mRNA_D-mesarthrocarpus_Contig10712.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10712.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10712.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10712.1.1 vs. uniprot
Match: D7FN48_ECTSI (ATP-citrate synthase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FN48_ECTSI)

HSP 1 Score: 213 bits (543), Expect = 3.750e-62
Identity = 98/108 (90.74%), Postives = 105/108 (97.22%), Query Frame = 1 
Query:    4 NQLYRPGTVAYVSKSGGMSNELNNIIARNTDGVYEGVAIGGDRYPGTRFIDHLLRYQDNPAIKMLVLLGEVGGVDEYDVCDALKNGRITKPLVAWCIGTCASIFPFEV 327
            ++LYRPGTVAYVSKSGGMSNELNNIIARN+DGV+EGVAIGGDRYPGTRFIDHLLRYQDNP + MLVLLGEVGG DEYDVCDALK+GRITKP+VAWCIGTCASIFPFEV
Sbjct:  650 SKLYRPGTVAYVSKSGGMSNELNNIIARNSDGVFEGVAIGGDRYPGTRFIDHLLRYQDNPTVSMLVLLGEVGGADEYDVCDALKSGRITKPVVAWCIGTCASIFPFEV 757
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BLAST of mRNA_D-mesarthrocarpus_Contig10712.1.1 vs. uniprot
Match: A0A7S1V7K5_9STRA (ATP-citrate synthase n=2 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1V7K5_9STRA)

HSP 1 Score: 209 bits (533), Expect = 9.020e-61
Identity = 95/108 (87.96%), Postives = 105/108 (97.22%), Query Frame = 1 
Query:    4 NQLYRPGTVAYVSKSGGMSNELNNIIARNTDGVYEGVAIGGDRYPGTRFIDHLLRYQDNPAIKMLVLLGEVGGVDEYDVCDALKNGRITKPLVAWCIGTCASIFPFEV 327
            ++LYRPG+VAYVSKSGGMSNELNNII RN+DGVYEGVAIGGDRYPG+RFIDHLLRY DNPAI MLVLLGEVGGVDEY++CDA+K+GRITKPL+AWCIGTCASIFPFEV
Sbjct:  663 SKLYRPGSVAYVSKSGGMSNELNNIICRNSDGVYEGVAIGGDRYPGSRFIDHLLRYNDNPAIHMLVLLGEVGGVDEYEICDAIKSGRITKPLIAWCIGTCASIFPFEV 770
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BLAST of mRNA_D-mesarthrocarpus_Contig10712.1.1 vs. uniprot
Match: A0A7S2CSV4_9STRA (ATP citrate synthase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CSV4_9STRA)

HSP 1 Score: 202 bits (515), Expect = 4.980e-60
Identity = 94/108 (87.04%), Postives = 102/108 (94.44%), Query Frame = 1 
Query:    4 NQLYRPGTVAYVSKSGGMSNELNNIIARNTDGVYEGVAIGGDRYPGTRFIDHLLRYQDNPAIKMLVLLGEVGGVDEYDVCDALKNGRITKPLVAWCIGTCASIFPFEV 327
            ++LYRPG+VAYVSKSGGMSNELNNIIA N+DGV EGVAIGGDRYPG+RFIDHLLRYQ NPA+KMLVLLGEVGGVDEYDVCDALK+GRITKPLVAWCIGTCA  F +EV
Sbjct:  170 SKLYRPGSVAYVSKSGGMSNELNNIIAHNSDGVCEGVAIGGDRYPGSRFIDHLLRYQQNPAVKMLVLLGEVGGVDEYDVCDALKDGRITKPLVAWCIGTCAGCFSYEV 277
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BLAST of mRNA_D-mesarthrocarpus_Contig10712.1.1 vs. uniprot
Match: A0A6U1PJ67_9STRA (ATP citrate synthase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1PJ67_9STRA)

