mRNA_D-mesarthrocarpus_Contig10720.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10720.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10720.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10720.1.1 vs. uniprot
Match: A0A6H5KF53_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF53_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 5.100e-16
Identity = 43/87 (49.43%), Postives = 58/87 (66.67%), Query Frame = 1 
Query:   64 PRDRCLVSCSLRGSTFLAGEEVSGVIKLTHQDGEEDHVMVDTVTVEAHGYVKVDPRWIKLPTSLGALFGHETDHNHKTQQAAGGGAA 324
            P+DRC V+C+L+ +TFL GE V G IK      ++D V ++  TV+AHGYVKVDPRWI LPTSL  LF        + ++ +GGGA+
Sbjct:   23 PQDRCRVTCALQRNTFLPGEHVRGTIKFGVSSEDQDGVDIEEATVQAHGYVKVDPRWIALPTSLRRLF--------RQEEGSGGGAS 101
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BLAST of mRNA_D-mesarthrocarpus_Contig10720.1.1 vs. uniprot
Match: D8LDZ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDZ5_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 9.150e-15
Identity = 40/71 (56.34%), Postives = 50/71 (70.42%), Query Frame = 1 
Query:   64 PRDRCLVSCSLRGSTFLAGEEVSGVIKLTHQDGEEDHVMVDTVTVEAHGYVKVDPRWIKLPTSLGALFGHE 276
            P+DRC V+C+L+ +TFL GE V G IK      ++D V ++  TV+AHGYVKVDPRWI LPTSL  LF  E
Sbjct:   23 PQDRCRVTCALQRNTFLPGEHVRGTIKFGVSSEDQDGVDIEEATVQAHGYVKVDPRWIALPTSLRRLFRQE 93
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10720.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KF53_9PHAE5.100e-1649.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LDZ5_ECTSI9.150e-1556.34Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10720contigD-mesarthrocarpus_Contig10720:478..2348 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LDZ5
Preferred nameRGP1
PFAMsRgp1
Model size1117
Max annot lvl2759|Eukaryota
KEGG koko:K20477
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0003674,GO:0005085,GO:0005088,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005802,GO:0005829,GO:0005886,GO:0006810,GO:0008150,GO:0009892,GO:0009894,GO:0009895,GO:0009966,GO:0009967,GO:0010605,GO:0010646,GO:0010647,GO:0012505,GO:0016020,GO:0016192,GO:0016197,GO:0016482,GO:0017016,GO:0017112,GO:0017137,GO:0019222,GO:0019899,GO:0023051,GO:0023056,GO:0031090,GO:0031267,GO:0031323,GO:0031324,GO:0031329,GO:0031330,GO:0031984,GO:0032006,GO:0032008,GO:0032045,GO:0032268,GO:0032269,GO:0032588,GO:0032991,GO:0034066,GO:0042147,GO:0042176,GO:0042177,GO:0043085,GO:0043087,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043547,GO:0044093,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050789,GO:0050790,GO:0050794,GO:0051020,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051246,GO:0051248,GO:0051336,GO:0051345,GO:0051641,GO:0051649,GO:0060255,GO:0065007,GO:0065009,GO:0071944,GO:0080090,GO:0098588,GO:0098772,GO:0098791,GO:1902531,GO:1902533,GO:1903362,GO:1903363,GO:1903939,GO:1904515
Exons2
Evalue1.94e-18
EggNOG OGsKOG4469@1|root,KOG4469@2759|Eukaryota
DescriptionRab guanyl-nucleotide exchange factor activity
Cds size291
COG categoryJ
BRITEko00000,ko04131
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789206.1111503-UTR-D-mesarthrocarpus_Contig10720:477..12461680789206.1111503-UTR-D-mesarthrocarpus_Contig10720:477..1246Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig10720 478..1246 -
1680789206.1500745-UTR-D-mesarthrocarpus_Contig10720:2291..23481680789206.1500745-UTR-D-mesarthrocarpus_Contig10720:2291..2348Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig10720 2292..2348 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789206.1261368-CDS-D-mesarthrocarpus_Contig10720:1246..14051680789206.1261368-CDS-D-mesarthrocarpus_Contig10720:1246..1405Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10720 1247..1405 -
