mRNA_D-mesarthrocarpus_Contig10716.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10716.2.1
Unique NamemRNA_D-mesarthrocarpus_Contig10716.2.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10716.2.1 vs. uniprot
Match: A0A6H5K7H2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7H2_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 1.600e-6
Identity = 27/45 (60.00%), Postives = 34/45 (75.56%), Query Frame = 1 
Query:    1 DVARVGKKIRRFAEKHGLGSVLAATERLHGHLHEVVTRGVQEGHF 135
            ++ARV KK RR AE+HGL S+  A+ +L  HLH VV+RGVQEG F
Sbjct:  465 EIARVAKKFRRLAERHGLESMTKASNQLRAHLHAVVSRGVQEGLF 509
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10716.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K7H2_9PHAE1.600e-660.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10716contigD-mesarthrocarpus_Contig10716:1931..4114 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size501
Hectar predicted targeting categoryother localisation
Exons2
Cds size498
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789205.7093008-CDS-D-mesarthrocarpus_Contig10716:1930..20571680789205.7093008-CDS-D-mesarthrocarpus_Contig10716:1930..2057Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10716 1931..2057 +
1680789205.7257771-CDS-D-mesarthrocarpus_Contig10716:3741..41121680789205.7257771-CDS-D-mesarthrocarpus_Contig10716:3741..4112Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10716 3742..4112 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10716.2.1prot_D-mesarthrocarpus_Contig10716.2.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10716 1931..4112 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10716.2.1

>prot_D-mesarthrocarpus_Contig10716.2.1 ID=prot_D-mesarthrocarpus_Contig10716.2.1|Name=mRNA_D-mesarthrocarpus_Contig10716.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=166bp
DVARVGKKIRRFAEKHGLGSVLAATERLHGHLHEVVTRGVQEGHFESHST
RPWLPTSLTGNYQHHSCGGGGSASHNHGHHPHQHHHHHQHQHHQRPPSAL
GTLKSSASSKKSELASRFPYPCPQLGTSSCHRHHQRSTKAQGRGGSWLGA
GGGGVGLWTSAGRARA
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mRNA from alignment at D-mesarthrocarpus_Contig10716:1931..4114+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10716.2.1 ID=mRNA_D-mesarthrocarpus_Contig10716.2.1|Name=mRNA_D-mesarthrocarpus_Contig10716.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=2184bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10716:1931..4114+ (Discosporangium mesarthrocarpum MT17_79)
GACGTGGCCCGGGTGGGCAAGAAGATCCGGCGCTTTGCCGAGAAGCATGG
TCTGGGATCGGTCCTCGCGGCCACAGAGCGGTTGCATGGGCACCTGCATG
AGGTGGTCACCCGAGGGGTGCAGGAAGGTAAGAGAGAGAGGTAGGAGGGA
GTGGGGAGGGGGAGGGAGAGGAAGAGAGAGGAGGAAAGAGGGAAACAAAG
GGAGAGATATGGGGGAGGGGGTGGCAGAGGTATGAGGGAGAGGGAGAGAG
AGGGAGAGAGGGGGGGGAAGCAGGGAGAGAGGAGAGAAAAGGAGAGAGAG
TGGGGGGGGTAGAGAAGGGGGGGGAGAGGGAGAGAGAGAGGGAGACGGAA
