mRNA_D-mesarthrocarpus_Contig10701.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10701.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10701.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10701.1.1 vs. uniprot
Match: D8LD57_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD57_ECTSI)

HSP 1 Score: 113 bits (283), Expect = 1.620e-24
Identity = 79/167 (47.31%), Postives = 96/167 (57.49%), Query Frame = 3 
Query:  138 ELRAGLVMVSGLDHGANSSFRLPLIRSIPWVGRGRVWMLSLLRLVALGFSASMLFLAPMKGMGMGVLGVEIRDAWNSDAETTGGSRASSTPSAPFWSPERPFPRGL--EQREHVLFVGVGEEAAVEPLKAVAEEMMGRGYRASLALPAGLQQWVSDIPGLSYLPLNP 632
            E+RAGLV+V   D G +   R             R W+L +LR++AL  +ASML L P  GM   V G+   DAW             S  S P    E   P G+  +Q+EHV+FVGV EE AV PLKA+A+EM+GRGYRASLALP G Q WV DIPGLS+L L P
Sbjct:   22 EVRAGLVLVKSKDVGRSRRPR-------------RTWVLPVLRVLAL--AASMLCLTPTGGM---VTGMSKMDAW-------------SAGSGPEQQHEDRRPTGVWGQQQEHVVFVGVPEETAVLPLKALAQEMIGRGYRASLALPHGFQAWVEDIPGLSFLSLKP 157
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BLAST of mRNA_D-mesarthrocarpus_Contig10701.1.1 vs. uniprot
Match: A0A6H5K4N1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4N1_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 8.340e-23
Identity = 76/167 (45.51%), Postives = 96/167 (57.49%), Query Frame = 3 
Query:  138 ELRAGLVMVSGLDHGANSSFRLPLIRSIPWVGRGRVWMLSLLRLVALGFSASMLFLAPMKGMGMGVLGVEIRDAWNSDAETTGGSRASSTPSAPFWSPERPFPRGL--EQREHVLFVGVGEEAAVEPLKAVAEEMMGRGYRASLALPAGLQQWVSDIPGLSYLPLNP 632
            E+RAGLV+V   D G +   R             R W+L +LR++AL  +ASML L+P  GM   V G+   D W++ +E             P    E   P G    ++EHV+FVGV EE AV PLKA+A+EM+GRGYRASLALP G Q WV DIPGLS+L L P
Sbjct:   22 EVRAGLVLVKSKDVGRSRRPR-------------RTWVLPVLRVLAL--AASMLCLSPTGGM---VTGMSKMDTWSAVSE-------------PEQQHEDRRPTGAWGHRQEHVVFVGVPEENAVLPLKALAQEMIGRGYRASLALPHGFQAWVEDIPGLSFLSLKP 157
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10701.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LD57_ECTSI1.620e-2447.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K4N1_9PHAE8.340e-2345.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10701contigD-mesarthrocarpus_Contig10701:153..2568 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog157072.XP_008861383.1
PFAMsUDPGT
Model size860
Max annot lvl2759|Eukaryota
KEGG rclassRC00005,RC00033,RC00049,RC00059,RC00078,RC00171,RC00397,RC00523,RC00529,RC00708,RC02748
KEGG koko:K00699,ko:K04628
KEGG ReactionR01383,R01500,R02358,R02389,R02478,R02502,R02902,R03091,R04322,R04352,R04353,R04354,R04683,R06277,R07106,R08259,R08261,R08262,R08263,R08615,R09426,R09427,R09428,R10804
KEGG Pathwayko00040,ko00053,ko00140,ko00565,ko00600,ko00830,ko00860,ko00980,ko00982,ko00983,ko01100,ko01110,ko05204,map00040,map00053,map00140,map00565,map00600,map00830,map00860,map00980,map00982,map00983,map01100,map01110,map05204
KEGG ModuleM00014,M00067,M00129
Hectar predicted targeting categoryother localisation
Exons3
Evalue8.68e-05
EggNOG OGsKOG1192@1|root,KOG1192@2759|Eukaryota
