mRNA_D-mesarthrocarpus_Contig10702.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10702.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10702.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10702.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10702contigD-mesarthrocarpus_Contig10702:2758..3835 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size599
Hectar predicted targeting categoryother localisation
Exons3
Cds size597
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789204.7471657-CDS-D-mesarthrocarpus_Contig10702:2757..29421680789204.7471657-CDS-D-mesarthrocarpus_Contig10702:2757..2942Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10702 2758..2942 -
1680789204.7591622-CDS-D-mesarthrocarpus_Contig10702:2956..32481680789204.7591622-CDS-D-mesarthrocarpus_Contig10702:2956..3248Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10702 2957..3248 -
1680789204.7690349-CDS-D-mesarthrocarpus_Contig10702:3715..38351680789204.7690349-CDS-D-mesarthrocarpus_Contig10702:3715..3835Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10702 3716..3835 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10702.1.1prot_D-mesarthrocarpus_Contig10702.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10702 2758..3835 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10702.1.1

>prot_D-mesarthrocarpus_Contig10702.1.1 ID=prot_D-mesarthrocarpus_Contig10702.1.1|Name=mRNA_D-mesarthrocarpus_Contig10702.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=199bp
ARKALLAAYYVIDEEGHRGVGEEQLVKVLQLAGVGITKRQAVHIWEALSS
SVSFSLDQSNFCLSLSNSPGGHKGTPPHASDGVGNPMTWPCLLENPDSME
DKEKGQDTPKEEDNDRQQLETVSSKTVSGSETTHSPPTPPASAAQKPWFC
VFSLLWGSGRRPQQSGCTVNRVQHPDHPRVAPGQCSGRGRSKERGDGG*
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mRNA from alignment at D-mesarthrocarpus_Contig10702:2758..3835-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10702.1.1 ID=mRNA_D-mesarthrocarpus_Contig10702.1.1|Name=mRNA_D-mesarthrocarpus_Contig10702.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1078bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10702:2758..3835- (Discosporangium mesarthrocarpum MT17_79)
GCAAGAAAAGCGCTCCTGGCTGCGTATTATGTGATTGACGAGGAGGGTCA
CAGGGGGGTGGGGGAGGAGCAGCTGGTCAAGGTCCTCCAGTTGGCTGGAG
TGGGGATCACCAAGCGCCAGGTTAGATGAGAAGGGGGCCAGTCCATGTGG
AGAAGTCTTGAGAGTGTATCATTGCTAGGATTGTGATTAACAAGCTTAGA
TGCCAGGTTGGGGTTAGGCATCATCTACAAGCTTGAACCCTGGTGGGGTT
GACCAATGCCTGCCAGGCATTTTCAGTCCAGAAACACAATGCCGCAGGCC
ACCTCCCCCTGCACCAGACGGCAAAGAAGGCCTCACTGCACTGAGTGCAC
TCACCCATGGACACAGGGCAGGGCAGGGCAGGACAGAGGACAGCAGATGC
ACCTTCTCGAGGAAGCATACCTCCATCAACCAGCTCACCTGCCCAGACCA
CAGCCAGGGGATGGTATCAGACCATCTCTAGCACATCACACGCATATAAG
GGCAAGAACGATGTGATCTCCCTGCTCTCCAAATCAAGATCAACCTTGAA
TTAGCAAGCAACCACGTCCCCACCCCCCCCCCTTCAGGCAGTCCACATAT
GGGAGGCTCTCAGTAGCTCAGTGTCTTTCTCTCTCGACCAGTCCAACTTT
TGCTTGAGCTTGAGCAACTCACCCGGTGGGCACAAGGGTACGCCACCACA
TGCTTCGGATGGTGTGGGAAACCCAATGACCTGGCCGTGCCTCCTGGAGA
ACCCAGACAGCATGGAAGACAAGGAGAAGGGACAGGACACCCCCAAGGAG
GAAGATAACGACCGGCAGCAGCTTGAAACCGTCTCATCCAAAACTGTAAG
CGGGTCCGAGACCACCCACTCCCCTCCCAGCCCAGAGAAGCAGCCCCTCC
AGCATCAGCGGCACAGAAGCCTTGGTTCTGCGTCTTTTCCTTGTTATGGG
GCAGCGGACGGCGGCCTCAACAGAGCGGGTGCACTGTCAATCGAGTGCAG
CACCCAGATCACCCCAGGGTCGCTCCAGGGCAGTGCTCTGGGCGGGGTAG
GAGCAAGGAGCGGGGGGATGGGGGCTGA
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10702:2758..3835-

>mRNA_D-mesarthrocarpus_Contig10702.1.1 ID=mRNA_D-mesarthrocarpus_Contig10702.1.1|Name=mRNA_D-mesarthrocarpus_Contig10702.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=597bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10702:2758..3835- (Discosporangium mesarthrocarpum MT17_79)
GCAAGAAAAGCGCTCCTGGCTGCGTATTATGTGATTGACGAGGAGGGTCA
CAGGGGGGTGGGGGAGGAGCAGCTGGTCAAGGTCCTCCAGTTGGCTGGAG
TGGGGATCACCAAGCGCCAGGCAGTCCACATATGGGAGGCTCTCAGTAGC
TCAGTGTCTTTCTCTCTCGACCAGTCCAACTTTTGCTTGAGCTTGAGCAA
CTCACCCGGTGGGCACAAGGGTACGCCACCACATGCTTCGGATGGTGTGG
GAAACCCAATGACCTGGCCGTGCCTCCTGGAGAACCCAGACAGCATGGAA
GACAAGGAGAAGGGACAGGACACCCCCAAGGAGGAAGATAACGACCGGCA
GCAGCTTGAAACCGTCTCATCCAAAACTGTAAGCGGGTCCGAGACCACCC
ACTCCCCTCCCACCCCTCCAGCATCAGCGGCACAGAAGCCTTGGTTCTGC
GTCTTTTCCTTGTTATGGGGCAGCGGACGGCGGCCTCAACAGAGCGGGTG
CACTGTCAATCGAGTGCAGCACCCAGATCACCCCAGGGTCGCTCCAGGGC
AGTGCTCTGGGCGGGGTAGGAGCAAGGAGCGGGGGGATGGGGGCTGA
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