mRNA_D-mesarthrocarpus_Contig10761.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10761.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10761.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10761.1.1 vs. uniprot
Match: D8LRY3_ECTSI (DNA-directed RNA polymerase subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRY3_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 4.650e-13
Identity = 27/29 (93.10%), Postives = 28/29 (96.55%), Query Frame = 1 
Query:    1 RCSTCDCTYTGIGGNQVNDCPGHFGHMEV 87
            RC TCDCTYTGIGGNQVNDCPGHFGHME+
Sbjct:   77 RCRTCDCTYTGIGGNQVNDCPGHFGHMEL 105
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BLAST of mRNA_D-mesarthrocarpus_Contig10761.1.1 vs. uniprot
Match: A0A6H5L9Y2_9PHAE (DNA-directed RNA polymerase subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9Y2_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 4.650e-13
Identity = 27/29 (93.10%), Postives = 28/29 (96.55%), Query Frame = 1 
Query:    1 RCSTCDCTYTGIGGNQVNDCPGHFGHMEV 87
            RC TCDCTYTGIGGNQVNDCPGHFGHME+
Sbjct:   77 RCRTCDCTYTGIGGNQVNDCPGHFGHMEL 105
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BLAST of mRNA_D-mesarthrocarpus_Contig10761.1.1 vs. uniprot
Match: A0A0W8DAF9_PHYNI (DNA-directed RNA polymerase subunit n=3 Tax=Oomycota TaxID=4762 RepID=A0A0W8DAF9_PHYNI)

HSP 1 Score: 56.6 bits (135), Expect = 2.610e-8
Identity = 22/29 (75.86%), Postives = 26/29 (89.66%), Query Frame = 1 
Query:    1 RCSTCDCTYTGIGGNQVNDCPGHFGHMEV 87
            RC TCDCTY+G GG +VNDCPGHFGH+E+
Sbjct:   78 RCKTCDCTYSGSGG-KVNDCPGHFGHIEL 105
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BLAST of mRNA_D-mesarthrocarpus_Contig10761.1.1 vs. uniprot
Match: H3GA78_PHYRM (DNA-directed RNA polymerase subunit n=30 Tax=Oomycota TaxID=4762 RepID=H3GA78_PHYRM)

HSP 1 Score: 56.6 bits (135), Expect = 2.610e-8
Identity = 22/29 (75.86%), Postives = 26/29 (89.66%), Query Frame = 1 
Query:    1 RCSTCDCTYTGIGGNQVNDCPGHFGHMEV 87
            RC TCDCTY+G GG +VNDCPGHFGH+E+
Sbjct:   78 RCKTCDCTYSGSGG-KVNDCPGHFGHIEL 105
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BLAST of mRNA_D-mesarthrocarpus_Contig10761.1.1 vs. uniprot
Match: A0A2D4CJY5_PYTIN (DNA-directed RNA polymerase subunit (Fragment) n=2 Tax=Oomycota TaxID=4762 RepID=A0A2D4CJY5_PYTIN)

HSP 1 Score: 56.6 bits (135), Expect = 2.620e-8
Identity = 22/29 (75.86%), Postives = 26/29 (89.66%), Query Frame = 1 
Query:    1 RCSTCDCTYTGIGGNQVNDCPGHFGHMEV 87
            RC TCDCTY+G GG +VNDCPGHFGH+E+
Sbjct:   78 RCKTCDCTYSGSGG-KVNDCPGHFGHIEL 105
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BLAST of mRNA_D-mesarthrocarpus_Contig10761.1.1 vs. uniprot
Match: A0A7S3Y9D7_HETAK (DNA-directed RNA polymerase (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y9D7_HETAK)