HSP 1 Score: 198 bits (504), Expect = 7.190e-60
Identity = 89/108 (82.41%), Postives = 102/108 (94.44%), Query Frame = 1 
Query:    4 NQLYRPGTVAYVSKSGGMSNELNNIIARNTDGVYEGVAIGGDRYPGTRFIDHLLRYQDNPAIKMLVLLGEVGGVDEYDVCDALKNGRITKPLVAWCIGTCASIFPFEV 327
            ++LYRPG+VAYVSKSGGMSNELNNII +N+DGVYEGVAIGGDRYPG+RF+D LLRY D+P +KM+VLLGEVGG DEYD+C A+K+GRITKPLVAWCIGTCASIFPFEV
Sbjct:    2 SKLYRPGSVAYVSKSGGMSNELNNIICKNSDGVYEGVAIGGDRYPGSRFMDFLLRYNDDPKVKMMVLLGEVGGADEYDICAAIKDGRITKPLVAWCIGTCASIFPFEV 109
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BLAST of mRNA_D-mesarthrocarpus_Contig10712.1.1 vs. uniprot
Match: A0A7S3MIM8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MIM8_9STRA)

HSP 1 Score: 196 bits (498), Expect = 3.000e-59
Identity = 88/108 (81.48%), Postives = 102/108 (94.44%), Query Frame = 1 
Query:    4 NQLYRPGTVAYVSKSGGMSNELNNIIARNTDGVYEGVAIGGDRYPGTRFIDHLLRYQDNPAIKMLVLLGEVGGVDEYDVCDALKNGRITKPLVAWCIGTCASIFPFEV 327
            ++LYRPG+VAYVSKSGGMSNELNNIIARN+DGVYEGVAIGGDRYPG+ F+DH+LRY DNP IKM+VLLGEVGG+DEY VC+A+K+GRITKPLV W +GTCASIFP+EV
Sbjct:  239 SKLYRPGSVAYVSKSGGMSNELNNIIARNSDGVYEGVAIGGDRYPGSLFLDHMLRYNDNPEIKMMVLLGEVGGIDEYAVCEAIKSGRITKPLVGWVMGTCASIFPYEV 346
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BLAST of mRNA_D-mesarthrocarpus_Contig10712.1.1 vs. uniprot
Match: A0A7S2R5L9_9STRA (ATP citrate synthase (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R5L9_9STRA)

HSP 1 Score: 201 bits (512), Expect = 9.910e-59
Identity = 89/108 (82.41%), Postives = 105/108 (97.22%), Query Frame = 1 
Query:    4 NQLYRPGTVAYVSKSGGMSNELNNIIARNTDGVYEGVAIGGDRYPGTRFIDHLLRYQDNPAIKMLVLLGEVGGVDEYDVCDALKNGRITKPLVAWCIGTCASIFPFEV 327
            ++LYRPG+VAYVSKSGGMSNELNNII +N++GVYEGVAIGGDRYPG+RFIDHLLRY DNPA+ +LVLLGEVGG+DEY++C+A+KNGRI+KP+VAWCIGTCASIFPFEV
Sbjct:  398 SKLYRPGSVAYVSKSGGMSNELNNIICQNSNGVYEGVAIGGDRYPGSRFIDHLLRYNDNPAVHILVLLGEVGGMDEYEICEAIKNGRISKPIVAWCIGTCASIFPFEV 505
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BLAST of mRNA_D-mesarthrocarpus_Contig10712.1.1 vs. uniprot
Match: A0A7S2UBX9_9STRA (ATP citrate synthase n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UBX9_9STRA)