GAGTTGGAGAGGGAGAGATGTCTCTGAGCAATAATGCTCCCTGTGATGGT
AACACCCCTTTGTGCCCCTGTGCATCTACACTATGGTCATTGAGTGGAGT
CGTGTTTGATCTCCTCGGTCCCTGACTCCAACCCTAACCCCAACCATAAC
CCTAGCCCTGAACCCAAACCTAACCCGAACCCCAACCCTGACCCTAGCTG
CCACCTTAGTGATTGTGCTCTACCCCTGATGCTGCCCAGTGTAAGCAATG
CATCCCTAACACCAACCCTGAGCCCAGCCCAAACCCTAACCCTGAACCTA
TACCTAAACCTAGCCCTAATCCTAACCTTAACTGGCAGCTTTGTCCTATG
CTGTACCCCTGGTGCTGGCGAAGCCTGAGCAATGTAACCCCATCCCTCAC
CACAGCCCTAACCCTTTCCTCAACCCAAACCCTAATTGCCACCTTATTGC
TGCATTGCACCTCTGGTGCTGATCAAGTGTGAGTAATGTAACCCCAACCC
CAACCCCAACCCTAACCCCAACCTTAACCCTAACCCTAACCCTAGCTGCC
ACCTAACTGTTGCTCTGTACCCCTAGTACCGTGGCTGAGACCCACTCGCC
CCTCTCTATGACCTTGCCTGGAGGGAGTGGAGTGCCTGCGAGCTGTAAGT
CTTACGGTGCTGTAGAGCTATGTTTTGCCACTCTGTTTTGCCACTATGTT
TTGTCGCCGTGATGTGTTTCCACCCACACTGTTGTGCCTTAAAGTACTCA
TGCTAGTGTAACATCTTTTTTGGTAGTGTTTTGCCTTTTGTACTGGTGTT
AAGCCTGTTTTGCTTATGTTGTGCCTTTTTTTATTGCTTGTCCCACTTGC
GCTGTGCTTGTTTCATCCCCCCCCCCCACCTCCCTCTTTTCCCACCTTGG
TCTTCCCCCCGCTCTTCTTTCTCTTTCTCTTTTCTTCTTCCTCTCCGCTC
CCTCTTCCTGTTTCTATTTTCCACATGTACAACCAAACTAAAACACCAAC
AATCAAAAGATTGAAGAACAAGGCTACAAACCAAACCAAACCAAACCAAA
CCAAACCAAACCAAACCAAAACAAACCAAAACAAACCAAAACAAACCAAA
CCAAACCAAACCAAAACAAACCAAACCAAAACAAACCAAAACAAAACAAA
CCAAAACAAACCAAAACAAACCAAAATAAAACAAAACAAAACAAAACAAA
ACAAACCAAACCAATACAAAACAAAACAAAACAAAGCAAAACAAAACAAA
ACAAAATAAAACAAAACAAAACAAACCAAAACAAACCAAAACAAACCAAA
ACAAAACAAACCAAACCAATACAAAACAAAACAAAACAAAGCAAAACAAA
ACAAAACAAAACAAAACAAAACAAAACAAAACAAACCAAACCAAACCAAA
CCAAAACAAAACAAAACAAAACAAAACAAAACAAAACAAAATAAAACAAA
ACAAAATGCAGGCCACTTCGAGTCCCACAGCACACGCCCGTGGCTCCCCA
CATCGCTGACTGGCAACTACCAACACCACAGTTGTGGGGGGGGGGGGAGC
GCTTCCCACAACCACGGCCACCACCCACACCAGCACCATCACCATCACCA
GCACCAGCACCACCAACGCCCACCCTCTGCCCTGGGGACCCTCAAGTCCA
GCGCCAGCAGCAAGAAGAGTGAACTAGCCTCCCGCTTCCCCTACCCTTGC
CCCCAGCTGGGCACCTCCTCCTGCCATAGGCATCACCAGCGCTCTACCAA
GGCACAAGGGCGGGGTGGGAGCTGGCTGGGGGCAGGTGGAGGAGGGGTGG
GGCTCTGGACCTCTGCGGGCAGGGCAAGAGCCGA
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10716:1931..4114+

>mRNA_D-mesarthrocarpus_Contig10716.2.1 ID=mRNA_D-mesarthrocarpus_Contig10716.2.1|Name=mRNA_D-mesarthrocarpus_Contig10716.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=498bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10716:1931..4114+ (Discosporangium mesarthrocarpum MT17_79)
GACGTGGCCCGGGTGGGCAAGAAGATCCGGCGCTTTGCCGAGAAGCATGG
TCTGGGATCGGTCCTCGCGGCCACAGAGCGGTTGCATGGGCACCTGCATG
AGGTGGTCACCCGAGGGGTGCAGGAAGGCCACTTCGAGTCCCACAGCACA
CGCCCGTGGCTCCCCACATCGCTGACTGGCAACTACCAACACCACAGTTG
TGGGGGGGGGGGGAGCGCTTCCCACAACCACGGCCACCACCCACACCAGC
ACCATCACCATCACCAGCACCAGCACCACCAACGCCCACCCTCTGCCCTG
GGGACCCTCAAGTCCAGCGCCAGCAGCAAGAAGAGTGAACTAGCCTCCCG
CTTCCCCTACCCTTGCCCCCAGCTGGGCACCTCCTCCTGCCATAGGCATC
ACCAGCGCTCTACCAAGGCACAAGGGCGGGGTGGGAGCTGGCTGGGGGCA
GGTGGAGGAGGGGTGGGGCTCTGGACCTCTGCGGGCAGGGCAAGAGCC
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