HSP 1 Score: 53.5 bits (127), Expect = 1.370e-7
Identity = 20/30 (66.67%), Postives = 25/30 (83.33%), Query Frame = 1 
Query:    1 RCSTCDCTYTGIGGN-QVNDCPGHFGHMEV 87
            RC TCDC+Y+G GG   +NDCPGHFGH+E+
Sbjct:   80 RCKTCDCSYSGGGGGVSINDCPGHFGHIEL 109
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BLAST of mRNA_D-mesarthrocarpus_Contig10761.1.1 vs. uniprot
Match: A0A1V9Z1K8_9STRA (DNA-directed RNA polymerase subunit n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9Z1K8_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 1.710e-7
Identity = 21/29 (72.41%), Postives = 25/29 (86.21%), Query Frame = 1 
Query:    1 RCSTCDCTYTGIGGNQVNDCPGHFGHMEV 87
            RC TCDCTY+G G  +VNDCPGHFGH+E+
Sbjct:   78 RCKTCDCTYSGSGA-KVNDCPGHFGHIEL 105
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BLAST of mRNA_D-mesarthrocarpus_Contig10761.1.1 vs. uniprot
Match: A0A024UAL5_9STRA (DNA-directed RNA polymerase subunit n=15 Tax=Aphanomyces TaxID=100860 RepID=A0A024UAL5_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 1.710e-7
Identity = 21/29 (72.41%), Postives = 25/29 (86.21%), Query Frame = 1 
Query:    1 RCSTCDCTYTGIGGNQVNDCPGHFGHMEV 87
            RC TCDCTY+G G  +VNDCPGHFGH+E+
Sbjct:   78 RCKTCDCTYSGSGA-KVNDCPGHFGHIEL 105
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BLAST of mRNA_D-mesarthrocarpus_Contig10761.1.1 vs. uniprot
Match: A0A425CUV4_9STRA (DNA-directed RNA polymerase subunit n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A425CUV4_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 1.710e-7
Identity = 21/29 (72.41%), Postives = 25/29 (86.21%), Query Frame = 1 
Query:    1 RCSTCDCTYTGIGGNQVNDCPGHFGHMEV 87
            RC TCDCTY+G G  +VNDCPGHFGH+E+
Sbjct:   78 RCKTCDCTYSGSGA-KVNDCPGHFGHIEL 105
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig10761.1.1 vs. uniprot
Match: A0A396ZZC1_9STRA (DNA-directed RNA polymerase subunit n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A396ZZC1_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 1.720e-7
Identity = 21/29 (72.41%), Postives = 25/29 (86.21%), Query Frame = 1 
Query:    1 RCSTCDCTYTGIGGNQVNDCPGHFGHMEV 87
            RC TCDCTY+G G  +VNDCPGHFGH+E+
Sbjct:   78 RCKTCDCTYSGSGA-KVNDCPGHFGHIEL 105
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10761.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D8LRY3_ECTSI4.650e-1393.10DNA-directed RNA polymerase subunit n=2 Tax=Ectoca... [more]
A0A6H5L9Y2_9PHAE4.650e-1393.10DNA-directed RNA polymerase subunit n=1 Tax=Ectoca... [more]
A0A0W8DAF9_PHYNI2.610e-875.86DNA-directed RNA polymerase subunit n=3 Tax=Oomyco... [more]
H3GA78_PHYRM2.610e-875.86DNA-directed RNA polymerase subunit n=30 Tax=Oomyc... [more]
A0A2D4CJY5_PYTIN2.620e-875.86DNA-directed RNA polymerase subunit (Fragment) n=2... [more]
A0A7S3Y9D7_HETAK1.370e-766.67DNA-directed RNA polymerase (Fragment) n=1 Tax=Het... [more]
A0A1V9Z1K8_9STRA1.710e-772.41DNA-directed RNA polymerase subunit n=4 Tax=Saprol... [more]
A0A024UAL5_9STRA1.710e-772.41DNA-directed RNA polymerase subunit n=15 Tax=Aphan... [more]
A0A425CUV4_9STRA1.710e-772.41DNA-directed RNA polymerase subunit n=2 Tax=Aphano... [more]
A0A396ZZC1_9STRA1.720e-772.41DNA-directed RNA polymerase subunit n=3 Tax=Aphano... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10761contigD-mesarthrocarpus_Contig10761:325..432 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LRY3
Preferred nameRPB1
PFAMsRNA_pol_Rpb1_1,RNA_pol_Rpb1_2,RNA_pol_Rpb1_3,RNA_pol_Rpb1_4,RNA_pol_Rpb1_5,RNA_pol_Rpb1_6,RNA_pol_Rpb1_7,RNA_pol_Rpb1_R
Model size108
Max annot lvl2759|Eukaryota
KEGG rclassRC02795
KEGG koko:K03006
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,ko05016,ko05168,ko05169,map00230,map00240,map01100,map03020,map05016,map05168,map05169
KEGG ModuleM00180
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000428,GO:0000731,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005665,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006301,GO:0006351,GO:0006366,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0010494,GO:0016070,GO:0016591,GO:0018130,GO:0019438,GO:0019985,GO:0030880,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0035770,GO:0036464,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0055029,GO:0061695,GO:0070013,GO:0071704,GO:0071897,GO:0090304,GO:0097159,GO:0097659,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1990234,GO:1990904
Exons1
Evalue7.62e-14
EggNOG OGsCOG0086@1|root,KOG0260@2759|Eukaryota
EC2.7.7.6
DescriptionDNA-directed 5'-3' RNA polymerase activity
Cds size108
COG categoryK
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789209.5038745-CDS-D-mesarthrocarpus_Contig10761:324..4321680789209.5038745-CDS-D-mesarthrocarpus_Contig10761:324..432Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10761 325..432 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10761.1.1prot_D-mesarthrocarpus_Contig10761.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10761 325..432 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10761.1.1

>prot_D-mesarthrocarpus_Contig10761.1.1 ID=prot_D-mesarthrocarpus_Contig10761.1.1|Name=mRNA_D-mesarthrocarpus_Contig10761.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=36bp
RCSTCDCTYTGIGGNQVNDCPGHFGHMEVRVRARG*
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mRNA from alignment at D-mesarthrocarpus_Contig10761:325..432-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10761.1.1 ID=mRNA_D-mesarthrocarpus_Contig10761.1.1|Name=mRNA_D-mesarthrocarpus_Contig10761.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=108bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10761:325..432- (Discosporangium mesarthrocarpum MT17_79)
AGGTGCTCCACATGTGACTGCACATACACGGGAATAGGAGGCAATCAGGT
CAATGACTGCCCAGGCCACTTCGGACACATGGAGGTGAGGGTTAGGGCTA
GGGGTTAG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10761:325..432-

>mRNA_D-mesarthrocarpus_Contig10761.1.1 ID=mRNA_D-mesarthrocarpus_Contig10761.1.1|Name=mRNA_D-mesarthrocarpus_Contig10761.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=108bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10761:325..432- (Discosporangium mesarthrocarpum MT17_79)
AGGTGCTCCACATGTGACTGCACATACACGGGAATAGGAGGCAATCAGGT
CAATGACTGCCCAGGCCACTTCGGACACATGGAGGTGAGGGTTAGGGCTA
GGGGTTAG
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