HSP 1 Score: 198 bits (504), Expect = 2.480e-58
Identity = 89/108 (82.41%), Postives = 102/108 (94.44%), Query Frame = 1 
Query:    4 NQLYRPGTVAYVSKSGGMSNELNNIIARNTDGVYEGVAIGGDRYPGTRFIDHLLRYQDNPAIKMLVLLGEVGGVDEYDVCDALKNGRITKPLVAWCIGTCASIFPFEV 327
            ++LYRPG+VAYVSKSGGMSNELNNII R++DGVYEGVAIGGDRYPG++FIDHLLRY DNPA+ +LVLLGEVGG DEY++C A+K+GRI KPLVAWCIGTCASIFPFEV
Sbjct:  182 SKLYRPGSVAYVSKSGGMSNELNNIICRSSDGVYEGVAIGGDRYPGSQFIDHLLRYNDNPAVHILVLLGEVGGTDEYEICHAIKSGRINKPLVAWCIGTCASIFPFEV 289
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BLAST of mRNA_D-mesarthrocarpus_Contig10712.1.1 vs. uniprot
Match: A0A835Z7S0_9STRA (ATP-citrate synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7S0_9STRA)

HSP 1 Score: 202 bits (513), Expect = 4.680e-58
Identity = 93/108 (86.11%), Postives = 104/108 (96.30%), Query Frame = 1 
Query:    4 NQLYRPGTVAYVSKSGGMSNELNNIIARNTDGVYEGVAIGGDRYPGTRFIDHLLRYQDNPAIKMLVLLGEVGGVDEYDVCDALKNGRITKPLVAWCIGTCASIFPFEV 327
            ++LYRPG+VAYVSKSGGMSNELNNIIAR +DGVYEGVAIGGDRYPGTRFIDHLLRY D+P +KM+VLLGEVGGVDEY+VC AL++GRI+KPLVAWCIGTCASIFPFEV
Sbjct:  652 SKLYRPGSVAYVSKSGGMSNELNNIIARASDGVYEGVAIGGDRYPGTRFIDHLLRYNDDPNVKMMVLLGEVGGVDEYEVCAALESGRISKPLVAWCIGTCASIFPFEV 759
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BLAST of mRNA_D-mesarthrocarpus_Contig10712.1.1 vs. uniprot
Match: A0A7C0X8B2_9ARCH (ATP citrate synthase (Fragment) n=1 Tax=Thermoplasmatales archaeon TaxID=2268204 RepID=A0A7C0X8B2_9ARCH)

HSP 1 Score: 194 bits (492), Expect = 1.530e-57
Identity = 87/107 (81.31%), Postives = 100/107 (93.46%), Query Frame = 1 
Query:    7 QLYRPGTVAYVSKSGGMSNELNNIIARNTDGVYEGVAIGGDRYPGTRFIDHLLRYQDNPAIKMLVLLGEVGGVDEYDVCDALKNGRITKPLVAWCIGTCASIFPFEV 327
            +L+RPG+VAYVSKSGG+SNELNNIIARNTDGVYEG+AIGGDRYPG+ FIDHLLRY+ NP +KM+V+LGEVGG DEYDV +ALK+GRITKPLVAWCIGTCA +FP EV
Sbjct:  176 KLHRPGSVAYVSKSGGLSNELNNIIARNTDGVYEGIAIGGDRYPGSTFIDHLLRYEKNPDVKMMVMLGEVGGTDEYDVVEALKDGRITKPLVAWCIGTCAKVFPAEV 282
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BLAST of mRNA_D-mesarthrocarpus_Contig10712.1.1 vs. uniprot
Match: A0A7S2FAQ9_9STRA (ATP citrate synthase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FAQ9_9STRA)

