mRNA_D-mesarthrocarpus_Contig1075.3.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig1075.3.1
Unique NamemRNA_D-mesarthrocarpus_Contig1075.3.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig1075.3.1 vs. uniprot
Match: D8LJF0_ECTSI (C2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJF0_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 2.210e-8
Identity = 32/47 (68.09%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:    1 EGVEEGVVDARVWARVVATVVVPPGSLGVLLDNRVKDRPVVKEILGQ 141
            +GV E V DA++WARV ATV VPPG LGV+LD  V DRPVV EI GQ
Sbjct:  273 DGVSE-VADAKIWARVQATVTVPPGPLGVVLDGEVGDRPVVLEIPGQ 318
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BLAST of mRNA_D-mesarthrocarpus_Contig1075.3.1 vs. uniprot
Match: A0A6H5KM70_9PHAE (C2 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM70_9PHAE)

HSP 1 Score: 51.2 bits (121), Expect = 3.870e-5
Identity = 29/50 (58.00%), Postives = 32/50 (64.00%), Query Frame = 1 
Query:   19 VVDARVWARVVATV---------VVPPGSLGVLLDNRVKDRPVVKEILGQ 141
            V DA++WARV ATV          VPPG LGV+LD  V DRPVV EI GQ
Sbjct:  149 VADAKIWARVQATVRDVIGGFGVTVPPGPLGVVLDGEVGDRPVVLEIPGQ 198
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig1075.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LJF0_ECTSI2.210e-868.09C2 domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A6H5KM70_9PHAE3.870e-558.00C2 domain-containing protein (Fragment) n=1 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig1075contigD-mesarthrocarpus_Contig1075:5218..7032 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LJF0
PFAMsC2,DUF4782,GRAM
Model size325
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.62e-09
EggNOG OGsKOG1032@1|root,KOG1032@2759|Eukaryota
Descriptionintracellular sterol transport
Cds size324
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789208.1462083-CDS-D-mesarthrocarpus_Contig1075:5218..54041680789208.1462083-CDS-D-mesarthrocarpus_Contig1075:5218..5404Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1075 5219..5404 -
1680789208.1589806-CDS-D-mesarthrocarpus_Contig1075:6894..70321680789208.1589806-CDS-D-mesarthrocarpus_Contig1075:6894..7032Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1075 6895..7032 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig1075.3.1prot_D-mesarthrocarpus_Contig1075.3.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig1075 5219..7032 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig1075.3.1