EC2.4.1.17,2.4.1.47
Descriptiontransferase activity, transferring hexosyl groups
Cds size858
COG categoryG
CAZyGT1
BRITEko00000,ko00001,ko00002,ko01000,ko01003
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789204.6596093-CDS-D-mesarthrocarpus_Contig10701:152..4231680789204.6596093-CDS-D-mesarthrocarpus_Contig10701:152..423Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10701 153..423 -
1680789204.6777492-CDS-D-mesarthrocarpus_Contig10701:1060..12461680789204.6777492-CDS-D-mesarthrocarpus_Contig10701:1060..1246Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10701 1061..1246 -
1680789204.6899784-CDS-D-mesarthrocarpus_Contig10701:2165..25661680789204.6899784-CDS-D-mesarthrocarpus_Contig10701:2165..2566Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10701 2166..2566 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789204.7126153-UTR-D-mesarthrocarpus_Contig10701:2566..25681680789204.7126153-UTR-D-mesarthrocarpus_Contig10701:2566..2568Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig10701 2567..2568 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10701.1.1prot_D-mesarthrocarpus_Contig10701.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10701 153..2566 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10701.1.1

>prot_D-mesarthrocarpus_Contig10701.1.1 ID=prot_D-mesarthrocarpus_Contig10701.1.1|Name=mRNA_D-mesarthrocarpus_Contig10701.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=286bp
MTSKRSPNEAGCRVMPQPMLHRSAPRRRRGRRYGTAGEAPVPPFRELRAG
LVMVSGLDHGANSSFRLPLIRSIPWVGRGRVWMLSLLRLVALGFSASMLF
LAPMKGMGMGVLGVEIRDAWNSDAETTGGSRASSTPSAPFWSPERPFPRG
LEQREHVLFVGVGEEAAVEPLKAVAEEMMGRGYRASLALPAGLQQWVSDI
PGLSYLPLNPAPYWDAWDQGQGLGQEEEGQEEEGQEKSQGQRRGHSPTRV
NTSSSKLHTPAECPSDIHVDSPESVSIEGEQHTCGA
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mRNA from alignment at D-mesarthrocarpus_Contig10701:153..2568-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10701.1.1 ID=mRNA_D-mesarthrocarpus_Contig10701.1.1|Name=mRNA_D-mesarthrocarpus_Contig10701.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=2416bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10701:153..2568- (Discosporangium mesarthrocarpum MT17_79)
AAATGACATCAAAACGAAGTCCCAATGAGGCAGGGTGTCGTGTCATGCCC
CAGCCGATGCTTCATCGTTCGGCGCCTCGAAGAAGGCGGGGAAGAAGATA
TGGTACAGCAGGGGAAGCCCCAGTCCCTCCGTTTCGGGAGCTTCGCGCTG
GGTTGGTGATGGTGTCCGGTCTTGACCACGGTGCCAACTCGTCCTTTCGT
CTTCCGCTGATAAGGAGCATTCCCTGGGTCGGGCGTGGACGAGTATGGAT
GCTATCCCTCCTAAGATTAGTGGCACTGGGGTTCTCAGCTTCCATGCTGT
TTTTAGCCCCGATGAAAGGGATGGGCATGGGTGTGTTGGGCGTGGAAATC
CGCGATGCTTGGAACAGCGACGCTGAGACGACCGGTGGCTCAAGGGCCTC
AAGGTGGGAAGACACAGTGCGATGAATGACCAGAGAAACGAGATTTGAAT
CTTAAAGACCAATATCCTCCAGTTACATTTTCCTACCGCCTAAATCAGAG
CGATTGTTGGCCCTTGAGCCCTCTTGTTGGATCCATCGCGATCCGTTTCG
CGGTTTGATTGACCTGCTGCCAGAGAGTCTTGCAAGCTGTAACTTTGACA
GCGATTTCACCCCCAGCTTATCGAGGGTAAAGTGTTGTTTCATTTTATTA
AGCGTGCCTCTTTTCGTGCTTGGTAACTGTGCAATGATAGGTCACGACCG
AAAACTTCACGATGGGTAGGGCTCAGTTTGATGACAAAAGGAACCGAAGG
