mRNA_D-mesarthrocarpus_Contig10752.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10752.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10752.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10752.1.1 vs. uniprot
Match: A0A7S3LKZ9_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LKZ9_9STRA)

HSP 1 Score: 47.8 bits (112), Expect = 7.650e-5
Identity = 29/44 (65.91%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:   25 NACVPASQRGALNGLAMALGSVGKAAGPTLCSLIFAWSISSPSS 156
            NACV +S+RGA+NGL MALGSV KA GP   + IFAWSI+S +S
Sbjct:  459 NACV-SSERGAMNGLVMALGSVFKAVGPLAGAEIFAWSINSGNS 501
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10752.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3LKZ9_9STRA7.650e-565.91Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10752contigD-mesarthrocarpus_Contig10752:113..271 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LRH7
PFAMsMFS_1
Model size159
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue4.3e-06
EggNOG OGsKOG2615@1|root,KOG2615@2759|Eukaryota
Descriptionmajor facilitator superfamily
Cds size150
COG categoryI
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789208.8259602-UTR-D-mesarthrocarpus_Contig10752:112..1211680789208.8259602-UTR-D-mesarthrocarpus_Contig10752:112..121Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig10752 113..121 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789208.842958-CDS-D-mesarthrocarpus_Contig10752:121..2711680789208.842958-CDS-D-mesarthrocarpus_Contig10752:121..271Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10752 122..271 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10752.1.1prot_D-mesarthrocarpus_Contig10752.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10752 122..271 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10752.1.1

>prot_D-mesarthrocarpus_Contig10752.1.1 ID=prot_D-mesarthrocarpus_Contig10752.1.1|Name=mRNA_D-mesarthrocarpus_Contig10752.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=50bp
MALSTNACVPASQRGALNGLAMALGSVGKAAGPTLCSLIFAWSISSPSSS
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mRNA from alignment at D-mesarthrocarpus_Contig10752:113..271+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10752.1.1 ID=mRNA_D-mesarthrocarpus_Contig10752.1.1|Name=mRNA_D-mesarthrocarpus_Contig10752.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=159bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10752:113..271+ (Discosporangium mesarthrocarpum MT17_79)
TTTGTGACCATGGCCCTCAGTACGAATGCCTGCGTTCCTGCCTCTCAGAG
GGGAGCCCTCAATGGCCTGGCCATGGCGCTGGGGTCCGTGGGGAAGGCTG
CTGGCCCCACCCTCTGTTCCCTGATCTTTGCGTGGTCCATTTCCTCCCCA
TCCTCGTCG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10752:113..271+

>mRNA_D-mesarthrocarpus_Contig10752.1.1 ID=mRNA_D-mesarthrocarpus_Contig10752.1.1|Name=mRNA_D-mesarthrocarpus_Contig10752.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=150bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10752:113..271+ (Discosporangium mesarthrocarpum MT17_79)
ATGGCCCTCAGTACGAATGCCTGCGTTCCTGCCTCTCAGAGGGGAGCCCT
CAATGGCCTGGCCATGGCGCTGGGGTCCGTGGGGAAGGCTGCTGGCCCCA
CCCTCTGTTCCCTGATCTTTGCGTGGTCCATTTCCTCCCCATCCTCGTCG
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