mRNA_D-mesarthrocarpus_Contig107.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig107.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig107.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig107.1.1 vs. uniprot
Match: A0A6H5KXW1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KXW1_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 3.850e-7
Identity = 41/82 (50.00%), Postives = 48/82 (58.54%), Query Frame = 2 
Query:   62 PIKELKGDP--LNHVLSFT-EGEFLFVAGVSRD*RTAWG-NLPLSTYVEAATESLLRLEWARDSGMEWSVAVCFAAAKNGQL 295
            P+  L  DP  L H++SF     FLFVAGVSR  R AWG   P  T V+AA +S  RL WAR SG+ W  +VC  AA  G L
Sbjct:  724 PVNPL-ADPTILRHLISFAARNGFLFVAGVSRSWRDAWGVERPPETEVDAAVQSPSRLGWARASGLGWGPSVCARAASGGHL 804
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig107.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KXW1_9PHAE3.850e-750.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig107contigD-mesarthrocarpus_Contig107:1452..5180 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1959
Hectar predicted targeting categoryother localisation
Exons4
Cds size987
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig107.1.1prot_D-mesarthrocarpus_Contig107.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig107 1696..4452 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789203.638671-UTR-D-mesarthrocarpus_Contig107:1451..16951680789203.638671-UTR-D-mesarthrocarpus_Contig107:1451..1695Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig107 1452..1695 +
1680789203.7053397-UTR-D-mesarthrocarpus_Contig107:4452..51801680789203.7053397-UTR-D-mesarthrocarpus_Contig107:4452..5180Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig107 4453..5180 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789203.6485124-CDS-D-mesarthrocarpus_Contig107:1695..17491680789203.6485124-CDS-D-mesarthrocarpus_Contig107:1695..1749Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig107 1696..1749 +
1680789203.657938-CDS-D-mesarthrocarpus_Contig107:2771..32251680789203.657938-CDS-D-mesarthrocarpus_Contig107:2771..3225Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig107 2772..3225 +
1680789203.6716797-CDS-D-mesarthrocarpus_Contig107:3492..36051680789203.6716797-CDS-D-mesarthrocarpus_Contig107:3492..3605Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig107 3493..3605 +
1680789203.6890213-CDS-D-mesarthrocarpus_Contig107:4086..44521680789203.6890213-CDS-D-mesarthrocarpus_Contig107:4086..4452Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig107 4087..4452 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig107.1.1

>prot_D-mesarthrocarpus_Contig107.1.1 ID=prot_D-mesarthrocarpus_Contig107.1.1|Name=mRNA_D-mesarthrocarpus_Contig107.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=329bp
MEWSVAVCFAAAKNGQLEVLQWARAEGCPWDEKIVVGAAMTGEVDTLAYA
LDEGCPGRELACPAAASEGQEGVLQFAIDWGCPCGEMTLLQAAWRGIMPI
LKLLRERGIQWSAPACAKAAEGGHLDVVKWARTEGCPWDAWTCSRAASGG
