mRNA_D-mesarthrocarpus_Contig10706.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10706.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10706.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10706.1.1 vs. uniprot
Match: A0A6H5KIR6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIR6_9PHAE)

HSP 1 Score: 51.6 bits (122), Expect = 7.250e-6
Identity = 24/51 (47.06%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:   58 LGRVHAALLERMFRVYEYEQVTRLAAEVSGKLPPGLVLPEAIRQLEAFADS 210
            L  + A LLER  ++YE++Q+ R++AEVSG LPP LVLP  + ++  F +S
Sbjct: 1264 LEEIRALLLERTEQLYEFDQIQRMSAEVSGILPPRLVLPGVVSRIFRFCES 1314
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10706.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KIR6_9PHAE7.250e-647.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10706contigD-mesarthrocarpus_Contig10706:903..2529 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog3983.cassava4.1_009608m
Model size216
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons2
Evalue0.000436
EggNOG OGs2C5XH@1|root,2QPPS@2759|Eukaryota,37KQ8@33090|Viridiplantae,3GG9H@35493|Streptophyta,4JJIV@91835|fabids
Cds size213
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789204.8512645-CDS-D-mesarthrocarpus_Contig10706:904..10001680789204.8512645-CDS-D-mesarthrocarpus_Contig10706:904..1000Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10706 905..1000 -
1680789204.8641152-CDS-D-mesarthrocarpus_Contig10706:2412..25291680789204.8641152-CDS-D-mesarthrocarpus_Contig10706:2412..2529Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10706 2413..2529 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10706.1.1prot_D-mesarthrocarpus_Contig10706.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10706 905..2529 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10706.1.1

>prot_D-mesarthrocarpus_Contig10706.1.1 ID=prot_D-mesarthrocarpus_Contig10706.1.1|Name=mRNA_D-mesarthrocarpus_Contig10706.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=71bp
ENVPEENAPEEDILHDENILGRVHAALLERMFRVYEYEQVTRLAAEVSGK
LPPGLVLPEAIRQLEAFADSA
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mRNA from alignment at D-mesarthrocarpus_Contig10706:903..2529-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10706.1.1 ID=mRNA_D-mesarthrocarpus_Contig10706.1.1|Name=mRNA_D-mesarthrocarpus_Contig10706.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1627bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10706:903..2529- (Discosporangium mesarthrocarpum MT17_79)
GAGAACGTTCCAGAAGAGAACGCTCCAGAAGAGGACATTCTACATGACGA
GAACATTCTTGGAAGGGTGCACGCCGCCTTGCTTGAGCGGATGTTCCGTG
TGTATGAGTATGAGCAGGTGTGAAATGAATTTGTTATACTAGAGCAGCAG
GAAGAAGAATAGGAGAAAAAGAACACGGTGTAAGAACGGTTGATTTAGAT
ATATTCTTTTGTTGCTCTGACTTTTCTCATCCAAATTATCTTATTGTATT
GTATATTCTCTTCTTGCTCTGACTTTTCTCATCCAAATTATCTGATAATA
TTTAGCCTGTGTAAGTAGATCTGCGGATAGTCAGGAAAATGAGGATGCCC
ACACACCTGCCTACCCCCCCCCCCTAATCCCCACTCCCCATTTTAAAACC
TTAAAGAAAACGAACCTTTGTGATCAGGGTTAAGGTTAGGGTTAAGGTTA
AGGTTAGGGCAGAGGGGATCACTTCTGCGCTCACTTCTCAATCTCATGGG
CTTGGGTTAGGTTTAGGGTTTGGAACATTGGAAGGACATTAGACCTGGTA
TCAGGGCGACCCTTGTACTTCGAAAAATGGTCGTCTTTTTAAAATAAAGT
TGGTTTAGGTTAGGGTTAAGACTAGGTGACGGAAATTTGCTTCGTACTGT
TTTGCATAGGTACAATTATTGTTATTTTGTTTGTTTTAGTGGTATTTCAA
GTGGTATTTCAAGTGGTATTATTTTAGTATTTTAAGTATGGTTATGTGAT
ATGTTTTAGCTATTTTACAATTATTGTTATTTTTATTTAGTAGTGTTACA
GGTGATATTATTATTGTTTCAGTAGTATTGTAAGTAATATATTTATACTA
CAAGTAAGGTTACTTTAAATATTTTTGTATTGCAAGCGTTTTTATTATCA
TTATTAATGTTTTTAGGTTATATTTACAGTTTGTATGACTATTTAATCTC
ACAATTATTTTCAATATTGTCATATTGTCACCGTTATTATTATCGTTATT
GTTAATGTTATTTGTTTATATTTACTGTTTGTGTCACTATATAATATCAC
TATTATTTTCGCTATTGTCACGTTGTCACTGTTATTATTATTATCACTGT
TGTTATCATCACTGCCATTAACATTGCTATTAATGCCACCATACTTATCA
CTGTTTTTTTTATCACTTGAGCTCGTGAGTCGCTTGACAAGTGCTTGAGT
TATTTTGTTCTTCAAAGAGAAAAAAAAAAACAGGCCAACAACATATCCCT
AACCCCTGTGCTAGACAAGGTCTTGGTGGCACCAAGATGGGCCAATCTAC
CCTGGGGCAAGGTTGAAGGCCTTACTTTCGTTCCTTTGTGACCAAAGGAA
CGGTTAGGGTTATATTGCATAATGCCGAGTTGATGAAGGGTTATTGGTGA
TGAATTAACTAGGTCAGAACCCCAACCCCAACCCAATTCGTAACCCTGAC
CCTAACCCTAAAAATCGAACCCTGACCCTGTTTCACCCCTAACCCTAACC
CTAACCCTAACCCTAATCCTAACCCTTAGGTGACGCGGCTCGCTGCTGAG
GTGTCGGGCAAGCTCCCCCCAGGACTAGTCCTGCCTGAGGCGATCCGCCA
GCTAGAAGCCTTTGCTGACTCAGCAGA
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10706:903..2529-

>mRNA_D-mesarthrocarpus_Contig10706.1.1 ID=mRNA_D-mesarthrocarpus_Contig10706.1.1|Name=mRNA_D-mesarthrocarpus_Contig10706.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=213bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10706:903..2529- (Discosporangium mesarthrocarpum MT17_79)
GAGAACGTTCCAGAAGAGAACGCTCCAGAAGAGGACATTCTACATGACGA
GAACATTCTTGGAAGGGTGCACGCCGCCTTGCTTGAGCGGATGTTCCGTG
TGTATGAGTATGAGCAGGTGACGCGGCTCGCTGCTGAGGTGTCGGGCAAG
CTCCCCCCAGGACTAGTCCTGCCTGAGGCGATCCGCCAGCTAGAAGCCTT
TGCTGACTCAGCA
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