:   24 KNLDARMNIRCAIIEGRLEDALRLVKELCPTLLDENREVRFHLMQQNIIEMIRRGEMEKSLDYAQENL 91
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BLAST of mRNA_D-mesarthrocarpus_Contig10769.3.1 vs. uniprot
Match: A0A016W7U7_9BILA (Uncharacterized protein (Fragment) n=3 Tax=Ancylostoma ceylanicum TaxID=53326 RepID=A0A016W7U7_9BILA)

HSP 1 Score: 52.0 bits (123), Expect = 1.010e-5
Identity = 25/68 (36.76%), Postives = 45/68 (66.18%), Query Frame = 2 
Query:  119 RSLTMRTALREAILSGDLKQASKMIQDKCPSLLHKREDLRFALKCQELIELIKKGELTAVLNLAQTEL 322
            ++L  R  +R AI+ G L+ A +++++ CP+LL +  ++RF L  Q +IE+I++GE+   L+ AQ  L
Sbjct:   62 KNLDARMNIRCAIIEGRLEDALRLVKELCPTLLDENREVRFHLMQQNIIEMIRRGEMEKSLDYAQENL 129
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BLAST of mRNA_D-mesarthrocarpus_Contig10769.3.1 vs. uniprot
Match: A0A0D8YBN5_DICVI (LisH n=1 Tax=Dictyocaulus viviparus TaxID=29172 RepID=A0A0D8YBN5_DICVI)

HSP 1 Score: 53.1 bits (126), Expect = 1.020e-5
Identity = 27/68 (39.71%), Postives = 43/68 (63.24%), Query Frame = 2 
Query:  119 RSLTMRTALREAILSGDLKQASKMIQDKCPSLLHKREDLRFALKCQELIELIKKGELTAVLNLAQTEL 322
            ++L  R  +R AI+ G L+ A +M+++ CP+LL +  ++RF L  Q LIE+I+ GE+   L  AQ  L
Sbjct:  162 KNLDARMNIRCAIIEGRLEDALRMVKELCPTLLEENREVRFHLMQQNLIEMIRNGEMEKSLEYAQENL 229
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BLAST of mRNA_D-mesarthrocarpus_Contig10769.3.1 vs. uniprot
Match: A0A0N4W3B1_HAEPC (Uncharacterized protein n=1 Tax=Haemonchus placei TaxID=6290 RepID=A0A0N4W3B1_HAEPC)

HSP 1 Score: 53.1 bits (126), Expect = 1.050e-5
Identity = 27/68 (39.71%), Postives = 43/68 (63.24%), Query Frame = 2 
Query:  119 RSLTMRTALREAILSGDLKQASKMIQDKCPSLLHKREDLRFALKCQELIELIKKGELTAVLNLAQTEL 322
            ++L  R  +R AI+ G L  A +++++ CP+LL +  D+RF L  Q LIE+I++GE+   L  AQ  L
Sbjct:  194 KNLDARMNIRCAIIEGRLDDALRLVKELCPTLLDENRDVRFHLMQQNLIEMIRRGEMERSLEYAQENL 261
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig10769.3.1 vs. uniprot
Match: A0A7I5ED81_HAECO (Uncharacterized protein n=1 Tax=Haemonchus contortus TaxID=6289 RepID=A0A7I5ED81_HAECO)