HLDVLEWARDNGCPWDANTCTAAAGAGELGTLAWARARGCPWDATACALA
AYNGHLQVLEYLRRNGCPWNEETCECAIEGGRLETLKYARANGCPWGLYT
QAMRGAPSQQVCPCILAMQMGYRTISLWARANGCPCGAGDSTSVDVRQVE
GAEGGEVEGSASPLGHRGWAVNGLVPGM*
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mRNA from alignment at D-mesarthrocarpus_Contig107:1452..5180+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig107.1.1 ID=mRNA_D-mesarthrocarpus_Contig107.1.1|Name=mRNA_D-mesarthrocarpus_Contig107.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=3729bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig107:1452..5180+ (Discosporangium mesarthrocarpum MT17_79)
AGGAAGACGAGCACTGTCAACGCCACACATGGCCATTGAAAAGGGTGTCA
ATAGAGGCTTTCCAATTAAGGAACTGAAAGGAGATCCATTGAATCACGTG
CTGTCCTTCACTGAGGGGGAGTTCCTGTTTGTAGCCGGGGTGTCTAGGGA
CTAGAGGACTGCGTGGGGCAACCTTCCCTTATCAACTTATGTAGAAGCTG
CTACGGAGTCACTGTTGAGGCTGGAATGGGCACGGGACAGTGGAATGGAA
TGGTCCGTCGCTGTGTGCTTTGCTGCAGCAAAGAACGGCCAGTTGGAGGT
GTGCTCGATTGTATTTTGGTGGACAAAGACGCGGCTTGAAGCACGTTTTT
CAGTACTGTCATGAGGCAAGGTTCGCAACTCCCATGCTAAAGCGTTAGTA
TTGTGTACTGTATGCCCAAAACGCGGCCATTGCCTCGTATTTTGTGTGGA
TGACGACATGAAATGTTGGTGATAAGGTAAGGTAGCACTCATGGCGGGGA
CTTAGAACACCTTCTTTGTCGTCCGTGCTTCCAACCCAGTGTCCGCTCGT
CATGGCGAGTTTATGGTTTTTTCTCGACTATTTTCGCACTGGTGCCCCAG
CATCGGTCTCACATCATTGCCCGAAGTTCATCTCCATTGTTTCAAATGGT
TTCCTGAAGTGGAAGATGCAAGAAGAGGAATCGTAATTAGGTGCAACGAT
CTGTATTTTGTCATCAATCAAAACAGTGTTACCTGTTTTGGCGTGCGCGA
ACCACTTTGAACTCTCTGTGTTTATTTTCTATCAGTGCTACGCCAGGTAG
GTTCACTGGTTGTTTCAATTCCTTCCACCCAGTGGTTTCACTGAGTATTT
CGTAGAATGGTAAACCGAATCGACAAGGCCCACCATTCTCCGTTGACTTC
GGGGGAATCTCAGGTGCCAGGACTGCCCGGCACAATGATGTTCTTCGTGT
CCTGGTTCAGAAAAGTGCCCACAGCTGCCTCTGTACACAGGACGCCCCAG
ATCTCTGCATGCCTGCTGTTGCCTTTGGTTACCTTTGTGGAACTGTGTAG
TATGGTGTTGCACTGACCTTGCCCCCCCCCCGCGCCAAGGGATTTGCTTG
TGTGCTTCCCAAGCACCCACATTTGACACCTTTGAGACCATTGATTCCAG
AAACGGTGAGAGGAAGCTTCTTCCCTCCTCACTCCTCTCCTTTTCCCCTT
TTATGAACCCTATGCTCATGGGTTTGAGTATTGTGAGTGTCAATCCTGAC
CCAAGCCCTAGCCAATTGCCCCTTGCCCACCCTTTCCTCCTGCATATGTC
GTAACTGTTGCCCTGTGAAGGTCCTGCAATGGGCAAGGGCCGAGGGTTGT
CCGTGGGATGAGAAGATTGTGGTGGGTGCCGCGATGACTGGAGAAGTGGA
CACACTTGCCTACGCCCTAGATGAGGGGTGCCCTGGCAGAGAACTGGCCT
GCCCTGCGGCAGCATCGGAGGGGCAGGAGGGGGTACTGCAGTTCGCCATC
GACTGGGGGTGTCCCTGTGGGGAGATGACGCTGCTGCAGGCCGCCTGGAG
AGGGATTATGCCTATACTGAAGCTGCTGAGGGAGAGGGGCATACAGTGGA
GCGCTCCTGCATGCGCCAAAGCTGCGGAGGGGGGGCACTTGGATGTAGTC
AAGTGGGCAAGAACAGAGGGGTGCCCCTGGGATGCGTGGACATGCTCCAG
GGCGGCTTCGGGAGGCCACTTGGATGTGCTGGAGTGGGCAAGAGACAACG
GGTGCCCCTGGGATGCCAATACTTGTGAGAGCTGACCTCTGGGCTTCTAG
TCTTACTGTACTGCCTATGTTGTCATTGTAGCATCATGCACGTGTTTCCC
AGTGCTCTGCTGTAGAGCTCTACAGCTCTACATGGTGTTAGTTCTCTTTG
GCATGCCAAGCTTGTGTTGGGGGTGCCATGTCGTGTTGAGATGCCTGCAT
CTGTTGCACTTGTGTAAATACATGGATTGCTCTCTTTCTTGTGTTCACTA
CCTTTTGCTATTTGTGCTACATAACATTGTGTGTTGTTCAGGCACAGCTG
CTGCTGGGGCAGGAGAACTAGGCACGTTGGCATGGGCAAGAGCAAGGGGT
TGTCCATGGGATGCCACGGCGTGCGCGCTTGCAGCCTACAATGGACACTT
GCAGGTGAACCCTAATGCTAACCCTAACCCTACTGTATGACTGACTCCAT
GTGTGCTAGCTCACCCAAACCTTACAAAATTACTTTGAAGTACAGGACAC