HSP 1 Score: 193 bits (491), Expect = 2.580e-57
Identity = 88/108 (81.48%), Postives = 99/108 (91.67%), Query Frame = 1 
Query:    4 NQLYRPGTVAYVSKSGGMSNELNNIIARNTDGVYEGVAIGGDRYPGTRFIDHLLRYQDNPAIKMLVLLGEVGGVDEYDVCDALKNGRITKPLVAWCIGTCASIFPFEV 327
            ++LYRPG+VAYVSKSGGMSNELNNII  N+DGV EGVAIGGDRYPG+RFIDHLLRYQ NP +K+LVLLGEVGGVDEYDVCDA+ +GR+TKPLVAWCIGTCA  F +EV
Sbjct:   67 SKLYRPGSVAYVSKSGGMSNELNNIICHNSDGVCEGVAIGGDRYPGSRFIDHLLRYQSNPDVKVLVLLGEVGGVDEYDVCDAMADGRLTKPLVAWCIGTCAGCFSYEV 174
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10712.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FN48_ECTSI3.750e-6290.74ATP-citrate synthase n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A7S1V7K5_9STRA9.020e-6187.96ATP-citrate synthase n=2 Tax=Grammatophora oceanic... [more]
A0A7S2CSV4_9STRA4.980e-6087.04ATP citrate synthase n=1 Tax=Dictyocha speculum Ta... [more]
A0A6U1PJ67_9STRA7.190e-6082.41ATP citrate synthase n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3MIM8_9STRA3.000e-5981.48Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S2R5L9_9STRA9.910e-5982.41ATP citrate synthase (Fragment) n=1 Tax=Eucampia a... [more]
A0A7S2UBX9_9STRA2.480e-5882.41ATP citrate synthase n=1 Tax=Attheya septentrional... [more]
A0A835Z7S0_9STRA4.680e-5886.11ATP-citrate synthase n=1 Tax=Tribonema minus TaxID... [more]
A0A7C0X8B2_9ARCH1.530e-5781.31ATP citrate synthase (Fragment) n=1 Tax=Thermoplas... [more]
A0A7S2FAQ9_9STRA2.580e-5781.48ATP citrate synthase n=1 Tax=Florenciella parvula ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10712contigD-mesarthrocarpus_Contig10712:115..1235 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FN48
Preferred nameACLA-3
PFAMsATP-grasp_2,Citrate_bind,Citrate_synt,CoA_binding,Ligase_CoA
Model size327
Max annot lvl2759|Eukaryota
KEGG rclassRC00004,RC00067
KEGG koko:K01648
KEGG ReactionR00352
KEGG Pathwayko00020,ko00720,ko01100,ko01110,ko01120,ko01130,map00020,map00720,map01100,map01110,map01120,map01130
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0003878,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006082,GO:0006084,GO:0006085,GO:0006091,GO:0006101,GO:0006139,GO:0006163,GO:0006164,GO:0006629,GO:0006631,GO:0006633,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009346,GO:0009987,GO:0016020,GO:0016053,GO:0016740,GO:0016746,GO:0016999,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019752,GO:0032787,GO:0032991,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0035383,GO:0035384,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046390,GO:0046394,GO:0046483,GO:0046912,GO:0051186,GO:0051188,GO:0055086,GO:0071616,GO:0071704,GO:0071944,GO:0072330,GO:0072350,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
Exons2
Evalue6.15e-63
EggNOG OGsCOG0045@1|root,KOG1254@2759|Eukaryota
EC2.3.3.8
DescriptionATP citrate synthase activity
Cds size327
COG categoryC
BRITEko00000,ko00001,ko01000,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789205.5461361-CDS-D-mesarthrocarpus_Contig10712:114..2491680789205.5461361-CDS-D-mesarthrocarpus_Contig10712:114..249Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10712 115..249 -
1680789205.5581799-CDS-D-mesarthrocarpus_Contig10712:1043..12351680789205.5581799-CDS-D-mesarthrocarpus_Contig10712:1043..1235Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10712 1044..1235 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10712.1.1prot_D-mesarthrocarpus_Contig10712.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10712 115..1235 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10712.1.1