>prot_D-mesarthrocarpus_Contig1075.3.1 ID=prot_D-mesarthrocarpus_Contig1075.3.1|Name=mRNA_D-mesarthrocarpus_Contig1075.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=108bp
EGVEEGVVDARVWARVVATVVVPPGSLGVLLDNRVKDRPVVKEILGQREL
ETPPSDAPPARTRKRDQAMRLLGIKPKHPPQTPSPAEPGGAQQAGADWGP
TVWGGTVG
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mRNA from alignment at D-mesarthrocarpus_Contig1075:5218..7032-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig1075.3.1 ID=mRNA_D-mesarthrocarpus_Contig1075.3.1|Name=mRNA_D-mesarthrocarpus_Contig1075.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1815bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1075:5218..7032- (Discosporangium mesarthrocarpum MT17_79)
GAGGGGGTGGAGGAGGGGGTGGTGGATGCAAGGGTGTGGGCGAGGGTTGT
TGCGACAGTGGTTGTTCCACCAGGGTCACTGGGTGTGCTACTGGACAACC
GCGTCAAGGATCGGCCTGTGGTTAAGGAGATACTGGGGGTGAGTGTTTTT
TAGGGTGAGGTGGCAATGGTGATCATGGTAAGGGCATGGTGCCGGTGGGG
GGTGTCTCCGAAGATGGAAGGCTTTTGGTCGAGTTCCTCCTGTCTTTTTT
AGTTGCAGTGATAGGACCTGAGTATCGAGCCTAGAGCTACAGTAGAGCTA
CAGTAGAGCTACAGTAAAGCTACAGTAGAGCTACAGTAGAGCTACAGTAG
AGCCACAGTAGAGCAACTGTAGAGCAACTGTAGAGCTGGCTCTCATGCAC
CAGCACACTTCGCTAGCTTTAAAGTGTTAGGGAGATGAATTTGCAACAAC
CATGGCGTGATGGTATGCATTGAACTTTGGAATGTGAGGGATATATATGT
GCAACAAACAGGGCGAGATGGAGTCTAGTGGGTGAAATGAGGCCCTGCTG
CGTGTGTGGCTGCAGCTTTCATTGATAGTGTGCTTAAAGGCAACAGGATC
AGTCAACCACTTGCTGTCATATCTTTTTGGTGGGCATATACCACTGCTTG
CAAGCACTCCAACGTTTTTGTGCTTCAATTCTACCTTTCCTGTCCACTGA
TGCAATTAATTGCAGTGAAAATATGCCGATATGCCAGTTTCTCCTCAACG
TCGATTAGTTAGCACAGTTCAGCCAATTTTGCCGATTGCAAATGTGTTCA
AACTCACTTTTTTTCTTTTTTTTTGCTGGCGTTCAGGGATTAAAAGAAAG
CACTAGAACATCCGCCGGCACAGGTTGATCTGTTGGCTTGATACAATTCG
ATTAGTTGATGTACACAGTCAACGAGTATGATTGGTGCCGGTTCAGGACC
CCACGGATTGGGGGATGGGTTATTTAGACTCAATTCTTTCCGTGGCTGAT
GCCTCATGTGGTTGAGGAGGCTGCAATCGAAGACAAGTGCACTCAGCAAG
AAGATGCCAAAGCACACTGATACCATAACACTTTGCCATAAAGTACACGT
GTACCATTCCGTAAGCTCTTCACCTCATGACCCTCTTACAGAGACTTCTG
GTCCACAGACGTTTGCTCAAGGTAGAAATGCAGTGGGTTCGCTGGGGGCA
TGCATAGGTGACTTGCTGTGAGAATCAGCAACTGAGATTCAACTGTATCA
CGGTGCATGCGCATAGACTCTATACCTTATACTTGGACCATATGCTGCAG
TACTTGTGTGCAATTAGATGATCTCAGGGGAAATGTGGTAGCTGCTAGAT
GCTCCAGGCTCAGACAACGTATAGGAGGGCATTCCTCTTCCCCCACCCAT
GTGACTGTACACTAGGCTGTTGTTATTGTTGCTACCGTTGTTCATTATTG
TTGATGAAACCCAAAGAGCTCCGGAGCACAACAACAATAATGCCCAGAAA
AAAGTAAGGTCATGCCAAATGCCCAGAGCTCCATCACCAGGCCCAATTAT
CTATCACTCACATAAGCACACGAGCACACCAATCATGTGTCTCCTTCCCC
AACAAACACTTGTCCGTGGCCCTCTCAGCAACGGGAACTGGAAACACCAC
CGTCAGATGCCCCCCCTGCCCGGACCAGGAAGCGCGACCAAGCAATGCGC
CTCCTGGGCATAAAGCCCAAGCATCCCCCCCAAACCCCGTCCCCCGCGGA
GCCTGGTGGAGCCCAGCAGGCAGGGGCTGACTGGGGGCCAACGGTGTGGG
GGGGCACGGTGGGGG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig1075:5218..7032-

>mRNA_D-mesarthrocarpus_Contig1075.3.1 ID=mRNA_D-mesarthrocarpus_Contig1075.3.1|Name=mRNA_D-mesarthrocarpus_Contig1075.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=324bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1075:5218..7032- (Discosporangium mesarthrocarpum MT17_79)
GAGGGGGTGGAGGAGGGGGTGGTGGATGCAAGGGTGTGGGCGAGGGTTGT
TGCGACAGTGGTTGTTCCACCAGGGTCACTGGGTGTGCTACTGGACAACC
GCGTCAAGGATCGGCCTGTGGTTAAGGAGATACTGGGGCAACGGGAACTG
GAAACACCACCGTCAGATGCCCCCCCTGCCCGGACCAGGAAGCGCGACCA
AGCAATGCGCCTCCTGGGCATAAAGCCCAAGCATCCCCCCCAAACCCCGT
CCCCCGCGGAGCCTGGTGGAGCCCAGCAGGCAGGGGCTGACTGGGGGCCA
ACGGTGTGGGGGGGCACGGTGGGG
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