HSP 1 Score: 53.1 bits (126), Expect = 1.050e-5
Identity = 27/68 (39.71%), Postives = 43/68 (63.24%), Query Frame = 2 
Query:  119 RSLTMRTALREAILSGDLKQASKMIQDKCPSLLHKREDLRFALKCQELIELIKKGELTAVLNLAQTEL 322
            ++L  R  +R AI+ G L  A +++++ CP+LL +  D+RF L  Q LIE+I++GE+   L  AQ  L
Sbjct:  152 KNLDARMNIRCAIIEGRLDDALRLVKELCPTLLDENRDVRFHLMQQNLIEMIRRGEMERSLEYAQENL 219
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig10769.3.1 vs. uniprot
Match: A0A7S1TYD2_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TYD2_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 1.170e-5
Identity = 27/66 (40.91%), Postives = 41/66 (62.12%), Query Frame = 2 
Query:  125 LTMRTALREAILSGDLKQASKMIQDKCPSLLHKREDLRFALKCQELIELIKKGELTAVLNLAQTEL 322
            ++ R  +R+ IL GD+    + I+     LL +  DLRFAL+ Q+L+++I KG + A L  AQTEL
Sbjct:  103 MSTRVEIRKLILGGDVAAGIRRIEQADARLLEELPDLRFALRRQQLLDIISKGRIDAALTFAQTEL 168
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10769.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A6H5JHG5_9PHAE4.620e-1847.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LQC3_ECTSI1.330e-1748.54CTLH domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A1I7XIG7_HETBA8.320e-738.57CTLH domain-containing protein n=1 Tax=Heterorhabd... [more]
A0A183G5L1_HELPZ5.100e-639.71Uncharacterized protein n=1 Tax=Heligmosomoides po... [more]
A0A3P6QJ45_CYLGO5.650e-636.76CTLH domain-containing protein n=1 Tax=Cylicosteph... [more]
A0A016W7U7_9BILA1.010e-536.76Uncharacterized protein (Fragment) n=3 Tax=Ancylos... [more]
A0A0D8YBN5_DICVI1.020e-539.71LisH n=1 Tax=Dictyocaulus viviparus TaxID=29172 Re... [more]
A0A0N4W3B1_HAEPC1.050e-539.71Uncharacterized protein n=1 Tax=Haemonchus placei ... [more]
A0A7I5ED81_HAECO1.050e-539.71Uncharacterized protein n=1 Tax=Haemonchus contort... [more]
A0A7S1TYD2_9STRA1.170e-540.91Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10769contigD-mesarthrocarpus_Contig10769:1694..2971 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog5786.XP_003284114.1
PFAMsCLTH,LisH
Model size360
Max annot lvl554915|Amoebozoa
Hectar predicted targeting categoryother localisation
Exons3
Evalue9.89e-07
EggNOG OGsKOG2659@1|root,KOG2659@2759|Eukaryota,3XAWH@554915|Amoebozoa
DescriptionCT11-RanBPM
Cds size351
COG categoryZ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789209.8546357-CDS-D-mesarthrocarpus_Contig10769:1693..17381680789209.8546357-CDS-D-mesarthrocarpus_Contig10769:1693..1738Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10769 1694..1738 -
1680789209.8652947-CDS-D-mesarthrocarpus_Contig10769:2144..22551680789209.8652947-CDS-D-mesarthrocarpus_Contig10769:2144..2255Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10769 2145..2255 -
1680789209.877567-CDS-D-mesarthrocarpus_Contig10769:2769..29641680789209.877567-CDS-D-mesarthrocarpus_Contig10769:2769..2964Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10769 2770..2964 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789209.8946161-UTR-D-mesarthrocarpus_Contig10769:2964..29711680789209.8946161-UTR-D-mesarthrocarpus_Contig10769:2964..2971Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig10769 2965..2971 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10769.3.1prot_D-mesarthrocarpus_Contig10769.3.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10769 1694..2964 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10769.3.1