>prot_D-mesarthrocarpus_Contig10712.1.1 ID=prot_D-mesarthrocarpus_Contig10712.1.1|Name=mRNA_D-mesarthrocarpus_Contig10712.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=109bp
QNQLYRPGTVAYVSKSGGMSNELNNIIARNTDGVYEGVAIGGDRYPGTRF
IDHLLRYQDNPAIKMLVLLGEVGGVDEYDVCDALKNGRITKPLVAWCIGT
CASIFPFEV
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mRNA from alignment at D-mesarthrocarpus_Contig10712:115..1235-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10712.1.1 ID=mRNA_D-mesarthrocarpus_Contig10712.1.1|Name=mRNA_D-mesarthrocarpus_Contig10712.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1121bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10712:115..1235- (Discosporangium mesarthrocarpum MT17_79)
CAAAACCAGCTCTACCGCCCGGGCACAGTGGCCTATGTGTCCAAGAGCGG
GGGCATGTCCAATGAGCTGAACAACATCATTGCCCGGAACACTGATGGGG
TGTATGAGGGAGTGGCCATTGGTGGCGACCGCTACCCGGGCACAAGGTTC
ATCGACCACCTCCTCCGCTACCAGGACAACCCCGCCATCAAGGTCGGCGT
TTTGGGCTAGGGACAGGGTTATGGATGCTTTTTTCCCCCTGCGAGTTTGT
TTTTGCTGGACCTTGTGAAGCTGTGCTTCACTGGAGAAGGCATGGGTAAG
GTAGGGTTGAAGTTAGAGTCGGGTTCTGGATCAGCTGTCTGTTTGCGGGT
TTGCTTTACCATTACCAAGAAATCGTGCCCTGCTTGCACTGTACTGTAGG
GGACAAAATGACTTGGTGTAGGGTCAGGGTTTAGGAAAGGCTTGGATCTG
TACGGATAAAAAAAATATTGATATTGCTGTAGAGTAATGGCGCTGCATTG
CACTGGAGCGGGCAAAAGGGTAAGAAAGGGAGAGGGTTGGGGACAGGCTT
TGACCTTCTTGAATTAATGCTGTCTATTGGAAACGCTGGGGTTAGGTCAG
GGGGACAGGGAGGGAGAGAAAAGAAATAGAGCATGGTTCAAAGCTGTAGG
AAATGTCTTTGTTCTGTGTCAGCACCGTTCTCACTTGGTGCTTATTTGAA
GATGTACTGGTGGTCGTTCAGGGCAGGTGAGAGGGAATGAAACGTAAGGA
AAAGGGGGGTAAAGGCAGACAATTTCTTGTCACTGTGAGGTTAAACAACA
CTTAATGCCTTGATGTTCACCAAGGATTAGGGCTAGGTTAAGGGTTAGGG
TCTGTCATCAAAGTCATGTTGTGGCCGTGCTTAGGTTCACCCCTAACACC
ACAAGCCTGACATTGTGATTGTGGCGTTACCCTTCCCCCCCTCCTGTGCC
CTGCCCTGCCCTGCCCTGTGTGTACTCTCCTCGCAGATGCTGGTCCTGCT
GGGAGAGGTGGGAGGAGTTGATGAGTATGATGTCTGTGATGCCCTCAAGA
ATGGCCGCATCACCAAGCCTCTCGTGGCCTGGTGCATTGGCACCTGCGCT
TCCATCTTCCCCTTCGAGGTC
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10712:115..1235-

>mRNA_D-mesarthrocarpus_Contig10712.1.1 ID=mRNA_D-mesarthrocarpus_Contig10712.1.1|Name=mRNA_D-mesarthrocarpus_Contig10712.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=327bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10712:115..1235- (Discosporangium mesarthrocarpum MT17_79)
CAAAACCAGCTCTACCGCCCGGGCACAGTGGCCTATGTGTCCAAGAGCGG
GGGCATGTCCAATGAGCTGAACAACATCATTGCCCGGAACACTGATGGGG
TGTATGAGGGAGTGGCCATTGGTGGCGACCGCTACCCGGGCACAAGGTTC
ATCGACCACCTCCTCCGCTACCAGGACAACCCCGCCATCAAGATGCTGGT
CCTGCTGGGAGAGGTGGGAGGAGTTGATGAGTATGATGTCTGTGATGCCC
TCAAGAATGGCCGCATCACCAAGCCTCTCGTGGCCTGGTGCATTGGCACC
TGCGCTTCCATCTTCCCCTTCGAGGTC
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