1680789206.1398804-CDS-D-mesarthrocarpus_Contig10720:2159..22911680789206.1398804-CDS-D-mesarthrocarpus_Contig10720:2159..2291Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10720 2160..2291 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10720.1.1prot_D-mesarthrocarpus_Contig10720.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10720 1247..2291 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10720.1.1

>prot_D-mesarthrocarpus_Contig10720.1.1 ID=prot_D-mesarthrocarpus_Contig10720.1.1|Name=mRNA_D-mesarthrocarpus_Contig10720.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=97bp
MRPRDRCLVSCSLRGSTFLAGEEVSGVIKLTHQDGEEDHVMVDTVTVEAH
GYVKVDPRWIKLPTSLGALFGHETDHNHKTQQAAGGGAAPVSAATR*
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mRNA from alignment at D-mesarthrocarpus_Contig10720:478..2348-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10720.1.1 ID=mRNA_D-mesarthrocarpus_Contig10720.1.1|Name=mRNA_D-mesarthrocarpus_Contig10720.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1871bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10720:478..2348- (Discosporangium mesarthrocarpum MT17_79)
GGTCTTGAGCGACGAGAAGATGTGCCTCTGAGTACCCTGATCCATTAGTG
TTTAAGTATGAGACCACGCGATAGATGCCTCGTGAGTTGCAGTCTTCGAG
GGAGCACCTTCTTGGCTGGGGAGGAGGTCAGTGGGGTAATAAAGCTGACA
CATCAAGACGGCGAAGAAGATCACGTGATGGTCGACACGGTGAGCCATCC
CTCAGACTCGCCCAAATGCAAGCCCCCCCCTCGTGGAAGCAATGAAAATT
GATGGGTAAAATAATTAAAGTTTGTTTGAGGGTACTGTTTGCGGTCTGTA
CGGTGAAAGGGGCGCTGAGGATCGATTGCGGGAGGGGTTGACGTTCCGGC
CATCCCTGTACATAGTCGATTGCGGGTTTTCCAGTTAGTTCAGAAGCCGA
ATTTTTGGAGGAGAGCTCTCTATGAGCATCCACTGTGCTTGTGTGCTTTG
AGGTAACGATTTGTCTATTTGCCTCCGTTGCTGGCATCACGAGATGACAT
ATGTATCTTCCTGTCTTTTTGCTCAAACGCAAGGAGTCGAGACACAATCC
CACCGATAGCCAGAGGTGCAAGGGCACCTTCACATTGCACGTTACAGAAT
ATCCCACCTCCGTTCCTTCTGACTTGCCCAAGTTGTTCAGCTGTTTTCCC
CACAACCCCCATAGGGAACAACGTTGTTCAGCTGTGTAGCTCAGTCACGT
GAATGCTTCCTGCTCCCCCTGTTTCATTCTTGCACCTTGTTGTCCCGTTG
TCCCGCGAGAGAAAAACACCTCTCTCACAACCGTACAATTACTCCCTCTT
TGCCCCAAGAACGTGATCCACGTCCCCACCCGCACCCAAGCCACGCTGAG
AAGGCGCCCTTCACCCCACTCACGCCATCGCCTCCCAATACCCACGTGAC
CCGACACCCGAAGCCATACGTAACACGTGCCCTGCCCGTGTAGGTGACCG
TTGAGGCGCACGGCTACGTCAAGGTTGATCCCCGCTGGATCAAATTGCCA
ACATCTTTGGGCGCCCTTTTCGGCCACGAGACCGATCACAATCACAAGAC
CCAACAAGCGGCTGGCGGCGGCGCTGCCCCAGTCTCTGCAGCCACCAGGT
AACCTTTCACCTCCAGGCACTCTGCCATGCTGCATCGAGGTTGGGGTTAG
TTCTGCTCCAGCCACGGACACCAGCGTCACTATTACCTGAAGGGTAACAT
TATTGGGCTGCGTTTTTGAAGGGGAACGCTGTGGACGTTTTTGACTATGG
AGTGCATTGTTGCATGCCTTCCTCTTTGCTGACTACCTCCGTGTTGTACC
TCAGCAAGAGCGTTGGCGTTTCACACACACACCCTCCTCCGGCCGATGGG
ACTGTAACCATTATGGTACGAAAGATCTCAATAGCACGTTTGTTGGTTGC
TTTTGCTGTCGGAAGAGGGTTCCGGCGATGATTACTACATGGAATTCGGC
CCAGGGATATGCATTGGTGCGCGGGGATGTGGGAGGTAACCGTGCTGATA
TGTGGTACTTACTGCCTTGCTGCAGAGCGTTACCTATTTCTTCCAGAAGC
TTATCTCAGCAGGTCTGTGTGTTTTGAGGCTCCCCGGCAGAGTCCACACT
CTAGGTAGTACAGTACAGCACAGCATCACAGAGTAGAGACTCTATTGGTT
GGAGGTCCCGGAACATGGAGCCTGTTATGAGGTGCTCGTACTCCTTGTTT
CTGGTGGGGAAACTCTCCTCTCCAAGAAAGGAGACTGCGACCCCCCTGCT
TTGTGTTTACATTATCCTGTATTACACGGCGATGTGCCGGGGAATGGTGT
CCTCTTCTGGGGAATGATGCCCTCTTCTGGGGAATAATGTCCTCTCCAGG
GAAATGATGCCCTCTTCTGGG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10720:478..2348-

>mRNA_D-mesarthrocarpus_Contig10720.1.1 ID=mRNA_D-mesarthrocarpus_Contig10720.1.1|Name=mRNA_D-mesarthrocarpus_Contig10720.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=291bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10720:478..2348- (Discosporangium mesarthrocarpum MT17_79)
ATGAGACCACGCGATAGATGCCTCGTGAGTTGCAGTCTTCGAGGGAGCAC
CTTCTTGGCTGGGGAGGAGGTCAGTGGGGTAATAAAGCTGACACATCAAG
ACGGCGAAGAAGATCACGTGATGGTCGACACGGTGACCGTTGAGGCGCAC
GGCTACGTCAAGGTTGATCCCCGCTGGATCAAATTGCCAACATCTTTGGG
CGCCCTTTTCGGCCACGAGACCGATCACAATCACAAGACCCAACAAGCGG
CTGGCGGCGGCGCTGCCCCAGTCTCTGCAGCCACCAGGTAA
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