CAACCCCTCTCTTGCTACTCACCTGCTCTTGTCGGCAGCAGCAGAGGCGT
GTATCCCAAACTTAGTTCCATTCGTTAACTTTGTTGTGTGGTCCCCCACC
GCATTGTTAATTGTTGGTTGCATCGGGATCACAGCTTGTATGTCACGGTC
TTCCTTTCTTTCAGCGCCTGTCTCCTCTTTGTATCACTAGGTCACAACGC
TTGCCACTGGTGCTCGTAGACACCTGAAACTAACCGCAGGTACCATCTCC
GGCGTGTGAAGTTTTCCTGGCTCCACCAAATTTCGCTGCTCATTTCGAAC
ACCACCAACAGTAGGATCATTCCATTTTCCACCTTCACCTTCCGGGGGAT
TGCAGTCGTGCTACACTTCTCATAGTGGGGTGTTTCCGAGTCTGTTACCG
ACACCACAAATACCCATTTACCCACTTTACTTACCTGCACATCGCCCATC
CGTCTCTACCTGCCCACTGACACTGGGGACGCTCGATCAACCTCCCAACG
CCTCTCAACCTTACATGAAACCCACCCCATCTCCTGCGTGGTGCTTTCGC
ATTGCGTCATCCGTTTCTGCAGCACTCCTTCAGCACCATTTTGGTCACCA
GAGCGACCGTTCCCAAGGGGATTGGAGCAAAGGGAGCATGTCCTGTTCGT
TGGTGTGGGGGAGGAGGCGGCGGTGGAGCCCCTCAAGGCCGTGGCTGAGG
AAATGATGGGGAGGGGGTATCGGGCCAGCTTGGCTCTCCCTGCGGGTCTG
CAGCAGTGGTGAGCCTGTTGGAGAGCATACACACGTGCTATCTGTCTGTT
TTTTTTGTTTTTCTTGAGCTTGCAAGGTTAGGGTTAGGGTTAGGGTTAGG
GTTAGGGTCAGGGCAACGCGCTTTTCGAAATGGCGTTACCTTGCCACCTT
GCCGTTCCCTGCATCTGTTTTCGGTTTTTGGGAGCATGAGGCTTGGGTCC
GTTTCTCTGAAAAATCGGATGGCGGCTCTAGAGCGGCCCCCGCCTGTAAT
GAGAACAGTCACCTTCGTGGGAGCAGCCCCCACTCACTTTATGTAAGATG
TGACAAGTAATAGGCATTATTCAAGGTAATGCTGGAGCATCCTTGTGTAA
TTCACCGTGAAGCATTCGATAGTTGTTGATTTGATCACCACGTTAACCGA
TTAGTAAGGAGAGACTGCTTGGAGCTCTGGTAGGAGCCCTAGTCCATTTA
GATGTCTGCTTTTGCATGATGGTGGGACCTCCCCCCCCCCTGCCGTGCAG
CCTCTGCCTTGAGGTATCAAAACTACCAATTCTCATGTGACATCCTCAAC
CCTGAACCCCATCCCCAACCCTAACCCTAACGCTAAACCTTTGCCAACTT
TCCCGGGGCGTGCAATTTTTTTTCTGCCCTGGCCTACTTTTCAAGGGTGA
GTGACATCCCTGGGCTGTCGTACCTGCCCCTCAATCCAGCCCCATACTGG
GATGCCTGGGACCAGGGGCAGGGGCTGGGGCAGGAGGAAGAGGGGCAGGA
GGAAGAGGGGCAGGAGAAAAGTCAGGGGCAGCGTCGGGGGCATAGTCCCA
CGAGGGTGAACACTTCTTCCTCTAAACTGCACACTCCGGCAGAGTGCCCC
TCTGACATTCATGTGGACAGCCCAGAATCGGTGTCAATTGAAGGGGAACA
ACATACCTGTGGGGCT
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10701:153..2568-

>mRNA_D-mesarthrocarpus_Contig10701.1.1 ID=mRNA_D-mesarthrocarpus_Contig10701.1.1|Name=mRNA_D-mesarthrocarpus_Contig10701.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=858bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10701:153..2568- (Discosporangium mesarthrocarpum MT17_79)
ATGACATCAAAACGAAGTCCCAATGAGGCAGGGTGTCGTGTCATGCCCCA
GCCGATGCTTCATCGTTCGGCGCCTCGAAGAAGGCGGGGAAGAAGATATG
GTACAGCAGGGGAAGCCCCAGTCCCTCCGTTTCGGGAGCTTCGCGCTGGG
TTGGTGATGGTGTCCGGTCTTGACCACGGTGCCAACTCGTCCTTTCGTCT
TCCGCTGATAAGGAGCATTCCCTGGGTCGGGCGTGGACGAGTATGGATGC
TATCCCTCCTAAGATTAGTGGCACTGGGGTTCTCAGCTTCCATGCTGTTT
TTAGCCCCGATGAAAGGGATGGGCATGGGTGTGTTGGGCGTGGAAATCCG
CGATGCTTGGAACAGCGACGCTGAGACGACCGGTGGCTCAAGGGCCTCAA
GCACTCCTTCAGCACCATTTTGGTCACCAGAGCGACCGTTCCCAAGGGGA
TTGGAGCAAAGGGAGCATGTCCTGTTCGTTGGTGTGGGGGAGGAGGCGGC
GGTGGAGCCCCTCAAGGCCGTGGCTGAGGAAATGATGGGGAGGGGGTATC
GGGCCAGCTTGGCTCTCCCTGCGGGTCTGCAGCAGTGGGTGAGTGACATC
CCTGGGCTGTCGTACCTGCCCCTCAATCCAGCCCCATACTGGGATGCCTG
GGACCAGGGGCAGGGGCTGGGGCAGGAGGAAGAGGGGCAGGAGGAAGAGG
GGCAGGAGAAAAGTCAGGGGCAGCGTCGGGGGCATAGTCCCACGAGGGTG
AACACTTCTTCCTCTAAACTGCACACTCCGGCAGAGTGCCCCTCTGACAT
TCATGTGGACAGCCCAGAATCGGTGTCAATTGAAGGGGAACAACATACCT
GTGGGGCT
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