ACATTTCCTGGCCTTGGCTTGGATCAAGTCTCAGGTTTAGTATAGAGTTG
TGATGCCCTTATTGCCCCTAAGGCGGGAAGAATGGAGGTGGTATACCTAA
CCCTAACCCTATGGGAGGCCTCACTTCGAGCATGGTGCAGGAGCAGGCTC
TAACAGAGTCTTTTCTATTTTATGCAAAACTCACCTGGTCAGCAAGGCTA
AGCATTTCGAAAGAACCTGGAGCAATGGTCCCACAATACTGTGCTCTCAA
GAATGCAGGGCCCGTGAGGTACGTTAAGTGTTGGCCTCCTTCAGCCACCC
CTGTGCCACATAGCCTCACCACCCATACTCCCGCTCACCACTCCATTCTG
CCAACGCTCCCCCCTGGTGTTCGTCCCTCGCTCAGGTGCTTGAATACTTG
AGGCGCAATGGGTGCCCATGGAACGAGGAAACTTGTGAGTGTGCCATTGA
GGGGGGTCGACTTGAAACTCTTAAGTACGCCAGGGCCAACGGATGCCCTT
GGGGTCTCTACACCCAAGCCATGCGGGGGGCCCCATCACAGCAAGTATGC
CCGTGCATCCTGGCCATGCAGATGGGGTACCGAACCATCTCCTTGTGGGC
ACGGGCTAATGGGTGCCCCTGTGGCGCAGGAGATAGCACAAGTGTAGACG
TGAGGCAGGTGGAGGGCGCTGAGGGGGGTGAAGTAGAAGGTAGTGCCAGT
CCACTTGGTCACAGGGGCTGGGCGGTGAATGGTCTTGTACCTGGTATGTG
AGGTATTGCATGCGACATACCTGTGTATCTGCTTGCAACCTGGGGAACTT
CTGTCAGCATCTTTCAGTGTCCTTTAACCAGCACATTTCAATGCTTTTGG
TTTGAATGTGAGGAAGGAAGAGGAATTTCATGCATGTTTTGCTTGACCTG
CATCACACGCAGGGTGAACATGAGTATGTTTTATGGTGTAGGGTTAGCCA
CGAACAGTAGCTTTGGAGTACTTGGGGTTAGTTTGAAGTTGTACTTTCAC
GTGGTAATGAAATCCTGGCCCATAGCTTTGTCGGGTCATGTAATTGGATT
GTCTGCTGTGACTTCAATCTTACAGTGCAATACTGGTGCTGAAGCACCAG
TTTACTAGATATATCGACTACAGCACTTGCAGTATTCAGTGCATTCGAAG
CTGAGCATGCGCTGACCCCAAGACATTTTGGGAAATGGATGCTTTGACAT
TACACTTCCACATGTTGAGATAGCCAAGATATTTAGATAGCCAAGCTGTC
TGGCCAGAAAGTCTGGAGTACAGTGATGTTGCAATATGTACAACTTCAAG
GTGGTCCTCACTTTACACATAAATTTCTCAATAGAAGTCAAGGTAAAGAT
CGTTTTTCACTTAGTGGGCAACGAAGGCATTTGAGTTTTCAAAACGAACA
CAGTCCCCTGAAAGCAACAGGCTCAGCTTCCTCGTGGTGTTTTTTTATTG
GATAATATCATTTTAAAATTTAGGTATAA
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig107:1452..5180+

>mRNA_D-mesarthrocarpus_Contig107.1.1 ID=mRNA_D-mesarthrocarpus_Contig107.1.1|Name=mRNA_D-mesarthrocarpus_Contig107.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=987bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig107:1452..5180+ (Discosporangium mesarthrocarpum MT17_79)
ATGGAATGGTCCGTCGCTGTGTGCTTTGCTGCAGCAAAGAACGGCCAGTT
GGAGGTCCTGCAATGGGCAAGGGCCGAGGGTTGTCCGTGGGATGAGAAGA
TTGTGGTGGGTGCCGCGATGACTGGAGAAGTGGACACACTTGCCTACGCC
CTAGATGAGGGGTGCCCTGGCAGAGAACTGGCCTGCCCTGCGGCAGCATC
GGAGGGGCAGGAGGGGGTACTGCAGTTCGCCATCGACTGGGGGTGTCCCT
GTGGGGAGATGACGCTGCTGCAGGCCGCCTGGAGAGGGATTATGCCTATA
CTGAAGCTGCTGAGGGAGAGGGGCATACAGTGGAGCGCTCCTGCATGCGC
CAAAGCTGCGGAGGGGGGGCACTTGGATGTAGTCAAGTGGGCAAGAACAG
AGGGGTGCCCCTGGGATGCGTGGACATGCTCCAGGGCGGCTTCGGGAGGC
CACTTGGATGTGCTGGAGTGGGCAAGAGACAACGGGTGCCCCTGGGATGC
CAATACTTGCACAGCTGCTGCTGGGGCAGGAGAACTAGGCACGTTGGCAT
GGGCAAGAGCAAGGGGTTGTCCATGGGATGCCACGGCGTGCGCGCTTGCA
GCCTACAATGGACACTTGCAGGTGCTTGAATACTTGAGGCGCAATGGGTG
CCCATGGAACGAGGAAACTTGTGAGTGTGCCATTGAGGGGGGTCGACTTG
AAACTCTTAAGTACGCCAGGGCCAACGGATGCCCTTGGGGTCTCTACACC
CAAGCCATGCGGGGGGCCCCATCACAGCAAGTATGCCCGTGCATCCTGGC
CATGCAGATGGGGTACCGAACCATCTCCTTGTGGGCACGGGCTAATGGGT
GCCCCTGTGGCGCAGGAGATAGCACAAGTGTAGACGTGAGGCAGGTGGAG
GGCGCTGAGGGGGGTGAAGTAGAAGGTAGTGCCAGTCCACTTGGTCACAG
GGGCTGGGCGGTGAATGGTCTTGTACCTGGTATGTGA
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