>prot_D-mesarthrocarpus_Contig10769.3.1 ID=prot_D-mesarthrocarpus_Contig10769.3.1|Name=mRNA_D-mesarthrocarpus_Contig10769.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=117bp
MGMAHVPDSLSILQVVSPINVKDCLPQGGSVAEGVLWRSLTMRTALREAI
LSGDLKQASKMIQDKCPSLLHKREDLRFALKCQELIELIKKGELTAVLNL
AQTELQAFREASGSSEG
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mRNA from alignment at D-mesarthrocarpus_Contig10769:1694..2971-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10769.3.1 ID=mRNA_D-mesarthrocarpus_Contig10769.3.1|Name=mRNA_D-mesarthrocarpus_Contig10769.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1278bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10769:1694..2971- (Discosporangium mesarthrocarpum MT17_79)
CAGCCCGATGGGCATGGCGCATGTCCCCGACAGCCTCTCCATCCTCCAGG
TGGTCTCTCCAATAAACGTCAAGGACTGCTTGCCGCAGGGGGGGTCTGTG
GCGGAGGGCGTCTTGTGGAGGTCCCTGACGATGAGGACAGCCTTAAGGGA
GGCCATCCTGTCGGGGGACCTCAAGCAGGCCAGCAAGATGATCCAGGACA
AGGTAAGGGTGTGATCTGGAATGGATCCAGGTGTGGGTGGGGGAGTTTGG
CTGGGACATATGAGTGGTCAATGTGTGCAGGCATGTGGCCTTTACTTCCC
AGGCACCTGTCTCAGAATGACGCCCCACTTGATCATGCACTATCACCCCC
TGCCCACTCCGACCCTGATCCGAACCCTAACCCTAACCCTAACCCCCACC
AACCCTGAACCTAACCGTTTCCCTAATCTGAATCATCTGCTCCGTAAAAC
CCGTGAAGGTCCTTGTCCGCTAGCCCCTGACAACCCTATTCAGTTCGGTC
AGAATCGCTGACTCGAGTAGACCATGCACGATTTTTTTTTTTTTATCGCT
TTTGATGCTGCCCTCCTCCCTTCCGTCGGCAGTGACCCACCCCAGCCAGC
CCTTGCCATTTTCCTCGCCGAGAAAGCAGCTTGATTACCTACTTGGTACT
GGGGTGTGTGTGTATGTGTGTTTCTATTTTTCTTTTTTTGCAATCGCGGC
CCCTTTCGCTTGGCAGTGCCCGAGCCTGCTTCATAAGAGAGAGGACCTGA
GGTTTGCCTTGAAGTGCCAGGAGCTCATTGAGTTGATCAAGAAGGGAGAG
CTCACGGCGGTGTTGAACCTGGCCCAGGTTTGTGGGTGGGGCAGGGGCAG
GGGCAGGGTTGAATCAGGAGGGGCATCAGGAACCAAGCATTTTTCCCTTC
AAACAGCCCCTGTCAGGCCGTCAACAAGCCTGTCTTGACAACACAAAACG
AGAGGCCCACAGTTGCCGCGTGTGTAACCTAGAGGAGCTCCACATGGACA
GGAGAGGTCTATCTCAGGATGACCACTCTCATGCGCGTAGGGCGTGCTGC
TGTTGCACTGCTGTTAGGGGTTAGGGTTCAAGGTGATGGTAGGCAGCACT
CCCCTTTGTAACTAATGTAGCATGGTGCTCCCCAACCCCACGCCCTCTCT
CCCCTCCCCCTCTCCCCTCCTCTCTCCCCACCCCCTCTCCCAACACTCAC
CTGGCTACGGTTGGGATTCCACCCTTCTGTCAGACTGAGCTGCAGGCCTT
CCGTGAGGCCAGCGGCAGTAGTGAGGGG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10769:1694..2971-

>mRNA_D-mesarthrocarpus_Contig10769.3.1 ID=mRNA_D-mesarthrocarpus_Contig10769.3.1|Name=mRNA_D-mesarthrocarpus_Contig10769.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=351bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10769:1694..2971- (Discosporangium mesarthrocarpum MT17_79)
ATGGGCATGGCGCATGTCCCCGACAGCCTCTCCATCCTCCAGGTGGTCTC
TCCAATAAACGTCAAGGACTGCTTGCCGCAGGGGGGGTCTGTGGCGGAGG
GCGTCTTGTGGAGGTCCCTGACGATGAGGACAGCCTTAAGGGAGGCCATC
CTGTCGGGGGACCTCAAGCAGGCCAGCAAGATGATCCAGGACAAGTGCCC
GAGCCTGCTTCATAAGAGAGAGGACCTGAGGTTTGCCTTGAAGTGCCAGG
AGCTCATTGAGTTGATCAAGAAGGGAGAGCTCACGGCGGTGTTGAACCTG
GCCCAGACTGAGCTGCAGGCCTTCCGTGAGGCCAGCGGCAGTAGTGAGGG
G
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